RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 HRNRQ86YZ3 2850 aaPredicted RBP11.39□□□□□ -0.59
LIMS1-204ENST00000409441 CELSR2Q9HCU4 2923 aa11.39□□□□□ -0.59
LIMS1-204ENST00000409441 ZNF816-ZNF321PA0A0X1KG74 233 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 CEACAM18A8MTB9 384 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 IQCF6A8MYZ5 107 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 L7N2F9 121 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 M0R233 179 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 LILRA1O75019 489 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 NRASP01111 189 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 IFNA7P01567 189 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 HLA-GP17693 338 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 NFYAP23511 347 aaPredicted RBP11.38□□□□□ -0.59
LIMS1-204ENST00000409441 CD34P28906 385 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 BLVRBP30043 206 aaPredicted RBP11.38□□□□□ -0.59
LIMS1-204ENST00000409441 FUT6P51993 359 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 ATP1B3P54709 279 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 TAS2R46P59540 309 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 MICBQ29980 383 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 C2orf68Q2NKX9 166 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 TMEM17Q86X19 198 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 OR56B2PQ8NGI1 322 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 MRGPRFQ96AM1 343 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 BORCS8Q96FH0 119 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 POM121Q96HA1 1249 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 Q96M66 194 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 CBLN4Q9NTU7 201 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 IL36GQ9NZH8 169 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 GPR160Q9UJ42 338 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 SLC7A11Q9UPY5 501 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 MCRIP1C9JLW8 97 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 PMP2P02689 132 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 TMEM225BP0DP42 221 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 AMY2BP19961 511 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 SEC61A1P61619 476 aaKnown RBP11.38□□□□□ -0.59
LIMS1-204ENST00000409441 LIN54Q6MZP7 749 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 C20orf204Q6ZNR8 217 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 RTN4RL2Q86UN3 420 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 DTX2Q86UW9 622 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 CSNK2A3Q8NEV1 391 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 PXT1Q8NFP0 134 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 OR8G5Q8NG78 346 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 OR5M8Q8NGP6 311 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 OR5H2Q8NGV7 314 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 TERB2Q8NHR7 220 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 MRPS24Q96EL2 167 aaKnown RBP11.38□□□□□ -0.59
LIMS1-204ENST00000409441 LIME1Q9H400 295 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 ELL3Q9HB65 397 aaPredicted RBP11.38□□□□□ -0.59
LIMS1-204ENST00000409441 MSL2Q9HCI7 577 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 PCDHB16Q9NRJ7 776 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 TMEM100Q9NV29 134 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 HSF4Q9ULV5 492 aa11.38□□□□□ -0.59
LIMS1-204ENST00000409441 OR2AT4A6NND4 320 aa11.37□□□□□ -0.59
LIMS1-204ENST00000409441 ANKRD30BLA7E2S9 258 aa11.37□□□□□ -0.59
LIMS1-204ENST00000409441 SIX6O95475 246 aa11.37□□□□□ -0.59
LIMS1-204ENST00000409441 HLA-AP01891 365 aaKnown RBP11.37□□□□□ -0.59
LIMS1-204ENST00000409441 CSTBP04080 98 aaKnown RBP11.37□□□□□ -0.59
LIMS1-204ENST00000409441 FGL1Q08830 312 aa11.37□□□□□ -0.59
LIMS1-204ENST00000409441 OPCMLQ14982 345 aa11.37□□□□□ -0.59
LIMS1-204ENST00000409441 RSU1Q15404 277 aa11.37□□□□□ -0.59
LIMS1-204ENST00000409441 GRK1Q15835 563 aa11.37□□□□□ -0.59
LIMS1-204ENST00000409441 DCAF12L2Q5VW00 463 aa11.37□□□□□ -0.59
LIMS1-204ENST00000409441 OR10K1Q8NGX5 313 aa11.37□□□□□ -0.59
LIMS1-204ENST00000409441 MITD1Q8WV92 249 aa11.37□□□□□ -0.59
LIMS1-204ENST00000409441 NRGNQ92686 78 aa11.37□□□□□ -0.59
LIMS1-204ENST00000409441 ELMOD3Q96FG2 381 aa11.37□□□□□ -0.59
LIMS1-204ENST00000409441 TMEM165Q9HC07 324 aa11.37□□□□□ -0.59
LIMS1-204ENST00000409441 NOP16Q9Y3C1 178 aaKnown RBP11.37□□□□□ -0.59
LIMS1-204ENST00000409441 LRBAP50851 2863 aa11.36□□□□□ -0.59
LIMS1-204ENST00000409441 FAM230AA0A1W2PPH8 454 aa11.36□□□□□ -0.59
LIMS1-204ENST00000409441 C9orf170A2RU37 121 aa11.36□□□□□ -0.59
LIMS1-204ENST00000409441 ANKRD34BA5PLL1 514 aa11.36□□□□□ -0.59
LIMS1-204ENST00000409441 RFPL4AA6NLU0 287 aa11.36□□□□□ -0.59
LIMS1-204ENST00000409441 RFPL4AL1F8VTS6 287 aa11.36□□□□□ -0.59
LIMS1-204ENST00000409441 CST4P01036 141 aa11.36□□□□□ -0.59
LIMS1-204ENST00000409441 CXCL2P19875 107 aa11.36□□□□□ -0.59
LIMS1-204ENST00000409441 CA6P23280 308 aa11.36□□□□□ -0.59
LIMS1-204ENST00000409441 FPR2P25090 351 aa11.36□□□□□ -0.59
LIMS1-204ENST00000409441 ECI1P42126 302 aa11.36□□□□□ -0.59
LIMS1-204ENST00000409441 OR3A3P47888 321 aa11.36□□□□□ -0.59
LIMS1-204ENST00000409441 LY6G6FQ5SQ64 297 aa11.36□□□□□ -0.59
LIMS1-204ENST00000409441 C11orf71Q6IPW1 123 aa11.36□□□□□ -0.59
LIMS1-204ENST00000409441 Q6ZR03 302 aa11.36□□□□□ -0.59
LIMS1-204ENST00000409441 ZCCHC24Q8N2G6 241 aaKnown RBP11.36□□□□□ -0.59
LIMS1-204ENST00000409441 ZSCAN4Q8NAM6 433 aaPredicted RBP11.36□□□□□ -0.59
LIMS1-204ENST00000409441 OR13G1Q8NGZ3 307 aa11.36□□□□□ -0.59
LIMS1-204ENST00000409441 PIGCQ92535 297 aa11.36□□□□□ -0.59
LIMS1-204ENST00000409441 GTF3AQ92664 365 aaKnown RBP11.36□□□□□ -0.59
LIMS1-204ENST00000409441 PHB2Q99623 299 aa11.36□□□□□ -0.59
LIMS1-204ENST00000409441 DPCDQ9BVM2 203 aaPredicted RBP11.36□□□□□ -0.59
LIMS1-204ENST00000409441 MS4A5Q9H3V2 200 aa11.36□□□□□ -0.59
LIMS1-204ENST00000409441 DYNLRB1Q9NP97 96 aa11.36□□□□□ -0.59
LIMS1-204ENST00000409441 UBQLN2Q9UHD9 624 aa11.36□□□□□ -0.59
LIMS1-204ENST00000409441 EDARQ9UNE0 448 aa11.36□□□□□ -0.59
LIMS1-204ENST00000409441 IGKV1-27A0A075B6S5 117 aa11.35□□□□□ -0.59
LIMS1-204ENST00000409441 ZSCAN5BA6NJL1 495 aa11.35□□□□□ -0.59
LIMS1-204ENST00000409441 SPRY3O43610 288 aa11.35□□□□□ -0.59
LIMS1-204ENST00000409441 HTR3BO95264 441 aa11.35□□□□□ -0.59
LIMS1-204ENST00000409441 MPC2O95563 127 aa11.35□□□□□ -0.59
LIMS1-204ENST00000409441 DUS4LO95620 317 aaKnown RBP11.35□□□□□ -0.59
LIMS1-204ENST00000409441 SNU13P55769 128 aaKnown RBP11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms