RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 NCR3LG1Q68D85 454 aa17.81■□□□□ 0.44
CLN3-207ENST00000395653 AWAT2Q6E213 333 aa17.81■□□□□ 0.44
CLN3-207ENST00000395653 GLIPR1L1Q6UWM5 242 aa17.81■□□□□ 0.44
CLN3-207ENST00000395653 RBMS3Q6XE24 437 aaKnown RBP17.81■□□□□ 0.44
CLN3-207ENST00000395653 C11orf42Q8N5U0 333 aa17.81■□□□□ 0.44
CLN3-207ENST00000395653 OR4D6Q8NGJ1 314 aa17.81■□□□□ 0.44
CLN3-207ENST00000395653 NDUFB11Q9NX14 153 aa17.81■□□□□ 0.44
CLN3-207ENST00000395653 ST3GAL6Q9Y274 331 aa17.81■□□□□ 0.44
CLN3-207ENST00000395653 hCG_1809904A0A1W2PP81 198 aa17.8■□□□□ 0.44
CLN3-207ENST00000395653 A0A1W2PPE2 198 aa17.8■□□□□ 0.44
CLN3-207ENST00000395653 A0A1W2PR64 198 aa17.8■□□□□ 0.44
CLN3-207ENST00000395653 A0A1W2PRV1 198 aa17.8■□□□□ 0.44
CLN3-207ENST00000395653 hADV38S2A0JD32 116 aa17.8■□□□□ 0.44
CLN3-207ENST00000395653 RNASEK-C17orf49H0YIS7 233 aa17.8■□□□□ 0.44
CLN3-207ENST00000395653 VENTXO95231 258 aa17.8■□□□□ 0.44
CLN3-207ENST00000395653 GTF2F2P13984 249 aa17.8■□□□□ 0.44
CLN3-207ENST00000395653 CCL3L1P16619 93 aa17.8■□□□□ 0.44
CLN3-207ENST00000395653 P2RX3P56373 397 aa17.8■□□□□ 0.44
CLN3-207ENST00000395653 RBM11P57052 281 aaKnown RBP17.8■□□□□ 0.44
CLN3-207ENST00000395653 FABP5Q01469 135 aa17.8■□□□□ 0.44
CLN3-207ENST00000395653 RUSC1-AS1Q66K80 236 aa17.8■□□□□ 0.44
CLN3-207ENST00000395653 GLT8D1Q68CQ7 371 aa17.8■□□□□ 0.44
CLN3-207ENST00000395653 LINC00596Q86U02 117 aa17.8■□□□□ 0.44
CLN3-207ENST00000395653 SIGLECL1Q8N7X8 197 aa17.8■□□□□ 0.44
CLN3-207ENST00000395653 TMEM158Q8WZ71 300 aa17.8■□□□□ 0.44
CLN3-207ENST00000395653 C1orf147Q96MC9 270 aaPredicted RBP17.8■□□□□ 0.44
CLN3-207ENST00000395653 ZNF48Q96MX3 618 aaPredicted RBP17.8■□□□□ 0.44
CLN3-207ENST00000395653 PPA2Q9H2U2 334 aa17.8■□□□□ 0.44
CLN3-207ENST00000395653 LINC00312Q9Y6C7 94 aa17.8■□□□□ 0.44
CLN3-207ENST00000395653 FUOMA2VDF0 154 aa17.79■□□□□ 0.44
CLN3-207ENST00000395653 RBP4P02753 201 aa17.79■□□□□ 0.44
CLN3-207ENST00000395653 ZNF728P0DKX0 622 aa17.79■□□□□ 0.44
CLN3-207ENST00000395653 DLX6P56179 175 aa17.79■□□□□ 0.44
CLN3-207ENST00000395653 SRSF2Q01130 221 aaKnown RBP17.79■□□□□ 0.44
CLN3-207ENST00000395653 TCF23Q7RTU1 214 aa17.79■□□□□ 0.44
CLN3-207ENST00000395653 PDZD9Q8IXQ8 264 aa17.79■□□□□ 0.44
CLN3-207ENST00000395653 TPRX1Q8N7U7 411 aa17.79■□□□□ 0.44
CLN3-207ENST00000395653 MRPS24Q96EL2 167 aaKnown RBP17.79■□□□□ 0.44
CLN3-207ENST00000395653 IFT22Q9H7X7 185 aa17.79■□□□□ 0.44
CLN3-207ENST00000395653 GHRLQ9UBU3 117 aa17.79■□□□□ 0.44
CLN3-207ENST00000395653 SOX21Q9Y651 276 aaPredicted RBP17.79■□□□□ 0.44
CLN3-207ENST00000395653 COL6A5A8TX70 2615 aa17.78■□□□□ 0.44
CLN3-207ENST00000395653 TRAV24A0A0B4J272 114 aa17.78■□□□□ 0.44
CLN3-207ENST00000395653 A0A1W2PP11 408 aa17.78■□□□□ 0.44
CLN3-207ENST00000395653 C17orf98A8MV24 154 aa17.78■□□□□ 0.44
CLN3-207ENST00000395653 CCRL2O00421 344 aa17.78■□□□□ 0.44
CLN3-207ENST00000395653 CD37P11049 281 aa17.78■□□□□ 0.44
CLN3-207ENST00000395653 MPV17LQ2QL34 196 aa17.78■□□□□ 0.44
CLN3-207ENST00000395653 ZNF714Q96N38 554 aa17.78■□□□□ 0.44
CLN3-207ENST00000395653 PRDM13Q9H4Q3 707 aa17.78■□□□□ 0.44
CLN3-207ENST00000395653 GEMIN2O14893 280 aaKnown RBP17.77■□□□□ 0.44
CLN3-207ENST00000395653 PSMB9P28065 219 aa17.77■□□□□ 0.44
CLN3-207ENST00000395653 KCNJ3P48549 501 aa17.77■□□□□ 0.44
CLN3-207ENST00000395653 UBE2E1P51965 193 aa17.77■□□□□ 0.44
CLN3-207ENST00000395653 DLX1P56177 255 aa17.77■□□□□ 0.44
CLN3-207ENST00000395653 AESQ08117 197 aa17.77■□□□□ 0.44
CLN3-207ENST00000395653 KLRD1Q13241 179 aa17.77■□□□□ 0.44
CLN3-207ENST00000395653 KRTAP24-1Q3LI83 254 aa17.77■□□□□ 0.44
CLN3-207ENST00000395653 PAN3Q58A45 887 aaKnown RBP17.77■□□□□ 0.44
CLN3-207ENST00000395653 C1orf100Q5SVJ3 147 aa17.77■□□□□ 0.44
CLN3-207ENST00000395653 CD200R1LQ6Q8B3 271 aa17.77■□□□□ 0.44
CLN3-207ENST00000395653 ZFAND2BQ8WV99 257 aa17.77■□□□□ 0.44
CLN3-207ENST00000395653 MDFIQ99750 246 aa17.77■□□□□ 0.44
CLN3-207ENST00000395653 RNF212BA8MTL3 300 aa17.76■□□□□ 0.43
CLN3-207ENST00000395653 OR7C1O76099 320 aaPredicted RBP17.76■□□□□ 0.43
CLN3-207ENST00000395653 UBBP0CG47 229 aa17.76■□□□□ 0.43
CLN3-207ENST00000395653 GALP22466 123 aa17.76■□□□□ 0.43
CLN3-207ENST00000395653 CALRP27797 417 aaKnown RBP17.76■□□□□ 0.43
CLN3-207ENST00000395653 ERVFRD-1P60508 538 aa17.76■□□□□ 0.43
CLN3-207ENST00000395653 PRB3Q04118 309 aaPredicted RBP17.76■□□□□ 0.43
CLN3-207ENST00000395653 DEFB112Q30KQ8 113 aa17.76■□□□□ 0.43
CLN3-207ENST00000395653 HCP5Q6MZN7 132 aa17.76■□□□□ 0.43
CLN3-207ENST00000395653 PIP4P2Q8N4L2 257 aa17.76■□□□□ 0.43
CLN3-207ENST00000395653 ZDHHC22Q8N966 263 aa17.76■□□□□ 0.43
CLN3-207ENST00000395653 COQ2Q96H96 371 aa17.76■□□□□ 0.43
CLN3-207ENST00000395653 HEXA-AS1Q9H8Q6 139 aa17.76■□□□□ 0.43
CLN3-207ENST00000395653 ESM1Q9NQ30 184 aa17.76■□□□□ 0.43
CLN3-207ENST00000395653 UBE2J1Q9Y385 318 aaPredicted RBP17.76■□□□□ 0.43
CLN3-207ENST00000395653 DSCAML1Q8TD84 2053 aa17.76■□□□□ 0.43
CLN3-207ENST00000395653 TRDV1A0A1B0GX56 115 aa17.75■□□□□ 0.43
CLN3-207ENST00000395653 PAX5Q02548 391 aa17.75■□□□□ 0.43
CLN3-207ENST00000395653 ATXN7L3Q14CW9 347 aaPredicted RBP17.75■□□□□ 0.43
CLN3-207ENST00000395653 KRBOX4Q5JUW0 171 aa17.75■□□□□ 0.43
CLN3-207ENST00000395653 TRGV10A0A0A0MS01 117 aa17.74■□□□□ 0.43
CLN3-207ENST00000395653 MDFIC2A0A1B0GVS7 189 aa17.74■□□□□ 0.43
CLN3-207ENST00000395653 ODAMA1E959 279 aa17.74■□□□□ 0.43
CLN3-207ENST00000395653 MEX3AA1L020 520 aaKnown RBP17.74■□□□□ 0.43
CLN3-207ENST00000395653 TRIM77I1YAP6 450 aa17.74■□□□□ 0.43
CLN3-207ENST00000395653 HSPB6O14558 160 aa17.74■□□□□ 0.43
CLN3-207ENST00000395653 NPFFO15130 113 aa17.74■□□□□ 0.43
CLN3-207ENST00000395653 SLC22A1O15245 554 aa17.74■□□□□ 0.43
CLN3-207ENST00000395653 MGMTP16455 207 aa17.74■□□□□ 0.43
CLN3-207ENST00000395653 GLIPR1P48060 266 aa17.74■□□□□ 0.43
CLN3-207ENST00000395653 BAMBIQ13145 260 aa17.74■□□□□ 0.43
CLN3-207ENST00000395653 TAF9Q16594 264 aa17.74■□□□□ 0.43
CLN3-207ENST00000395653 TRAPPC6BQ86SZ2 158 aa17.74■□□□□ 0.43
CLN3-207ENST00000395653 SUMF2Q8NBJ7 301 aa17.74■□□□□ 0.43
CLN3-207ENST00000395653 CORO2AQ92828 525 aa17.74■□□□□ 0.43
CLN3-207ENST00000395653 DPCDQ9BVM2 203 aaPredicted RBP17.74■□□□□ 0.43
CLN3-207ENST00000395653 BARHL1Q9BZE3 327 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms