RNA–Protein interactions for RNA: ENST00000425443.6

COL12A1-205, Transcript of collagen type XII alpha 1 chain, human

TSL 5

Gene COL12A1, Length 3,135 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COL12A1-205	ENST00000425443	SFTA3	P0C7M3	94 aa		11.28	□□□□□ -0.6
COL12A1-205	ENST00000425443	CYB561	P49447	251 aa		11.28	□□□□□ -0.6
COL12A1-205	ENST00000425443	MRPS34	P82930	218 aa	Known RBP	11.28	□□□□□ -0.6
COL12A1-205	ENST00000425443	FAM89B	Q8N5H3	189 aa		11.28	□□□□□ -0.6
COL12A1-205	ENST00000425443	WFDC12	Q8WWY7	111 aa		11.28	□□□□□ -0.6
COL12A1-205	ENST00000425443	C2orf50	Q96LR7	162 aa		11.28	□□□□□ -0.6
COL12A1-205	ENST00000425443	PECR	Q9BY49	303 aa		11.28	□□□□□ -0.6
COL12A1-205	ENST00000425443	CHST5	Q9GZS9	411 aa		11.28	□□□□□ -0.6
COL12A1-205	ENST00000425443	C14orf166	Q9Y224	244 aa	Known RBP	11.28	□□□□□ -0.6
COL12A1-205	ENST00000425443	LOC400499	M0QZD8	3231 aa		11.28	□□□□□ -0.6
COL12A1-205	ENST00000425443	FREM1	Q5H8C1	2179 aa		11.27	□□□□□ -0.6
COL12A1-205	ENST00000425443	ZNF850	A8MQ14	1090 aa		11.27	□□□□□ -0.6
COL12A1-205	ENST00000425443	SLC33A1	O00400	549 aa	Predicted RBP	11.27	□□□□□ -0.6
COL12A1-205	ENST00000425443	RFPL3S	P0C7P2	107 aa		11.27	□□□□□ -0.6
COL12A1-205	ENST00000425443	RBMX	P38159	391 aa	Known RBP	11.27	□□□□□ -0.6
COL12A1-205	ENST00000425443	TAS2R46	P59540	309 aa		11.27	□□□□□ -0.6
COL12A1-205	ENST00000425443	MRPS11	P82912	194 aa	Known RBP	11.27	□□□□□ -0.6
COL12A1-205	ENST00000425443	CYCS	P99999	105 aa	Known RBP	11.27	□□□□□ -0.6
COL12A1-205	ENST00000425443	LBH	Q53QV2	105 aa	Predicted RBP	11.27	□□□□□ -0.6
COL12A1-205	ENST00000425443	FAM27B	Q5VT28	67 aa		11.27	□□□□□ -0.6
COL12A1-205	ENST00000425443	C9orf135	Q5VTT2	229 aa		11.27	□□□□□ -0.6
COL12A1-205	ENST00000425443	DEFB123	Q8N688	67 aa		11.27	□□□□□ -0.6
COL12A1-205	ENST00000425443	UBAC2	Q8NBM4	344 aa		11.27	□□□□□ -0.6
COL12A1-205	ENST00000425443	KCNE4	Q8WWG9	221 aa		11.27	□□□□□ -0.6
COL12A1-205	ENST00000425443	HAS2	Q92819	552 aa		11.27	□□□□□ -0.6
COL12A1-205	ENST00000425443	REEP6	Q96HR9	211 aa		11.27	□□□□□ -0.6
COL12A1-205	ENST00000425443	TAF9B	Q9HBM6	251 aa		11.27	□□□□□ -0.6
COL12A1-205	ENST00000425443	CYB5R3	P00387	301 aa	Predicted RBP	11.27	□□□□□ -0.61
COL12A1-205	ENST00000425443	OR8U9	P0C7N5	309 aa		11.27	□□□□□ -0.61
COL12A1-205	ENST00000425443	CAV2	P51636	162 aa		11.27	□□□□□ -0.61
COL12A1-205	ENST00000425443	SRY	Q05066	204 aa		11.27	□□□□□ -0.61
COL12A1-205	ENST00000425443	PHLDA2	Q53GA4	152 aa		11.27	□□□□□ -0.61
COL12A1-205	ENST00000425443	PPP1R32	Q7Z5V6	425 aa		11.27	□□□□□ -0.61
COL12A1-205	ENST00000425443	OR8U1	Q8NH10	309 aa		11.27	□□□□□ -0.61
COL12A1-205	ENST00000425443	SF3B5	Q9BWJ5	86 aa	Known RBP	11.27	□□□□□ -0.61
COL12A1-205	ENST00000425443	STRADB	Q9C0K7	418 aa		11.27	□□□□□ -0.61
COL12A1-205	ENST00000425443	RNASEK-C17orf49	H0YIS7	233 aa		11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	FCGR3A	P08637	254 aa		11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	CCNO	P22674	350 aa		11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	PAX6	P26367	422 aa		11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	FOXO1	Q12778	655 aa		11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	SLC16A14	Q7RTX9	510 aa		11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	OR10D3	Q8NH80	312 aa		11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	CT55	Q8WUE5	264 aa		11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	BCO1	Q9HAY6	547 aa		11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	METTL1	Q9UBP6	276 aa	Known RBP	11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	FOXD3	Q9UJU5	478 aa	Predicted RBP	11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443		V9GYS6	101 aa		11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	NBEA	Q8NFP9	2946 aa		11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	CA11	O75493	328 aa		11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	ZNF32	P17041	273 aa		11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	ACKR3	P25106	362 aa		11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	CD80	P33681	288 aa		11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	ARL6IP1	Q15041	203 aa		11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	RAB35	Q15286	201 aa		11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	CEACAM16	Q2WEN9	425 aa		11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	SLC23A3	Q6PIS1	610 aa		11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	DHRS11	Q6UWP2	260 aa		11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	SULF2	Q8IWU5	870 aa		11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	OR1F12	Q8NHA8	337 aa		11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	ERGIC1	Q969X5	290 aa		11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	BORCS8	Q96FH0	119 aa		11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	GUCD1	Q96NT3	240 aa		11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	SH2D2A	Q9NP31	389 aa		11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	P4HTM	Q9NXG6	502 aa		11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	COLCA2	A8K830	154 aa		11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	XRCC2	O43543	280 aa		11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	GOSR1	O95249	250 aa		11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	TDGF1	P13385	188 aa		11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	S100A2	P29034	98 aa		11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	ASCL1	P50553	236 aa		11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	F2RL1	P55085	397 aa		11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	ZXDA	P98168	799 aa		11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	TMEM268	Q5VZI3	342 aa		11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	BTNL8	Q6UX41	500 aa		11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	IL34	Q6ZMJ4	242 aa		11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	C1orf122	Q6ZSJ8	110 aa		11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	MRPL24	Q96A35	216 aa	Known RBP	11.26	□□□□□ -0.61
COL12A1-205	ENST00000425443	SERPINE3	A8MV23	424 aa		11.25	□□□□□ -0.61
COL12A1-205	ENST00000425443	OR2B8P	P59922	312 aa		11.25	□□□□□ -0.61
COL12A1-205	ENST00000425443		Q0VFX4	171 aa		11.25	□□□□□ -0.61
COL12A1-205	ENST00000425443	PIGY	Q3MUY2	71 aa		11.25	□□□□□ -0.61
COL12A1-205	ENST00000425443	OR2V1	Q8NHB1	315 aa		11.25	□□□□□ -0.61
COL12A1-205	ENST00000425443	FOXB1	Q99853	325 aa		11.25	□□□□□ -0.61
COL12A1-205	ENST00000425443	LRFN1	Q9P244	771 aa		11.25	□□□□□ -0.61
COL12A1-205	ENST00000425443	FBXL17	Q9UF56	701 aa		11.25	□□□□□ -0.61
COL12A1-205	ENST00000425443	CD5	P06127	495 aa		11.25	□□□□□ -0.61
COL12A1-205	ENST00000425443	FHIT	P49789	147 aa		11.25	□□□□□ -0.61
COL12A1-205	ENST00000425443	NOVA1	P51513	510 aa	Known RBP	11.25	□□□□□ -0.61
COL12A1-205	ENST00000425443	SUCLG1	P53597	346 aa	Known RBP	11.25	□□□□□ -0.61
COL12A1-205	ENST00000425443	HGFAC	Q04756	655 aa		11.25	□□□□□ -0.61
COL12A1-205	ENST00000425443	PEA15	Q15121	130 aa		11.25	□□□□□ -0.61
COL12A1-205	ENST00000425443	SPINK14	Q6IE38	97 aa		11.25	□□□□□ -0.61
COL12A1-205	ENST00000425443	C5orf24	Q7Z6I8	188 aa		11.25	□□□□□ -0.61
COL12A1-205	ENST00000425443	THNSL2	Q86YJ6	484 aa		11.25	□□□□□ -0.61
COL12A1-205	ENST00000425443	AKR1E2	Q96JD6	320 aa		11.25	□□□□□ -0.61
COL12A1-205	ENST00000425443	TMEM38B	Q9NVV0	291 aa		11.25	□□□□□ -0.61
COL12A1-205	ENST00000425443	AMDHD2	Q9Y303	409 aa		11.25	□□□□□ -0.61
COL12A1-205	ENST00000425443	HSPB6	O14558	160 aa		11.24	□□□□□ -0.61
COL12A1-205	ENST00000425443	DNPH1	O43598	174 aa		11.24	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms