RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 DIRAS3O95661 229 aa11.46□□□□□ -0.58
CCDC3-202ENST00000378839 ECI1P42126 302 aa11.46□□□□□ -0.58
CCDC3-202ENST00000378839 PMP22Q01453 160 aa11.46□□□□□ -0.58
CCDC3-202ENST00000378839 CEACAM21Q3KPI0 293 aa11.46□□□□□ -0.58
CCDC3-202ENST00000378839 LDLRAD3Q86YD5 345 aa11.46□□□□□ -0.58
CCDC3-202ENST00000378839 GALNT14Q96FL9 552 aa11.46□□□□□ -0.58
CCDC3-202ENST00000378839 WDYHV1Q96HA8 205 aa11.46□□□□□ -0.58
CCDC3-202ENST00000378839 SMIM3Q9BZL3 60 aa11.46□□□□□ -0.58
CCDC3-202ENST00000378839 DNAJB11Q9UBS4 358 aa11.46□□□□□ -0.58
CCDC3-202ENST00000378839 DSPP15924 2871 aaKnown RBP11.45□□□□□ -0.58
CCDC3-202ENST00000378839 IGKV1-6A0A0C4DH72 117 aa11.45□□□□□ -0.58
CCDC3-202ENST00000378839 PRR33A8MZF0 331 aa11.45□□□□□ -0.58
CCDC3-202ENST00000378839 LRP3O75074 770 aa11.45□□□□□ -0.58
CCDC3-202ENST00000378839 TMEM211Q6ICI0 200 aa11.45□□□□□ -0.58
CCDC3-202ENST00000378839 LOXL4Q96JB6 756 aa11.45□□□□□ -0.58
CCDC3-202ENST00000378839 ZNF286AQ9HBT8 521 aa11.45□□□□□ -0.58
CCDC3-202ENST00000378839 WFDC1Q9HC57 220 aa11.45□□□□□ -0.58
CCDC3-202ENST00000378839 FAM186AA6NE01 2351 aa11.45□□□□□ -0.58
CCDC3-202ENST00000378839 NDUFA2O43678 99 aa11.45□□□□□ -0.58
CCDC3-202ENST00000378839 SCGB1D2O95969 90 aa11.45□□□□□ -0.58
CCDC3-202ENST00000378839 CST4P01036 141 aa11.45□□□□□ -0.58
CCDC3-202ENST00000378839 RPL12P30050 165 aaKnown RBP11.45□□□□□ -0.58
CCDC3-202ENST00000378839 GNRHRP30968 328 aa11.45□□□□□ -0.58
CCDC3-202ENST00000378839 SWI5Q1ZZU3 235 aa11.45□□□□□ -0.58
CCDC3-202ENST00000378839 MRPL21Q7Z2W9 205 aaKnown RBP11.45□□□□□ -0.58
CCDC3-202ENST00000378839 ZFP62Q8NB50 900 aaPredicted RBP11.45□□□□□ -0.58
CCDC3-202ENST00000378839 RSRP1Q9BUV0 290 aa11.45□□□□□ -0.58
CCDC3-202ENST00000378839 COL25A1Q9BXS0 654 aaPredicted RBP11.45□□□□□ -0.58
CCDC3-202ENST00000378839 FBXL17Q9UF56 701 aa11.45□□□□□ -0.58
CCDC3-202ENST00000378839 BOD1L1Q8NFC6 3051 aa11.45□□□□□ -0.58
CCDC3-202ENST00000378839 ARGFXA6NJG6 315 aa11.44□□□□□ -0.58
CCDC3-202ENST00000378839 NAPSAO96009 420 aa11.44□□□□□ -0.58
CCDC3-202ENST00000378839 CELA3BP08861 270 aa11.44□□□□□ -0.58
CCDC3-202ENST00000378839 AKR1C3P42330 323 aa11.44□□□□□ -0.58
CCDC3-202ENST00000378839 LPAR6P43657 344 aa11.44□□□□□ -0.58
CCDC3-202ENST00000378839 TMEM33P57088 247 aa11.44□□□□□ -0.58
CCDC3-202ENST00000378839 GUCA2BQ16661 112 aa11.44□□□□□ -0.58
CCDC3-202ENST00000378839 SPATA46Q5T0L3 261 aa11.44□□□□□ -0.58
CCDC3-202ENST00000378839 TMEM268Q5VZI3 342 aa11.44□□□□□ -0.58
CCDC3-202ENST00000378839 ZDHHC23Q8IYP9 409 aa11.44□□□□□ -0.58
CCDC3-202ENST00000378839 APOBEC3DQ96AK3 386 aaPredicted RBP11.44□□□□□ -0.58
CCDC3-202ENST00000378839 TECTBQ96PL2 329 aa11.44□□□□□ -0.58
CCDC3-202ENST00000378839 PIGMQ9H3S5 423 aa11.44□□□□□ -0.58
CCDC3-202ENST00000378839 RNF122Q9H9V4 155 aa11.44□□□□□ -0.58
CCDC3-202ENST00000378839 ABI3Q9P2A4 366 aa11.44□□□□□ -0.58
CCDC3-202ENST00000378839 IGKV1D-13A0A0B4J2D9 117 aa11.44□□□□□ -0.58
CCDC3-202ENST00000378839 K7EPK0 472 aa11.44□□□□□ -0.58
CCDC3-202ENST00000378839 GALR2O43603 387 aaPredicted RBP11.44□□□□□ -0.58
CCDC3-202ENST00000378839 PPYP01298 95 aa11.44□□□□□ -0.58
CCDC3-202ENST00000378839 IGKV1-13P0DP09 117 aa11.44□□□□□ -0.58
CCDC3-202ENST00000378839 FGF12P61328 243 aa11.44□□□□□ -0.58
CCDC3-202ENST00000378839 RBMS3Q6XE24 437 aaKnown RBP11.44□□□□□ -0.58
CCDC3-202ENST00000378839 C17orf78Q8N4C9 275 aa11.44□□□□□ -0.58
CCDC3-202ENST00000378839 FAM71E2Q8N5Q1 922 aa11.44□□□□□ -0.58
CCDC3-202ENST00000378839 PRRX2Q99811 253 aa11.44□□□□□ -0.58
CCDC3-202ENST00000378839 NKX6-2Q9C056 277 aaPredicted RBP11.44□□□□□ -0.58
CCDC3-202ENST00000378839 Q9N2K0 584 aa11.44□□□□□ -0.58
CCDC3-202ENST00000378839 PCNX2A6NKB5 2137 aa11.44□□□□□ -0.58
CCDC3-202ENST00000378839 A0A1W2PR80 420 aa11.44□□□□□ -0.58
CCDC3-202ENST00000378839 TMEM218A2RU14 115 aa11.44□□□□□ -0.58
CCDC3-202ENST00000378839 CD300LBA8K4G0 201 aa11.44□□□□□ -0.58
CCDC3-202ENST00000378839 PRSS44E7EML9 344 aa11.44□□□□□ -0.58
CCDC3-202ENST00000378839 H7C1Q1 480 aa11.44□□□□□ -0.58
CCDC3-202ENST00000378839 COX5BP10606 129 aa11.44□□□□□ -0.58
CCDC3-202ENST00000378839 PVALBP20472 110 aaPredicted RBP11.44□□□□□ -0.58
CCDC3-202ENST00000378839 ABCA11PQ4W5N1 156 aa11.44□□□□□ -0.58
CCDC3-202ENST00000378839 LIAT1Q6ZQX7 453 aa11.44□□□□□ -0.58
CCDC3-202ENST00000378839 RNF141Q8WVD5 230 aa11.44□□□□□ -0.58
CCDC3-202ENST00000378839 OR5P3Q8WZ94 311 aa11.44□□□□□ -0.58
CCDC3-202ENST00000378839 RCC2Q9P258 522 aaKnown RBP11.44□□□□□ -0.58
CCDC3-202ENST00000378839 LPAR3Q9UBY5 353 aa11.44□□□□□ -0.58
CCDC3-202ENST00000378839 FAM96BQ9Y3D0 163 aa11.44□□□□□ -0.58
CCDC3-202ENST00000378839 ZNF705EA8MWA4 302 aaPredicted RBP11.43□□□□□ -0.58
CCDC3-202ENST00000378839 F8W036 122 aa11.43□□□□□ -0.58
CCDC3-202ENST00000378839 RHBDL1O75783 438 aa11.43□□□□□ -0.58
CCDC3-202ENST00000378839 SLC10A1Q14973 349 aa11.43□□□□□ -0.58
CCDC3-202ENST00000378839 MDP1Q86V88 176 aa11.43□□□□□ -0.58
CCDC3-202ENST00000378839 IL22RA1Q8N6P7 574 aa11.43□□□□□ -0.58
CCDC3-202ENST00000378839 LRTM2Q8N967 370 aa11.43□□□□□ -0.58
CCDC3-202ENST00000378839 TAF9BQ9HBM6 251 aa11.43□□□□□ -0.58
CCDC3-202ENST00000378839 SLC35G3Q8N808 338 aa11.43□□□□□ -0.58
CCDC3-202ENST00000378839 OR5T2Q8NGG2 359 aa11.43□□□□□ -0.58
CCDC3-202ENST00000378839 OR1K1Q8NGR3 316 aa11.43□□□□□ -0.58
CCDC3-202ENST00000378839 BCL2L2Q92843 193 aaPredicted RBP11.43□□□□□ -0.58
CCDC3-202ENST00000378839 PHF1O43189 567 aaPredicted RBP11.42□□□□□ -0.58
CCDC3-202ENST00000378839 FBXO24O75426 580 aa11.42□□□□□ -0.58
CCDC3-202ENST00000378839 UCP3P55916 312 aa11.42□□□□□ -0.58
CCDC3-202ENST00000378839 POLR2GP62487 172 aaKnown RBP eCLIP11.42□□□□□ -0.58
CCDC3-202ENST00000378839 RNPS1Q15287 305 aaKnown RBP11.42□□□□□ -0.58
CCDC3-202ENST00000378839 HFEQ30201 348 aa11.42□□□□□ -0.58
CCDC3-202ENST00000378839 ZNF818PQ6ZRF7 136 aa11.42□□□□□ -0.58
CCDC3-202ENST00000378839 SMIM8Q96KF7 97 aa11.42□□□□□ -0.58
CCDC3-202ENST00000378839 GP6Q9HCN6 339 aa11.42□□□□□ -0.58
CCDC3-202ENST00000378839 KLF13Q9Y2Y9 288 aaPredicted RBP11.42□□□□□ -0.58
CCDC3-202ENST00000378839 ESPL1Q14674 2120 aa11.42□□□□□ -0.58
CCDC3-202ENST00000378839 C9JQL5 133 aa11.42□□□□□ -0.58
CCDC3-202ENST00000378839 PET100P0DJ07 73 aa11.42□□□□□ -0.58
CCDC3-202ENST00000378839 OR2T2Q6IF00 324 aa11.42□□□□□ -0.58
CCDC3-202ENST00000378839 WDR86Q86TI4 376 aa11.42□□□□□ -0.58
CCDC3-202ENST00000378839 PUSL1Q8N0Z8 303 aaKnown RBP11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms