RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 FRYLO94915 3013 aa10.95□□□□□ -0.66
SHMT1-205ENST00000395684 ZNF716A6NP11 495 aa10.95□□□□□ -0.66
SHMT1-205ENST00000395684 PROB1E7EW31 1015 aa10.95□□□□□ -0.66
SHMT1-205ENST00000395684 CLN5O75503 358 aa10.95□□□□□ -0.66
SHMT1-205ENST00000395684 NKX2-1P43699 371 aaPredicted RBP10.95□□□□□ -0.66
SHMT1-205ENST00000395684 CXorf66Q5JRM2 361 aaPredicted RBP10.95□□□□□ -0.66
SHMT1-205ENST00000395684 TBC1D26Q86UD7 250 aa10.95□□□□□ -0.66
SHMT1-205ENST00000395684 ODF3L1Q8IXM7 274 aa10.95□□□□□ -0.66
SHMT1-205ENST00000395684 ZNF100Q8IYN0 542 aa10.95□□□□□ -0.66
SHMT1-205ENST00000395684 LFNGQ8NES3 379 aa10.95□□□□□ -0.66
SHMT1-205ENST00000395684 CPT1CQ8TCG5 803 aa10.95□□□□□ -0.66
SHMT1-205ENST00000395684 SLAMF9Q96A28 289 aa10.95□□□□□ -0.66
SHMT1-205ENST00000395684 OR2H1Q9GZK4 316 aa10.95□□□□□ -0.66
SHMT1-205ENST00000395684 ZNF700Q9H0M5 742 aa10.95□□□□□ -0.66
SHMT1-205ENST00000395684 A0A0G2JMM0 328 aa10.94□□□□□ -0.66
SHMT1-205ENST00000395684 A0A1W2PPB8 328 aa10.94□□□□□ -0.66
SHMT1-205ENST00000395684 A0A1W2PRS3 328 aa10.94□□□□□ -0.66
SHMT1-205ENST00000395684 RBFOX3A6NFN3 312 aa10.94□□□□□ -0.66
SHMT1-205ENST00000395684 KIR3DP1A8MWS1 328 aa10.94□□□□□ -0.66
SHMT1-205ENST00000395684 TXNL1O43396 289 aa10.94□□□□□ -0.66
SHMT1-205ENST00000395684 FGF5P12034 268 aa10.94□□□□□ -0.66
SHMT1-205ENST00000395684 EDN3P14138 238 aa10.94□□□□□ -0.66
SHMT1-205ENST00000395684 ITGA3P26006 1051 aa10.94□□□□□ -0.66
SHMT1-205ENST00000395684 MAS1LP35410 378 aa10.94□□□□□ -0.66
SHMT1-205ENST00000395684 RGS19P49795 217 aa10.94□□□□□ -0.66
SHMT1-205ENST00000395684 OR8B8Q15620 311 aa10.94□□□□□ -0.66
SHMT1-205ENST00000395684 EXT1Q16394 746 aa10.94□□□□□ -0.66
SHMT1-205ENST00000395684 CEACAM16Q2WEN9 425 aa10.94□□□□□ -0.66
SHMT1-205ENST00000395684 SLC25A26Q70HW3 274 aa10.94□□□□□ -0.66
SHMT1-205ENST00000395684 RPS19BP1Q86WX3 136 aaKnown RBP10.94□□□□□ -0.66
SHMT1-205ENST00000395684 ZNF611Q8N823 705 aa10.94□□□□□ -0.66
SHMT1-205ENST00000395684 SUMF2Q8NBJ7 301 aa10.94□□□□□ -0.66
SHMT1-205ENST00000395684 OR14L1PQ8NHC6 308 aa10.94□□□□□ -0.66
SHMT1-205ENST00000395684 SAP25Q8TEE9 199 aa10.94□□□□□ -0.66
SHMT1-205ENST00000395684 TMEM56Q96MV1 263 aa10.94□□□□□ -0.66
SHMT1-205ENST00000395684 FOXB1Q99853 325 aa10.94□□□□□ -0.66
SHMT1-205ENST00000395684 PLSCR2Q9NRY7 297 aa10.94□□□□□ -0.66
SHMT1-205ENST00000395684 GLRX2Q9NS18 164 aa10.94□□□□□ -0.66
SHMT1-205ENST00000395684 TMEM56-RWDD3S4R434 201 aa10.94□□□□□ -0.66
SHMT1-205ENST00000395684 AP4M1O00189 453 aa10.94□□□□□ -0.66
SHMT1-205ENST00000395684 SSSCA1O60232 199 aa10.94□□□□□ -0.66
SHMT1-205ENST00000395684 OR2C1O95371 312 aa10.94□□□□□ -0.66
SHMT1-205ENST00000395684 TMEM50AO95807 157 aa10.94□□□□□ -0.66
SHMT1-205ENST00000395684 CYC1P08574 325 aa10.94□□□□□ -0.66
SHMT1-205ENST00000395684 CARD18P57730 90 aa10.94□□□□□ -0.66
SHMT1-205ENST00000395684 RAB1AP62820 205 aa10.94□□□□□ -0.66
SHMT1-205ENST00000395684 ZNF266Q14584 549 aa10.94□□□□□ -0.66
SHMT1-205ENST00000395684 TRIM61Q5EBN2 209 aa10.94□□□□□ -0.66
SHMT1-205ENST00000395684 AAED1Q7RTV5 226 aa10.94□□□□□ -0.66
SHMT1-205ENST00000395684 GGNQ86UU5 652 aa10.94□□□□□ -0.66
SHMT1-205ENST00000395684 SELENOHQ8IZQ5 122 aaKnown RBP10.94□□□□□ -0.66
SHMT1-205ENST00000395684 TMEM252Q8N6L7 170 aa10.94□□□□□ -0.66
SHMT1-205ENST00000395684 UBE2J1Q9Y385 318 aaPredicted RBP10.94□□□□□ -0.66
SHMT1-205ENST00000395684 ZNF816-ZNF321PA0A0X1KG74 233 aa10.93□□□□□ -0.66
SHMT1-205ENST00000395684 K7ESF4 209 aa10.93□□□□□ -0.66
SHMT1-205ENST00000395684 STARD6P59095 220 aa10.93□□□□□ -0.66
SHMT1-205ENST00000395684 RND3P61587 244 aa10.93□□□□□ -0.66
SHMT1-205ENST00000395684 HAGHQ16775 308 aa10.93□□□□□ -0.66
SHMT1-205ENST00000395684 HEPN1Q6WQI6 88 aa10.93□□□□□ -0.66
SHMT1-205ENST00000395684 ZNF818PQ6ZRF7 136 aa10.93□□□□□ -0.66
SHMT1-205ENST00000395684 ZNF695Q8IW36 515 aa10.93□□□□□ -0.66
SHMT1-205ENST00000395684 OR5C1Q8NGR4 320 aa10.93□□□□□ -0.66
SHMT1-205ENST00000395684 MR1Q95460 341 aa10.93□□□□□ -0.66
SHMT1-205ENST00000395684 HS3ST6Q96QI5 342 aa10.93□□□□□ -0.66
SHMT1-205ENST00000395684 PAPOLGQ9BWT3 736 aaKnown RBP10.93□□□□□ -0.66
SHMT1-205ENST00000395684 PLEKHF2Q9H8W4 249 aa10.93□□□□□ -0.66
SHMT1-205ENST00000395684 LYRM2Q9NU23 88 aaPredicted RBP10.93□□□□□ -0.66
SHMT1-205ENST00000395684 WNT16Q9UBV4 365 aa10.93□□□□□ -0.66
SHMT1-205ENST00000395684 MIOXQ9UGB7 285 aa10.93□□□□□ -0.66
SHMT1-205ENST00000395684 ZNF391Q9UJN7 358 aa10.93□□□□□ -0.66
SHMT1-205ENST00000395684 GJE1A6NN92 205 aa10.93□□□□□ -0.66
SHMT1-205ENST00000395684 ZNF727A8MUV8 499 aa10.93□□□□□ -0.66
SHMT1-205ENST00000395684 ZNHIT1O43257 154 aa10.93□□□□□ -0.66
SHMT1-205ENST00000395684 PPIHO43447 177 aaKnown RBP10.93□□□□□ -0.66
SHMT1-205ENST00000395684 ADAM20O43506 726 aa10.93□□□□□ -0.66
SHMT1-205ENST00000395684 CXCL13O43927 109 aa10.93□□□□□ -0.66
SHMT1-205ENST00000395684 PITX3O75364 302 aa10.93□□□□□ -0.66
SHMT1-205ENST00000395684 CST7O76096 145 aa10.93□□□□□ -0.66
SHMT1-205ENST00000395684 SCTP09683 121 aa10.93□□□□□ -0.66
SHMT1-205ENST00000395684 EPHA1P21709 976 aa10.93□□□□□ -0.66
SHMT1-205ENST00000395684 HIKESHIQ53FT3 197 aa10.93□□□□□ -0.66
SHMT1-205ENST00000395684 SPIN3Q5JUX0 258 aa10.93□□□□□ -0.66
SHMT1-205ENST00000395684 NCMAPQ5T1S8 102 aa10.93□□□□□ -0.66
SHMT1-205ENST00000395684 SP5Q6BEB4 398 aaPredicted RBP10.93□□□□□ -0.66
SHMT1-205ENST00000395684 DPPA2Q7Z7J5 298 aa10.93□□□□□ -0.66
SHMT1-205ENST00000395684 M1APQ8TC57 530 aa10.93□□□□□ -0.66
SHMT1-205ENST00000395684 TCEAL7Q9BRU2 100 aa10.93□□□□□ -0.66
SHMT1-205ENST00000395684 SMDT1Q9H4I9 107 aa10.93□□□□□ -0.66
SHMT1-205ENST00000395684 CCDC163A0A0D9SF12 145 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 RPL36A-HNRNPH2H7BZ11 118 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 SLC33A1O00400 549 aaPredicted RBP10.92□□□□□ -0.66
SHMT1-205ENST00000395684 FBP1P09467 338 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 MLF1P58340 268 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 TSC22D1Q15714 1073 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 GAPTQ8N292 157 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 AGBL5Q8NDL9 886 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 CPEB3Q8NE35 698 aaKnown RBP10.92□□□□□ -0.66
SHMT1-205ENST00000395684 EXTL1Q92935 676 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 MUCL1Q96DR8 90 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 OR51M1Q9H341 326 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms