RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 FKBP11Q9NYL4 201 aa10.08□□□□□ -0.8
PTPRF-203ENST00000372407 PARP14Q460N5 1801 aa10.08□□□□□ -0.8
PTPRF-203ENST00000372407 TRAV20A0A0B4J274 112 aa10.08□□□□□ -0.8
PTPRF-203ENST00000372407 LINC00862A6NCI5 91 aa10.08□□□□□ -0.8
PTPRF-203ENST00000372407 HRKO00198 91 aa10.08□□□□□ -0.8
PTPRF-203ENST00000372407 CHRNA7P36544 502 aa10.08□□□□□ -0.8
PTPRF-203ENST00000372407 PTTG1IPP53801 180 aa10.08□□□□□ -0.8
PTPRF-203ENST00000372407 PRSS12P56730 875 aa10.08□□□□□ -0.8
PTPRF-203ENST00000372407 RPS4XP62701 263 aaKnown RBP10.08□□□□□ -0.8
PTPRF-203ENST00000372407 WDR61Q9GZS3 305 aaKnown RBP10.08□□□□□ -0.8
PTPRF-203ENST00000372407 ALX4Q9H161 411 aaPredicted RBP10.08□□□□□ -0.8
PTPRF-203ENST00000372407 PRDM6Q9NQX0 595 aa10.08□□□□□ -0.8
PTPRF-203ENST00000372407 DUXBA0A1W2PPF3 345 aa10.07□□□□□ -0.8
PTPRF-203ENST00000372407 K7EQS6 105 aa10.07□□□□□ -0.8
PTPRF-203ENST00000372407 SOX15O60248 233 aa10.07□□□□□ -0.8
PTPRF-203ENST00000372407 CDS2O95674 445 aa10.07□□□□□ -0.8
PTPRF-203ENST00000372407 VSIG8P0DPA2 414 aa10.07□□□□□ -0.8
PTPRF-203ENST00000372407 TSPO2Q5TGU0 170 aa10.07□□□□□ -0.8
PTPRF-203ENST00000372407 C19orf35Q6ZS72 473 aa10.07□□□□□ -0.8
PTPRF-203ENST00000372407 LRRC29Q8WV35 223 aa10.07□□□□□ -0.8
PTPRF-203ENST00000372407 OR6C3Q9NZP0 311 aa10.07□□□□□ -0.8
PTPRF-203ENST00000372407 PPYP01298 95 aa10.07□□□□□ -0.8
PTPRF-203ENST00000372407 S100A4P26447 101 aaKnown RBP10.07□□□□□ -0.8
PTPRF-203ENST00000372407 OPRK1P41145 380 aa10.07□□□□□ -0.8
PTPRF-203ENST00000372407 GAB4Q2WGN9 574 aa10.07□□□□□ -0.8
PTPRF-203ENST00000372407 ETFRF1Q6IPR1 90 aa10.07□□□□□ -0.8
PTPRF-203ENST00000372407 GFRALQ6UXV0 394 aa10.07□□□□□ -0.8
PTPRF-203ENST00000372407 OR5D13Q8NGL4 314 aa10.07□□□□□ -0.8
PTPRF-203ENST00000372407 STARD10Q9Y365 291 aa10.07□□□□□ -0.8
PTPRF-203ENST00000372407 A0A1W2PNV4 684 aa10.07□□□□□ -0.8
PTPRF-203ENST00000372407 hADV38S2A0JD32 116 aa10.07□□□□□ -0.8
PTPRF-203ENST00000372407 AP4M1O00189 453 aa10.07□□□□□ -0.8
PTPRF-203ENST00000372407 LANCL1O43813 399 aa10.07□□□□□ -0.8
PTPRF-203ENST00000372407 EML2O95834 649 aa10.07□□□□□ -0.8
PTPRF-203ENST00000372407 CCL2P13500 99 aa10.07□□□□□ -0.8
PTPRF-203ENST00000372407 D2HGDHQ8N465 521 aa10.07□□□□□ -0.8
PTPRF-203ENST00000372407 MRGPRDQ8TDS7 321 aa10.07□□□□□ -0.8
PTPRF-203ENST00000372407 ADTRPQ96IZ2 230 aa10.07□□□□□ -0.8
PTPRF-203ENST00000372407 PARD6AQ9NPB6 346 aa10.07□□□□□ -0.8
PTPRF-203ENST00000372407 CES1P1Q9UKY3 287 aa10.07□□□□□ -0.8
PTPRF-203ENST00000372407 CCDC88CQ9P219 2028 aa10.07□□□□□ -0.8
PTPRF-203ENST00000372407 LRRC3CA6NJW4 275 aa10.06□□□□□ -0.8
PTPRF-203ENST00000372407 TRDCB7Z8K6 153 aa10.06□□□□□ -0.8
PTPRF-203ENST00000372407 FCN1O00602 326 aa10.06□□□□□ -0.8
PTPRF-203ENST00000372407 CHST1O43916 411 aa10.06□□□□□ -0.8
PTPRF-203ENST00000372407 LYZL6O75951 148 aa10.06□□□□□ -0.8
PTPRF-203ENST00000372407 GNG4P50150 75 aa10.06□□□□□ -0.8
PTPRF-203ENST00000372407 GNG10P50151 68 aa10.06□□□□□ -0.8
PTPRF-203ENST00000372407 SPCS3P61009 180 aa10.06□□□□□ -0.8
PTPRF-203ENST00000372407 AWAT1Q58HT5 328 aa10.06□□□□□ -0.8
PTPRF-203ENST00000372407 GTF2H5Q6ZYL4 71 aa10.06□□□□□ -0.8
PTPRF-203ENST00000372407 TBC1D26Q86UD7 250 aa10.06□□□□□ -0.8
PTPRF-203ENST00000372407 C11orf42Q8N5U0 333 aa10.06□□□□□ -0.8
PTPRF-203ENST00000372407 SLC2A9Q9NRM0 540 aa10.06□□□□□ -0.8
PTPRF-203ENST00000372407 SNRNP200O75643 2136 aaKnown RBP10.06□□□□□ -0.8
PTPRF-203ENST00000372407 LHX9Q9NQ69 397 aa10.06□□□□□ -0.8
PTPRF-203ENST00000372407 PCDHGA9Q9Y5G4 932 aaKnown RBP10.06□□□□□ -0.8
PTPRF-203ENST00000372407 LIPGQ9Y5X9 500 aa10.06□□□□□ -0.8
PTPRF-203ENST00000372407 A0A1W2PN81 502 aa10.06□□□□□ -0.8
PTPRF-203ENST00000372407 PTP4A3O75365 173 aa10.06□□□□□ -0.8
PTPRF-203ENST00000372407 MBPP02686 304 aaPredicted RBP10.06□□□□□ -0.8
PTPRF-203ENST00000372407 GYPAP02724 150 aa10.06□□□□□ -0.8
PTPRF-203ENST00000372407 ACAA2P42765 397 aaKnown RBP10.06□□□□□ -0.8
PTPRF-203ENST00000372407 KIR2DL1P43626 348 aaPredicted RBP10.06□□□□□ -0.8
PTPRF-203ENST00000372407 SLC26A10Q8NG04 563 aa10.06□□□□□ -0.8
PTPRF-203ENST00000372407 OR2T10Q8NGZ9 312 aa10.06□□□□□ -0.8
PTPRF-203ENST00000372407 RPEQ96AT9 228 aa10.06□□□□□ -0.8
PTPRF-203ENST00000372407 SEC11CQ9BY50 192 aa10.06□□□□□ -0.8
PTPRF-203ENST00000372407 LYRM2Q9NU23 88 aaPredicted RBP10.06□□□□□ -0.8
PTPRF-203ENST00000372407 TET1Q8NFU7 2136 aa10.06□□□□□ -0.8
PTPRF-203ENST00000372407 KIAA1324LA8MWY0 1029 aaPredicted RBP10.06□□□□□ -0.8
PTPRF-203ENST00000372407 GEMIN2O14893 280 aaKnown RBP10.06□□□□□ -0.8
PTPRF-203ENST00000372407 GATCO43716 136 aaKnown RBP10.06□□□□□ -0.8
PTPRF-203ENST00000372407 TOX4O94842 621 aa10.06□□□□□ -0.8
PTPRF-203ENST00000372407 ARG1P05089 322 aa10.06□□□□□ -0.8
PTPRF-203ENST00000372407 MYPOPQ86VE0 399 aaPredicted RBP10.06□□□□□ -0.8
PTPRF-203ENST00000372407 PTPMT1Q8WUK0 201 aaPredicted RBP10.06□□□□□ -0.8
PTPRF-203ENST00000372407 HES7Q9BYE0 225 aa10.06□□□□□ -0.8
PTPRF-203ENST00000372407 GAL3ST2Q9H3Q3 398 aa10.06□□□□□ -0.8
PTPRF-203ENST00000372407 SH2D2AQ9NP31 389 aa10.06□□□□□ -0.8
PTPRF-203ENST00000372407 SPTBN1Q01082 2364 aaKnown RBP10.06□□□□□ -0.8
PTPRF-203ENST00000372407 IGHV3-43A0A0B4J1X8 118 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 C7orf77A4D0Y5 90 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 M0QZ24 198 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 BGLAPP02818 100 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 SLC25A5P05141 298 aaKnown RBP10.05□□□□□ -0.8
PTPRF-203ENST00000372407 CST2P09228 141 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 IGHV3-43DP0DP04 118 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 CCKARP32238 428 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 KIR2DS2P43631 304 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 MEOX2P50222 304 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 DYNLT3P51808 116 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 SPEM2Q0P670 501 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 FOXO1Q12778 655 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 MPV17LQ2QL34 196 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 OR4F17Q8NGA8 305 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 OR4D10Q8NGI6 311 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 OR4S2Q8NH73 311 aa10.05□□□□□ -0.8
PTPRF-203ENST00000372407 MRPL24Q96A35 216 aaKnown RBP10.05□□□□□ -0.8
PTPRF-203ENST00000372407 SEBOXQ9HB31 216 aaPredicted RBP10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms