RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 CITED1Q99966 193 aa15.42■□□□□ 0.06
SF3A1-202ENST00000411423 PPIL3Q9H2H8 161 aaKnown RBP15.42■□□□□ 0.06
SF3A1-202ENST00000411423 C16orf95Q9H693 158 aa15.42■□□□□ 0.06
SF3A1-202ENST00000411423 ZNF696Q9H7X3 374 aa15.42■□□□□ 0.06
SF3A1-202ENST00000411423 FKBP14Q9NWM8 211 aa15.42■□□□□ 0.06
SF3A1-202ENST00000411423 ING3Q9NXR8 418 aa15.42■□□□□ 0.06
SF3A1-202ENST00000411423 PNMA8CA0A1B0GUJ8 204 aa15.41■□□□□ 0.06
SF3A1-202ENST00000411423 BTBD17A6NE02 478 aa15.41■□□□□ 0.06
SF3A1-202ENST00000411423 CHST1O43916 411 aa15.41■□□□□ 0.06
SF3A1-202ENST00000411423 TSPAN9O75954 239 aa15.41■□□□□ 0.06
SF3A1-202ENST00000411423 RAB13P51153 203 aa15.41■□□□□ 0.06
SF3A1-202ENST00000411423 ATXN7L3Q14CW9 347 aaPredicted RBP15.41■□□□□ 0.06
SF3A1-202ENST00000411423 PIGYQ3MUY2 71 aa15.41■□□□□ 0.06
SF3A1-202ENST00000411423 PRAMEF5Q5TYX0 476 aa15.41■□□□□ 0.06
SF3A1-202ENST00000411423 ELP2Q6IA86 826 aa15.41■□□□□ 0.06
SF3A1-202ENST00000411423 CCBE1Q6UXH8 406 aaPredicted RBP15.41■□□□□ 0.06
SF3A1-202ENST00000411423 AHSA2Q719I0 299 aa15.41■□□□□ 0.06
SF3A1-202ENST00000411423 BPIFB6Q8NFQ5 453 aa15.41■□□□□ 0.06
SF3A1-202ENST00000411423 OR13D1Q8NGV5 346 aa15.41■□□□□ 0.06
SF3A1-202ENST00000411423 SGCDQ92629 289 aa15.41■□□□□ 0.06
SF3A1-202ENST00000411423 NR1H4Q96RI1 486 aaPredicted RBP15.41■□□□□ 0.06
SF3A1-202ENST00000411423 RHOFQ9HBH0 211 aa15.41■□□□□ 0.06
SF3A1-202ENST00000411423 PLCXD1Q9NUJ7 323 aa15.41■□□□□ 0.06
SF3A1-202ENST00000411423 CNOT2Q9NZN8 540 aaKnown RBP15.41■□□□□ 0.06
SF3A1-202ENST00000411423 GLS2Q9UI32 602 aa15.41■□□□□ 0.06
SF3A1-202ENST00000411423 SIGLEC9Q9Y336 463 aa15.41■□□□□ 0.06
SF3A1-202ENST00000411423 SESN1Q9Y6P5 492 aa15.41■□□□□ 0.06
SF3A1-202ENST00000411423 TRAV8-7A0A075B6U6 113 aa15.4■□□□□ 0.06
SF3A1-202ENST00000411423 IGHV2-26A0A0B4J1V2 119 aa15.4■□□□□ 0.06
SF3A1-202ENST00000411423 TRAV24A0A0B4J272 114 aa15.4■□□□□ 0.06
SF3A1-202ENST00000411423 EFCAB10A6NFE3 127 aa15.4■□□□□ 0.06
SF3A1-202ENST00000411423 CLPXO76031 633 aa15.4■□□□□ 0.06
SF3A1-202ENST00000411423 CDRT1O95170 752 aa15.4■□□□□ 0.06
SF3A1-202ENST00000411423 ALDOBP05062 364 aa15.4■□□□□ 0.06
SF3A1-202ENST00000411423 MTNR1BP49286 362 aa15.4■□□□□ 0.06
SF3A1-202ENST00000411423 LGALS4P56470 323 aa15.4■□□□□ 0.06
SF3A1-202ENST00000411423 SLC35E4Q6ICL7 350 aa15.4■□□□□ 0.06
SF3A1-202ENST00000411423 Q8NFD4 153 aa15.4■□□□□ 0.06
SF3A1-202ENST00000411423 CORO2AQ92828 525 aa15.4■□□□□ 0.06
SF3A1-202ENST00000411423 FAM192AQ9GZU8 254 aa15.4■□□□□ 0.06
SF3A1-202ENST00000411423 DCLRE1BQ9H816 532 aa15.4■□□□□ 0.06
SF3A1-202ENST00000411423 UBE2J1Q9Y385 318 aaPredicted RBP15.4■□□□□ 0.06
SF3A1-202ENST00000411423 TRBV5-7A0A0A0MS05 114 aa15.39■□□□□ 0.05
SF3A1-202ENST00000411423 A0A1W2PP11 408 aa15.39■□□□□ 0.05
SF3A1-202ENST00000411423 A0A1W2PPK0 400 aa15.39■□□□□ 0.05
SF3A1-202ENST00000411423 FAM172BPA6NC97 362 aa15.39■□□□□ 0.05
SF3A1-202ENST00000411423 H0YJX3 145 aa15.39■□□□□ 0.05
SF3A1-202ENST00000411423 HSPB6O14558 160 aa15.39■□□□□ 0.05
SF3A1-202ENST00000411423 DEGS1O15121 323 aa15.39■□□□□ 0.05
SF3A1-202ENST00000411423 CSN2P05814 226 aa15.39■□□□□ 0.05
SF3A1-202ENST00000411423 TGFBR2P37173 567 aa15.39■□□□□ 0.05
SF3A1-202ENST00000411423 AQP4P55087 323 aa15.39■□□□□ 0.05
SF3A1-202ENST00000411423 SLC34A1Q06495 639 aa15.39■□□□□ 0.05
SF3A1-202ENST00000411423 DYNC1I2Q13409 638 aaKnown RBP15.39■□□□□ 0.05
SF3A1-202ENST00000411423 AANATQ16613 207 aa15.39■□□□□ 0.05
SF3A1-202ENST00000411423 DDI2Q5TDH0 399 aa15.39■□□□□ 0.05
SF3A1-202ENST00000411423 TRAPPC6BQ86SZ2 158 aa15.39■□□□□ 0.05
SF3A1-202ENST00000411423 OR51T1Q8NGJ9 327 aa15.39■□□□□ 0.05
SF3A1-202ENST00000411423 GPER1Q99527 375 aa15.39■□□□□ 0.05
SF3A1-202ENST00000411423 TMEM133Q9H2Q1 129 aa15.39■□□□□ 0.05
SF3A1-202ENST00000411423 TBL2Q9Y4P3 447 aaKnown RBP15.39■□□□□ 0.05
SF3A1-202ENST00000411423 ODAMA1E959 279 aa15.38■□□□□ 0.05
SF3A1-202ENST00000411423 VGLL3A8MV65 326 aa15.38■□□□□ 0.05
SF3A1-202ENST00000411423 PIN1P1O15428 100 aa15.38■□□□□ 0.05
SF3A1-202ENST00000411423 CD2P06729 351 aa15.38■□□□□ 0.05
SF3A1-202ENST00000411423 PTGFRP43088 359 aa15.38■□□□□ 0.05
SF3A1-202ENST00000411423 SSX2Q16385 188 aa15.38■□□□□ 0.05
SF3A1-202ENST00000411423 C17orf58Q2M2W7 97 aa15.38■□□□□ 0.05
SF3A1-202ENST00000411423 KRBOX4Q5JUW0 171 aa15.38■□□□□ 0.05
SF3A1-202ENST00000411423 HIST2H2BDQ6DRA6 164 aa15.38■□□□□ 0.05
SF3A1-202ENST00000411423 NANOGP1Q8N7R0 232 aa15.38■□□□□ 0.05
SF3A1-202ENST00000411423 CHST4Q8NCG5 386 aa15.38■□□□□ 0.05
SF3A1-202ENST00000411423 OR4P4Q8NGL7 312 aa15.38■□□□□ 0.05
SF3A1-202ENST00000411423 PLPPR1Q8TBJ4 325 aa15.38■□□□□ 0.05
SF3A1-202ENST00000411423 CYYR1Q96J86 154 aa15.38■□□□□ 0.05
SF3A1-202ENST00000411423 OR14A2Q96R54 314 aa15.38■□□□□ 0.05
SF3A1-202ENST00000411423 TMEM138Q9NPI0 162 aa15.38■□□□□ 0.05
SF3A1-202ENST00000411423 PAK1IP1Q9NWT1 392 aaPredicted RBP15.38■□□□□ 0.05
SF3A1-202ENST00000411423 CHCHD3Q9NX63 227 aaKnown RBP15.38■□□□□ 0.05
SF3A1-202ENST00000411423 MAGEB3O15480 346 aa15.37■□□□□ 0.05
SF3A1-202ENST00000411423 GPX5O75715 221 aa15.37■□□□□ 0.05
SF3A1-202ENST00000411423 HTR3BO95264 441 aa15.37■□□□□ 0.05
SF3A1-202ENST00000411423 CGB3P0DN86 165 aa15.37■□□□□ 0.05
SF3A1-202ENST00000411423 CGB7P0DN87 165 aa15.37■□□□□ 0.05
SF3A1-202ENST00000411423 CDK2P24941 298 aa15.37■□□□□ 0.05
SF3A1-202ENST00000411423 BDKRB2P30411 391 aa15.37■□□□□ 0.05
SF3A1-202ENST00000411423 ZNF93P35789 620 aaPredicted RBP15.37■□□□□ 0.05
SF3A1-202ENST00000411423 FAM189A2Q15884 450 aa15.37■□□□□ 0.05
SF3A1-202ENST00000411423 Q499Y3 187 aa15.37■□□□□ 0.05
SF3A1-202ENST00000411423 FBLN7Q53RD9 439 aa15.37■□□□□ 0.05
SF3A1-202ENST00000411423 YIF1BQ5BJH7 314 aa15.37■□□□□ 0.05
SF3A1-202ENST00000411423 BRICD5Q6PL45 260 aa15.37■□□□□ 0.05
SF3A1-202ENST00000411423 STX19Q8N4C7 294 aa15.37■□□□□ 0.05
SF3A1-202ENST00000411423 MALSU1Q96EH3 234 aa15.37■□□□□ 0.05
SF3A1-202ENST00000411423 ZNF286AQ9HBT8 521 aa15.37■□□□□ 0.05
SF3A1-202ENST00000411423 ING4Q9UNL4 249 aa15.37■□□□□ 0.05
SF3A1-202ENST00000411423 PCDHGB5Q9Y5G0 923 aa15.37■□□□□ 0.05
SF3A1-202ENST00000411423 TRGV10A0A0A0MS01 117 aa15.36■□□□□ 0.05
SF3A1-202ENST00000411423 A6NDX4 124 aa15.36■□□□□ 0.05
SF3A1-202ENST00000411423 WNT4P56705 351 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms