RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 HIST1H2BJP06899 126 aa18.1■□□□□ 0.49
CTCF-202ENST00000401394 GLB1P16278 677 aa18.1■□□□□ 0.49
CTCF-202ENST00000401394 HIST1H2BOP23527 126 aa18.1■□□□□ 0.49
CTCF-202ENST00000401394 HIST1H2BBP33778 126 aa18.1■□□□□ 0.49
CTCF-202ENST00000401394 FGF8P55075 233 aaPredicted RBP18.1■□□□□ 0.49
CTCF-202ENST00000401394 HIST1H2BDP58876 126 aa18.1■□□□□ 0.49
CTCF-202ENST00000401394 RAB2AP61019 212 aa18.1■□□□□ 0.49
CTCF-202ENST00000401394 HIST1H2BCP62807 126 aa18.1■□□□□ 0.49
CTCF-202ENST00000401394 GNMTQ14749 295 aa18.1■□□□□ 0.49
CTCF-202ENST00000401394 RHEBQ15382 184 aa18.1■□□□□ 0.49
CTCF-202ENST00000401394 HIST2H2BEQ16778 126 aa18.1■□□□□ 0.49
CTCF-202ENST00000401394 HIST2H2BFQ5QNW6 126 aaPredicted RBP18.1■□□□□ 0.49
CTCF-202ENST00000401394 TBC1D26Q86UD7 250 aa18.1■□□□□ 0.49
CTCF-202ENST00000401394 LGI3Q8N145 548 aa18.1■□□□□ 0.49
CTCF-202ENST00000401394 HIST1H2BHQ93079 126 aa18.1■□□□□ 0.49
CTCF-202ENST00000401394 HIST1H2BNQ99877 126 aa18.1■□□□□ 0.49
CTCF-202ENST00000401394 HIST1H2BMQ99879 126 aa18.1■□□□□ 0.49
CTCF-202ENST00000401394 VSIRQ9H7M9 311 aa18.1■□□□□ 0.49
CTCF-202ENST00000401394 TLX3O43711 291 aaPredicted RBP18.1■□□□□ 0.49
CTCF-202ENST00000401394 RNF224P0DH78 156 aa18.1■□□□□ 0.49
CTCF-202ENST00000401394 ZNF32P17041 273 aa18.1■□□□□ 0.49
CTCF-202ENST00000401394 H3F3AP84243 136 aa18.1■□□□□ 0.49
CTCF-202ENST00000401394 CLEC12BQ2HXU8 276 aa18.1■□□□□ 0.49
CTCF-202ENST00000401394 ZNF818PQ6ZRF7 136 aa18.1■□□□□ 0.49
CTCF-202ENST00000401394 ZNF429Q86V71 674 aa18.1■□□□□ 0.49
CTCF-202ENST00000401394 TMEM252Q8N6L7 170 aa18.1■□□□□ 0.49
CTCF-202ENST00000401394 CCDC54Q8NEL0 328 aa18.1■□□□□ 0.49
CTCF-202ENST00000401394 PISDQ9UG56 409 aa18.1■□□□□ 0.49
CTCF-202ENST00000401394 AHCTF1Q8WYP5 2266 aa18.1■□□□□ 0.49
CTCF-202ENST00000401394 A0A0G2JMM0 328 aa18.09■□□□□ 0.49
CTCF-202ENST00000401394 A0A1W2PPB8 328 aa18.09■□□□□ 0.49
CTCF-202ENST00000401394 A0A1W2PRS3 328 aa18.09■□□□□ 0.49
CTCF-202ENST00000401394 KIR3DP1A8MWS1 328 aa18.09■□□□□ 0.49
CTCF-202ENST00000401394 PPYP01298 95 aa18.09■□□□□ 0.49
CTCF-202ENST00000401394 SRP19P09132 144 aaKnown RBP18.09■□□□□ 0.49
CTCF-202ENST00000401394 HOXA5P20719 270 aa18.09■□□□□ 0.49
CTCF-202ENST00000401394 STARD6P59095 220 aa18.09■□□□□ 0.49
CTCF-202ENST00000401394 PBDC1Q9BVG4 233 aa18.09■□□□□ 0.49
CTCF-202ENST00000401394 CALHM2Q9HA72 323 aa18.09■□□□□ 0.49
CTCF-202ENST00000401394 UBE2J1Q9Y385 318 aaPredicted RBP18.09■□□□□ 0.49
CTCF-202ENST00000401394 TRAV39A0A0B4J263 110 aa18.09■□□□□ 0.49
CTCF-202ENST00000401394 A0A1W2PQM1 296 aa18.09■□□□□ 0.49
CTCF-202ENST00000401394 IFNA17P01571 189 aa18.09■□□□□ 0.49
CTCF-202ENST00000401394 CCNOP22674 350 aa18.09■□□□□ 0.49
CTCF-202ENST00000401394 OTX1P32242 354 aaPredicted RBP18.09■□□□□ 0.49
CTCF-202ENST00000401394 RBP2P50120 134 aa18.09■□□□□ 0.49
CTCF-202ENST00000401394 AFF3P51826 1226 aaKnown RBP18.09■□□□□ 0.49
CTCF-202ENST00000401394 LSM6P62312 80 aaKnown RBP18.09■□□□□ 0.49
CTCF-202ENST00000401394 ICAM4Q14773 271 aa18.09■□□□□ 0.49
CTCF-202ENST00000401394 SLC25A26Q70HW3 274 aa18.09■□□□□ 0.49
CTCF-202ENST00000401394 A0A0G2JRQ6 117 aa18.09■□□□□ 0.49
CTCF-202ENST00000401394 MPPED1O15442 326 aa18.09■□□□□ 0.49
CTCF-202ENST00000401394 NRASP01111 189 aa18.09■□□□□ 0.49
CTCF-202ENST00000401394 CTSSP25774 331 aa18.09■□□□□ 0.49
CTCF-202ENST00000401394 GPX4P36969 197 aaPredicted RBP18.09■□□□□ 0.49
CTCF-202ENST00000401394 NKX2-1P43699 371 aaPredicted RBP18.09■□□□□ 0.49
CTCF-202ENST00000401394 HAAOP46952 286 aa18.09■□□□□ 0.49
CTCF-202ENST00000401394 ZNF133P52736 654 aaPredicted RBP18.09■□□□□ 0.49
CTCF-202ENST00000401394 YRDCQ86U90 279 aaKnown RBP18.09■□□□□ 0.49
CTCF-202ENST00000401394 GAPTQ8N292 157 aa18.09■□□□□ 0.49
CTCF-202ENST00000401394 OSR2Q8N2R0 312 aa18.09■□□□□ 0.49
CTCF-202ENST00000401394 SMOC1Q9H4F8 434 aa18.09■□□□□ 0.49
CTCF-202ENST00000401394 OCIAD1Q9NX40 245 aa18.09■□□□□ 0.49
CTCF-202ENST00000401394 PI4KAP42356 2102 aa18.08■□□□□ 0.49
CTCF-202ENST00000401394 MPV17LQ2QL34 196 aa18.08■□□□□ 0.49
CTCF-202ENST00000401394 CACNA1EQ15878 2313 aa18.08■□□□□ 0.48
CTCF-202ENST00000401394 CHD3Q12873 2000 aaKnown RBP18.08■□□□□ 0.48
CTCF-202ENST00000401394 ZIC3O60481 467 aa18.08■□□□□ 0.48
CTCF-202ENST00000401394 MMP9P14780 707 aa18.08■□□□□ 0.48
CTCF-202ENST00000401394 HERV-K104P61576 105 aa18.08■□□□□ 0.48
CTCF-202ENST00000401394 TMEM267Q0VDI3 215 aaPredicted RBP18.08■□□□□ 0.48
CTCF-202ENST00000401394 GPR157Q5UAW9 335 aa18.08■□□□□ 0.48
CTCF-202ENST00000401394 RNF138Q8WVD3 245 aa18.08■□□□□ 0.48
CTCF-202ENST00000401394 CHST1O43916 411 aa18.07■□□□□ 0.48
CTCF-202ENST00000401394 FAM189A2Q15884 450 aa18.07■□□□□ 0.48
CTCF-202ENST00000401394 OR5L2Q8NGL0 311 aa18.07■□□□□ 0.48
CTCF-202ENST00000401394 MOB3AQ96BX8 217 aa18.07■□□□□ 0.48
CTCF-202ENST00000401394 RSG1Q9BU20 258 aa18.07■□□□□ 0.48
CTCF-202ENST00000401394 TGIF2Q9GZN2 237 aa18.07■□□□□ 0.48
CTCF-202ENST00000401394 ZFP92A6NM28 416 aa18.07■□□□□ 0.48
CTCF-202ENST00000401394 PLCXD3Q63HM9 321 aa18.07■□□□□ 0.48
CTCF-202ENST00000401394 ZNF880Q6PDB4 577 aa18.07■□□□□ 0.48
CTCF-202ENST00000401394 ZNF695Q8IW36 515 aa18.07■□□□□ 0.48
CTCF-202ENST00000401394 CCL28Q9NRJ3 127 aa18.07■□□□□ 0.48
CTCF-202ENST00000401394 RPS18P62269 152 aaKnown RBP18.06■□□□□ 0.48
CTCF-202ENST00000401394 GAMTQ14353 236 aa18.06■□□□□ 0.48
CTCF-202ENST00000401394 IL13RA2Q14627 380 aa18.06■□□□□ 0.48
CTCF-202ENST00000401394 OR14L1PQ8NHC6 308 aa18.06■□□□□ 0.48
CTCF-202ENST00000401394 ABHD5Q8WTS1 349 aa18.06■□□□□ 0.48
CTCF-202ENST00000401394 SPTSSAQ969W0 71 aa18.06■□□□□ 0.48
CTCF-202ENST00000401394 PROK2Q9HC23 129 aa18.06■□□□□ 0.48
CTCF-202ENST00000401394 GNG13Q9P2W3 67 aa18.06■□□□□ 0.48
CTCF-202ENST00000401394 WSB1Q9Y6I7 421 aa18.06■□□□□ 0.48
CTCF-202ENST00000401394 FABP4P15090 132 aa18.06■□□□□ 0.48
CTCF-202ENST00000401394 PMELP40967 661 aa18.06■□□□□ 0.48
CTCF-202ENST00000401394 HIKESHIQ53FT3 197 aa18.06■□□□□ 0.48
CTCF-202ENST00000401394 SSX7Q7RTT5 188 aa18.06■□□□□ 0.48
CTCF-202ENST00000401394 TMEM54Q969K7 222 aa18.06■□□□□ 0.48
CTCF-202ENST00000401394 SUCNR1Q9BXA5 334 aa18.06■□□□□ 0.48
CTCF-202ENST00000401394 IGLV3-12A0A075B6K2 115 aa18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms