RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 KCNJ3P48549 501 aa12.3□□□□□ -0.44
CD48-201ENST00000368045 PPT1P50897 306 aa12.3□□□□□ -0.44
CD48-201ENST00000368045 ARF1P84077 181 aaKnown RBP12.3□□□□□ -0.44
CD48-201ENST00000368045 EWSR1Q01844 656 aaKnown RBP eCLIP12.3□□□□□ -0.44
CD48-201ENST00000368045 ZNF616Q08AN1 781 aa12.3□□□□□ -0.44
CD48-201ENST00000368045 PRDX4Q13162 271 aa12.3□□□□□ -0.44
CD48-201ENST00000368045 KIR2DS1Q14954 304 aa12.3□□□□□ -0.44
CD48-201ENST00000368045 CEACAM21Q3KPI0 293 aa12.3□□□□□ -0.44
CD48-201ENST00000368045 SLC23A3Q6PIS1 610 aa12.3□□□□□ -0.44
CD48-201ENST00000368045 LINC00596Q86U02 117 aa12.3□□□□□ -0.44
CD48-201ENST00000368045 MKXQ8IYA7 352 aa12.3□□□□□ -0.44
CD48-201ENST00000368045 ZNF565Q8N9K5 539 aa12.3□□□□□ -0.44
CD48-201ENST00000368045 OR56B2PQ8NGI1 322 aa12.3□□□□□ -0.44
CD48-201ENST00000368045 SECTM1Q8WVN6 248 aa12.3□□□□□ -0.44
CD48-201ENST00000368045 GTF3AQ92664 365 aaKnown RBP12.3□□□□□ -0.44
CD48-201ENST00000368045 ZNF845Q96IR2 970 aaPredicted RBP12.3□□□□□ -0.44
CD48-201ENST00000368045 PAPOLGQ9BWT3 736 aaKnown RBP12.3□□□□□ -0.44
CD48-201ENST00000368045 SLC25A31Q9H0C2 315 aa12.3□□□□□ -0.44
CD48-201ENST00000368045 RIMS4Q9H426 269 aaPredicted RBP12.3□□□□□ -0.44
CD48-201ENST00000368045 P4HTMQ9NXG6 502 aa12.3□□□□□ -0.44
CD48-201ENST00000368045 B4GALT7Q9UBV7 327 aa12.3□□□□□ -0.44
CD48-201ENST00000368045 UBE2J1Q9Y385 318 aaPredicted RBP12.3□□□□□ -0.44
CD48-201ENST00000368045 CLEC18AA5D8T8 446 aa12.29□□□□□ -0.44
CD48-201ENST00000368045 NME2P1O60361 137 aa12.29□□□□□ -0.44
CD48-201ENST00000368045 PITX3O75364 302 aa12.29□□□□□ -0.44
CD48-201ENST00000368045 TUSC2O75896 110 aa12.29□□□□□ -0.44
CD48-201ENST00000368045 GNRHRP30968 328 aa12.29□□□□□ -0.44
CD48-201ENST00000368045 NPBWR2P48146 333 aa12.29□□□□□ -0.44
CD48-201ENST00000368045 RAB5BP61020 215 aa12.29□□□□□ -0.44
CD48-201ENST00000368045 RNF212Q495C1 297 aa12.29□□□□□ -0.44
CD48-201ENST00000368045 IGSF11Q5DX21 431 aa12.29□□□□□ -0.44
CD48-201ENST00000368045 ZNF695Q8IW36 515 aa12.29□□□□□ -0.44
CD48-201ENST00000368045 ZDHHC23Q8IYP9 409 aa12.29□□□□□ -0.44
CD48-201ENST00000368045 OR2C3Q8N628 320 aa12.29□□□□□ -0.44
CD48-201ENST00000368045 CLEC18CQ8NCF0 446 aa12.29□□□□□ -0.44
CD48-201ENST00000368045 NAXEQ8NCW5 288 aa12.29□□□□□ -0.44
CD48-201ENST00000368045 OR8G5Q8NG78 346 aa12.29□□□□□ -0.44
CD48-201ENST00000368045 IL22RA2Q969J5 263 aa12.29□□□□□ -0.44
CD48-201ENST00000368045 APOBEC3DQ96AK3 386 aaPredicted RBP12.29□□□□□ -0.44
CD48-201ENST00000368045 PLK3Q9H4B4 646 aa12.29□□□□□ -0.44
CD48-201ENST00000368045 LOXL2Q9Y4K0 774 aa12.29□□□□□ -0.44
CD48-201ENST00000368045 PINLYPA6NC86 204 aa12.28□□□□□ -0.44
CD48-201ENST00000368045 UMAD1C9J7I0 102 aa12.28□□□□□ -0.44
CD48-201ENST00000368045 K7N7A8 449 aa12.28□□□□□ -0.44
CD48-201ENST00000368045 PRH1P02810 166 aa12.28□□□□□ -0.44
CD48-201ENST00000368045 BCL3P20749 454 aa12.28□□□□□ -0.44
CD48-201ENST00000368045 NKX2-1P43699 371 aaPredicted RBP12.28□□□□□ -0.44
CD48-201ENST00000368045 MEX3BQ6ZN04 569 aaKnown RBP12.28□□□□□ -0.44
CD48-201ENST00000368045 MRPL21Q7Z2W9 205 aaKnown RBP12.28□□□□□ -0.44
CD48-201ENST00000368045 TBC1D26Q86UD7 250 aa12.28□□□□□ -0.44
CD48-201ENST00000368045 PSMF1Q92530 271 aa12.28□□□□□ -0.44
CD48-201ENST00000368045 PLEKHF2Q9H8W4 249 aa12.28□□□□□ -0.44
CD48-201ENST00000368045 SPACA1Q9HBV2 294 aa12.28□□□□□ -0.44
CD48-201ENST00000368045 SLC7A10Q9NS82 523 aa12.28□□□□□ -0.44
CD48-201ENST00000368045 MYO7BQ6PIF6 2116 aa12.28□□□□□ -0.44
CD48-201ENST00000368045 TRBV6-6A0A0A6YYG2 114 aa12.28□□□□□ -0.44
CD48-201ENST00000368045 NKX2-6A6NCS4 301 aa12.28□□□□□ -0.44
CD48-201ENST00000368045 C19orf67A6NJJ6 358 aa12.28□□□□□ -0.44
CD48-201ENST00000368045 ZNF98A6NK75 572 aa12.28□□□□□ -0.44
CD48-201ENST00000368045 SS18L1O75177 396 aaPredicted RBP12.28□□□□□ -0.44
CD48-201ENST00000368045 SYNGR4O95473 234 aa12.28□□□□□ -0.44
CD48-201ENST00000368045 ARR3P36575 388 aa12.28□□□□□ -0.44
CD48-201ENST00000368045 LHX2P50458 406 aa12.28□□□□□ -0.44
CD48-201ENST00000368045 NHLH2Q02577 135 aa12.28□□□□□ -0.44
CD48-201ENST00000368045 PDCD1Q15116 288 aa12.28□□□□□ -0.44
CD48-201ENST00000368045 SHEQ5VZ18 495 aa12.28□□□□□ -0.44
CD48-201ENST00000368045 CLEC9AQ6UXN8 241 aa12.28□□□□□ -0.44
CD48-201ENST00000368045 SELENOHQ8IZQ5 122 aaKnown RBP12.28□□□□□ -0.44
CD48-201ENST00000368045 OR2M7Q8NG81 312 aa12.28□□□□□ -0.44
CD48-201ENST00000368045 OR5A2Q8NGI9 324 aa12.28□□□□□ -0.44
CD48-201ENST00000368045 SLAMF9Q96A28 289 aa12.28□□□□□ -0.44
CD48-201ENST00000368045 USB1Q9BQ65 265 aaKnown RBP12.28□□□□□ -0.44
CD48-201ENST00000368045 STRADBQ9C0K7 418 aa12.28□□□□□ -0.44
CD48-201ENST00000368045 EIF5A2Q9GZV4 153 aaKnown RBP12.28□□□□□ -0.44
CD48-201ENST00000368045 ZNF703Q9H7S9 590 aaPredicted RBP12.28□□□□□ -0.44
CD48-201ENST00000368045 LRFN1Q9P244 771 aa12.28□□□□□ -0.44
CD48-201ENST00000368045 BTBD17A6NE02 478 aa12.27□□□□□ -0.45
CD48-201ENST00000368045 ZNF724A8MTY0 619 aa12.27□□□□□ -0.45
CD48-201ENST00000368045 TRAPPC2LH3BP13 241 aa12.27□□□□□ -0.45
CD48-201ENST00000368045 MT-ND4LP03901 98 aa12.27□□□□□ -0.45
CD48-201ENST00000368045 UCP1P25874 307 aa12.27□□□□□ -0.45
CD48-201ENST00000368045 AKR1D1P51857 326 aa12.27□□□□□ -0.45
CD48-201ENST00000368045 BAXQ07812 192 aa12.27□□□□□ -0.45
CD48-201ENST00000368045 RHEBQ15382 184 aa12.27□□□□□ -0.45
CD48-201ENST00000368045 TIPARPQ7Z3E1 657 aaKnown RBP12.27□□□□□ -0.45
CD48-201ENST00000368045 SLC39A7Q92504 469 aa12.27□□□□□ -0.45
CD48-201ENST00000368045 HIST1H2AAQ96QV6 131 aa12.27□□□□□ -0.45
CD48-201ENST00000368045 TAAR9Q96RI9 348 aa12.27□□□□□ -0.45
CD48-201ENST00000368045 DDA1Q9BW61 102 aa12.27□□□□□ -0.45
CD48-201ENST00000368045 SLC35B3Q9H1N7 401 aa12.27□□□□□ -0.45
CD48-201ENST00000368045 LYRM2Q9NU23 88 aaPredicted RBP12.27□□□□□ -0.45
CD48-201ENST00000368045 COA4Q9NYJ1 87 aa12.27□□□□□ -0.45
CD48-201ENST00000368045 LAMA1P25391 3075 aa12.27□□□□□ -0.45
CD48-201ENST00000368045 EYSQ5T1H1 3165 aa12.27□□□□□ -0.45
CD48-201ENST00000368045 HSPA12AO43301 675 aa12.26□□□□□ -0.45
CD48-201ENST00000368045 GLI4P10075 376 aa12.26□□□□□ -0.45
CD48-201ENST00000368045 PTAFRP25105 342 aa12.26□□□□□ -0.45
CD48-201ENST00000368045 HAAOP46952 286 aa12.26□□□□□ -0.45
CD48-201ENST00000368045 SPIN3Q5JUX0 258 aa12.26□□□□□ -0.45
CD48-201ENST00000368045 HSD17B11Q8NBQ5 300 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms