RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 ECI1P42126 302 aa11.3□□□□□ -0.6
SQSTM1-201ENST00000360718 ALDH3B1P43353 468 aa11.3□□□□□ -0.6
SQSTM1-201ENST00000360718 ZNF92Q03936 586 aa11.3□□□□□ -0.6
SQSTM1-201ENST00000360718 SURF2Q15527 256 aaPredicted RBP11.3□□□□□ -0.6
SQSTM1-201ENST00000360718 SLC9A3R2Q15599 337 aa11.3□□□□□ -0.6
SQSTM1-201ENST00000360718 NKAPLQ5M9Q1 402 aa11.3□□□□□ -0.6
SQSTM1-201ENST00000360718 MRPL21Q7Z2W9 205 aaKnown RBP11.3□□□□□ -0.6
SQSTM1-201ENST00000360718 ST6GALNAC3Q8NDV1 305 aa11.3□□□□□ -0.6
SQSTM1-201ENST00000360718 EMG1Q92979 244 aaKnown RBP11.3□□□□□ -0.6
SQSTM1-201ENST00000360718 SPSB4Q96A44 273 aa11.3□□□□□ -0.6
SQSTM1-201ENST00000360718 C2orf50Q96LR7 162 aa11.3□□□□□ -0.6
SQSTM1-201ENST00000360718 ST6GALNAC5Q9BVH7 336 aa11.3□□□□□ -0.6
SQSTM1-201ENST00000360718 CHST5Q9GZS9 411 aa11.3□□□□□ -0.6
SQSTM1-201ENST00000360718 OPA3Q9H6K4 179 aa11.3□□□□□ -0.6
SQSTM1-201ENST00000360718 DNAJB11Q9UBS4 358 aa11.3□□□□□ -0.6
SQSTM1-201ENST00000360718 ADGRG4Q8IZF6 3080 aa11.29□□□□□ -0.6
SQSTM1-201ENST00000360718 OR5H1A6NKK0 313 aa11.29□□□□□ -0.6
SQSTM1-201ENST00000360718 SERPINE3A8MV23 424 aa11.29□□□□□ -0.6
SQSTM1-201ENST00000360718 CA11O75493 328 aa11.29□□□□□ -0.6
SQSTM1-201ENST00000360718 PRKACAP17612 351 aa11.29□□□□□ -0.6
SQSTM1-201ENST00000360718 PTGFRP43088 359 aa11.29□□□□□ -0.6
SQSTM1-201ENST00000360718 FAM3AP98173 230 aa11.29□□□□□ -0.6
SQSTM1-201ENST00000360718 KISS1Q15726 138 aa11.29□□□□□ -0.6
SQSTM1-201ENST00000360718 EIF5AL1Q6IS14 154 aaKnown RBP11.29□□□□□ -0.6
SQSTM1-201ENST00000360718 RNF144BQ7Z419 303 aa11.29□□□□□ -0.6
SQSTM1-201ENST00000360718 MRGPRGQ86SM5 289 aa11.29□□□□□ -0.6
SQSTM1-201ENST00000360718 LHFPL1Q86WI0 220 aa11.29□□□□□ -0.6
SQSTM1-201ENST00000360718 WDR31Q8NA23 367 aa11.29□□□□□ -0.6
SQSTM1-201ENST00000360718 CSNK2A3Q8NEV1 391 aa11.29□□□□□ -0.6
SQSTM1-201ENST00000360718 SSC4DQ8WTU2 575 aa11.29□□□□□ -0.6
SQSTM1-201ENST00000360718 RND1Q92730 232 aa11.29□□□□□ -0.6
SQSTM1-201ENST00000360718 TMEM230Q96A57 120 aa11.29□□□□□ -0.6
SQSTM1-201ENST00000360718 VKORC1Q9BQB6 163 aa11.29□□□□□ -0.6
SQSTM1-201ENST00000360718 CFAP46Q8IYW2 2715 aa11.29□□□□□ -0.6
SQSTM1-201ENST00000360718 CACNA1BQ00975 2339 aa11.29□□□□□ -0.6
SQSTM1-201ENST00000360718 TRGV8A0A0C4DH27 118 aa11.29□□□□□ -0.6
SQSTM1-201ENST00000360718 hCG_38984A0A1B0GV85 526 aa11.29□□□□□ -0.6
SQSTM1-201ENST00000360718 A8MXE2 369 aa11.29□□□□□ -0.6
SQSTM1-201ENST00000360718 J3QW42 95 aa11.29□□□□□ -0.6
SQSTM1-201ENST00000360718 SNU13P55769 128 aaKnown RBP11.29□□□□□ -0.6
SQSTM1-201ENST00000360718 CTAG1AP78358 180 aa11.29□□□□□ -0.6
SQSTM1-201ENST00000360718 AQP10Q96PS8 301 aa11.29□□□□□ -0.6
SQSTM1-201ENST00000360718 RTBDNQ9BSG5 229 aaPredicted RBP11.29□□□□□ -0.6
SQSTM1-201ENST00000360718 PURGQ9UJV8 347 aaKnown RBP11.29□□□□□ -0.6
SQSTM1-201ENST00000360718 TAAR5O14804 337 aa11.28□□□□□ -0.6
SQSTM1-201ENST00000360718 AGFG2O95081 481 aa11.28□□□□□ -0.6
SQSTM1-201ENST00000360718 NAT2P11245 290 aa11.28□□□□□ -0.6
SQSTM1-201ENST00000360718 BLVRBP30043 206 aaPredicted RBP11.28□□□□□ -0.6
SQSTM1-201ENST00000360718 CNN3Q15417 329 aaKnown RBP11.28□□□□□ -0.6
SQSTM1-201ENST00000360718 OR8B8Q15620 311 aa11.28□□□□□ -0.6
SQSTM1-201ENST00000360718 CHRFAM7AQ494W8 412 aa11.28□□□□□ -0.6
SQSTM1-201ENST00000360718 TIMM23BQ5SRD1 257 aa11.28□□□□□ -0.6
SQSTM1-201ENST00000360718 ZSCAN4Q8NAM6 433 aaPredicted RBP11.28□□□□□ -0.6
SQSTM1-201ENST00000360718 OR13G1Q8NGZ3 307 aa11.28□□□□□ -0.6
SQSTM1-201ENST00000360718 MUCL1Q96DR8 90 aa11.28□□□□□ -0.6
SQSTM1-201ENST00000360718 CNTNAP3BQ96NU0 1288 aa11.28□□□□□ -0.6
SQSTM1-201ENST00000360718 CYTL1Q9NRR1 136 aa11.28□□□□□ -0.6
SQSTM1-201ENST00000360718 EHFQ9NZC4 300 aa11.28□□□□□ -0.6
SQSTM1-201ENST00000360718 C14orf166Q9Y224 244 aaKnown RBP11.28□□□□□ -0.6
SQSTM1-201ENST00000360718 OSGIN2Q9Y236 505 aa11.28□□□□□ -0.6
SQSTM1-201ENST00000360718 STARD10Q9Y365 291 aa11.28□□□□□ -0.6
SQSTM1-201ENST00000360718 IGKV1-9A0A0C4DH69 117 aa11.28□□□□□ -0.6
SQSTM1-201ENST00000360718 A0A1W2PP11 408 aa11.28□□□□□ -0.6
SQSTM1-201ENST00000360718 IGKV3-15P01624 115 aa11.28□□□□□ -0.6
SQSTM1-201ENST00000360718 CPT2P23786 658 aa11.28□□□□□ -0.6
SQSTM1-201ENST00000360718 ACKR3P25106 362 aa11.28□□□□□ -0.6
SQSTM1-201ENST00000360718 FLI1Q01543 452 aaPredicted RBP11.28□□□□□ -0.6
SQSTM1-201ENST00000360718 DMRTC1Q5HYR2 192 aa11.28□□□□□ -0.6
SQSTM1-201ENST00000360718 IL34Q6ZMJ4 242 aa11.28□□□□□ -0.6
SQSTM1-201ENST00000360718 RTN4RL2Q86UN3 420 aa11.28□□□□□ -0.6
SQSTM1-201ENST00000360718 BOLLQ8N9W6 283 aaKnown RBP11.28□□□□□ -0.6
SQSTM1-201ENST00000360718 CPNE2Q96FN4 548 aaPredicted RBP11.28□□□□□ -0.6
SQSTM1-201ENST00000360718 REPIN1Q9BWE0 567 aaKnown RBP11.28□□□□□ -0.6
SQSTM1-201ENST00000360718 MMP26Q9NRE1 261 aa11.28□□□□□ -0.6
SQSTM1-201ENST00000360718 ZNF816-ZNF321PA0A0X1KG74 233 aa11.27□□□□□ -0.61
SQSTM1-201ENST00000360718 H0YIZ8 118 aa11.27□□□□□ -0.61
SQSTM1-201ENST00000360718 ADAP1O75689 374 aa11.27□□□□□ -0.61
SQSTM1-201ENST00000360718 NGFP01138 241 aa11.27□□□□□ -0.61
SQSTM1-201ENST00000360718 SPAG16Q8N0X2 631 aa11.27□□□□□ -0.61
SQSTM1-201ENST00000360718 S100PBPQ96BU1 408 aa11.27□□□□□ -0.61
SQSTM1-201ENST00000360718 SAT2Q96F10 170 aaPredicted RBP11.27□□□□□ -0.61
SQSTM1-201ENST00000360718 TECTBQ96PL2 329 aa11.27□□□□□ -0.61
SQSTM1-201ENST00000360718 USB1Q9BQ65 265 aaKnown RBP11.27□□□□□ -0.61
SQSTM1-201ENST00000360718 TM2D1Q9BX74 207 aa11.27□□□□□ -0.61
SQSTM1-201ENST00000360718 PECRQ9BY49 303 aa11.27□□□□□ -0.61
SQSTM1-201ENST00000360718 OR51B6Q9H340 312 aa11.27□□□□□ -0.61
SQSTM1-201ENST00000360718 ELOVL5Q9NYP7 299 aa11.27□□□□□ -0.61
SQSTM1-201ENST00000360718 FBXO9Q9UK97 447 aaPredicted RBP11.27□□□□□ -0.61
SQSTM1-201ENST00000360718 FAM74A7A6NL05 159 aa11.26□□□□□ -0.61
SQSTM1-201ENST00000360718 F8W036 122 aa11.26□□□□□ -0.61
SQSTM1-201ENST00000360718 H7C2Y5 167 aa11.26□□□□□ -0.61
SQSTM1-201ENST00000360718 KCNAB3O43448 404 aa11.26□□□□□ -0.61
SQSTM1-201ENST00000360718 NRASP01111 189 aa11.26□□□□□ -0.61
SQSTM1-201ENST00000360718 CSTBP04080 98 aaKnown RBP11.26□□□□□ -0.61
SQSTM1-201ENST00000360718 WNT5AP41221 380 aa11.26□□□□□ -0.61
SQSTM1-201ENST00000360718 ARHGDIBP52566 201 aa11.26□□□□□ -0.61
SQSTM1-201ENST00000360718 SUPT4H1P63272 117 aaKnown RBP11.26□□□□□ -0.61
SQSTM1-201ENST00000360718 BLOC1S1P78537 153 aa11.26□□□□□ -0.61
SQSTM1-201ENST00000360718 ESPL1Q14674 2120 aa11.26□□□□□ -0.61
SQSTM1-201ENST00000360718 UBE2V2Q15819 145 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms