RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 TMEM218A2RU14 115 aa17.84■□□□□ 0.45
CCDC88B-203ENST00000359902 ARGFXA6NJG6 315 aa17.84■□□□□ 0.45
CCDC88B-203ENST00000359902 TRAPPC2LH3BP13 241 aa17.84■□□□□ 0.45
CCDC88B-203ENST00000359902 SYNGR1O43759 233 aa17.84■□□□□ 0.45
CCDC88B-203ENST00000359902 LILRA1O75019 489 aa17.84■□□□□ 0.45
CCDC88B-203ENST00000359902 AKR1C2P52895 323 aa17.84■□□□□ 0.45
CCDC88B-203ENST00000359902 AKR1C1Q04828 323 aa17.84■□□□□ 0.45
CCDC88B-203ENST00000359902 LGI3Q8N145 548 aa17.84■□□□□ 0.45
CCDC88B-203ENST00000359902 OR1K1Q8NGR3 316 aa17.84■□□□□ 0.45
CCDC88B-203ENST00000359902 OR5P3Q8WZ94 311 aa17.84■□□□□ 0.45
CCDC88B-203ENST00000359902 BCL2L2Q92843 193 aaPredicted RBP17.84■□□□□ 0.45
CCDC88B-203ENST00000359902 FAM86C1Q9NVL1 165 aa17.84■□□□□ 0.45
CCDC88B-203ENST00000359902 NUPL2O15504 423 aaKnown RBP17.84■□□□□ 0.45
CCDC88B-203ENST00000359902 APLNRP35414 380 aa17.84■□□□□ 0.45
CCDC88B-203ENST00000359902 TMEM33P57088 247 aa17.84■□□□□ 0.45
CCDC88B-203ENST00000359902 CCDC71LQ8N9Z2 235 aa17.84■□□□□ 0.45
CCDC88B-203ENST00000359902 FBXL17Q9UF56 701 aa17.84■□□□□ 0.45
CCDC88B-203ENST00000359902 PCNX2A6NKB5 2137 aa17.83■□□□□ 0.45
CCDC88B-203ENST00000359902 PHF1O43189 567 aaPredicted RBP17.83■□□□□ 0.45
CCDC88B-203ENST00000359902 CLN3Q13286 438 aa17.83■□□□□ 0.45
CCDC88B-203ENST00000359902 MPV17LQ2QL34 196 aa17.83■□□□□ 0.45
CCDC88B-203ENST00000359902 TMEM268Q5VZI3 342 aa17.83■□□□□ 0.45
CCDC88B-203ENST00000359902 FBXW9Q5XUX1 488 aa17.83■□□□□ 0.45
CCDC88B-203ENST00000359902 TP53RKQ96S44 253 aa17.83■□□□□ 0.45
CCDC88B-203ENST00000359902 PLEKHA2Q9HB19 425 aa17.83■□□□□ 0.45
CCDC88B-203ENST00000359902 MMP26Q9NRE1 261 aa17.83■□□□□ 0.45
CCDC88B-203ENST00000359902 TRGV5A0A0B4J1U4 118 aa17.83■□□□□ 0.44
CCDC88B-203ENST00000359902 NUDT19A8MXV4 375 aa17.83■□□□□ 0.44
CCDC88B-203ENST00000359902 ABCD4O14678 606 aa17.83■□□□□ 0.44
CCDC88B-203ENST00000359902 GNRHRP30968 328 aa17.83■□□□□ 0.44
CCDC88B-203ENST00000359902 ARG2P78540 354 aa17.83■□□□□ 0.44
CCDC88B-203ENST00000359902 SRSF3P84103 164 aaKnown RBP17.83■□□□□ 0.44
CCDC88B-203ENST00000359902 ZNF766Q5HY98 468 aa17.83■□□□□ 0.44
CCDC88B-203ENST00000359902 EIF5AL1Q6IS14 154 aaKnown RBP17.83■□□□□ 0.44
CCDC88B-203ENST00000359902 OR4A4PQ8NGN8 299 aa17.83■□□□□ 0.44
CCDC88B-203ENST00000359902 SAT2Q96F10 170 aaPredicted RBP17.83■□□□□ 0.44
CCDC88B-203ENST00000359902 SMIM8Q96KF7 97 aa17.83■□□□□ 0.44
CCDC88B-203ENST00000359902 DOCK7Q96N67 2140 aa17.83■□□□□ 0.44
CCDC88B-203ENST00000359902 E5RGE8 158 aa17.82■□□□□ 0.44
CCDC88B-203ENST00000359902 ATP6V1G2-DDX39BF2Z307 99 aa17.82■□□□□ 0.44
CCDC88B-203ENST00000359902 MPPED1O15442 326 aa17.82■□□□□ 0.44
CCDC88B-203ENST00000359902 DIRAS3O95661 229 aa17.82■□□□□ 0.44
CCDC88B-203ENST00000359902 GAPDHP04406 335 aaKnown RBP17.82■□□□□ 0.44
CCDC88B-203ENST00000359902 SCTP09683 121 aa17.82■□□□□ 0.44
CCDC88B-203ENST00000359902 DUSP1P28562 367 aa17.82■□□□□ 0.44
CCDC88B-203ENST00000359902 HAGHLQ6PII5 290 aaPredicted RBP17.82■□□□□ 0.44
CCDC88B-203ENST00000359902 DPPA2Q7Z7J5 298 aa17.82■□□□□ 0.44
CCDC88B-203ENST00000359902 OR52M1Q8NGK5 317 aa17.82■□□□□ 0.44
CCDC88B-203ENST00000359902 NSG2Q9Y328 171 aa17.82■□□□□ 0.44
CCDC88B-203ENST00000359902 SLC22A20A6NK97 555 aa17.82■□□□□ 0.44
CCDC88B-203ENST00000359902 ANKRD30BLA7E2S9 258 aa17.82■□□□□ 0.44
CCDC88B-203ENST00000359902 JTBO76095 146 aa17.82■□□□□ 0.44
CCDC88B-203ENST00000359902 KCNJ3P48549 501 aa17.82■□□□□ 0.44
CCDC88B-203ENST00000359902 TSC22D1Q15714 1073 aa17.82■□□□□ 0.44
CCDC88B-203ENST00000359902 LDLRAD3Q86YD5 345 aa17.82■□□□□ 0.44
CCDC88B-203ENST00000359902 OR51B6Q9H340 312 aa17.82■□□□□ 0.44
CCDC88B-203ENST00000359902 C3orf85A0A1B0GTC6 90 aa17.81■□□□□ 0.44
CCDC88B-203ENST00000359902 DNASE2O00115 360 aaPredicted RBP17.81■□□□□ 0.44
CCDC88B-203ENST00000359902 HSPB6O14558 160 aa17.81■□□□□ 0.44
CCDC88B-203ENST00000359902 ATG12O94817 140 aa17.81■□□□□ 0.44
CCDC88B-203ENST00000359902 NOVA1P51513 510 aaKnown RBP17.81■□□□□ 0.44
CCDC88B-203ENST00000359902 TRIP6Q15654 476 aaKnown RBP17.81■□□□□ 0.44
CCDC88B-203ENST00000359902 MDP1Q86V88 176 aa17.81■□□□□ 0.44
CCDC88B-203ENST00000359902 ERGIC1Q969X5 290 aa17.81■□□□□ 0.44
CCDC88B-203ENST00000359902 SMIM3Q9BZL3 60 aa17.81■□□□□ 0.44
CCDC88B-203ENST00000359902 PLA2G2EQ9NZK7 142 aa17.81■□□□□ 0.44
CCDC88B-203ENST00000359902 FBXO9Q9UK97 447 aaPredicted RBP17.81■□□□□ 0.44
CCDC88B-203ENST00000359902 MPC1Q9Y5U8 109 aa17.81■□□□□ 0.44
CCDC88B-203ENST00000359902 TK1P04183 234 aa17.81■□□□□ 0.44
CCDC88B-203ENST00000359902 PRKACAP17612 351 aa17.81■□□□□ 0.44
CCDC88B-203ENST00000359902 SPINK2P20155 84 aa17.81■□□□□ 0.44
CCDC88B-203ENST00000359902 HERPUD1Q15011 391 aa17.81■□□□□ 0.44
CCDC88B-203ENST00000359902 IL34Q6ZMJ4 242 aa17.81■□□□□ 0.44
CCDC88B-203ENST00000359902 TMPRSS7Q7RTY8 843 aa17.81■□□□□ 0.44
CCDC88B-203ENST00000359902 ZNF488Q96MN9 340 aa17.81■□□□□ 0.44
CCDC88B-203ENST00000359902 ZDHHC11Q9H8X9 412 aa17.81■□□□□ 0.44
CCDC88B-203ENST00000359902 TMED3Q9Y3Q3 217 aa17.81■□□□□ 0.44
CCDC88B-203ENST00000359902 FAM186AA6NE01 2351 aa17.81■□□□□ 0.44
CCDC88B-203ENST00000359902 ADCYAP1P18509 176 aa17.8■□□□□ 0.44
CCDC88B-203ENST00000359902 PJVKQ0ZLH3 352 aa17.8■□□□□ 0.44
CCDC88B-203ENST00000359902 FAM185AQ8N0U4 392 aa17.8■□□□□ 0.44
CCDC88B-203ENST00000359902 SLC35G3Q8N808 338 aa17.8■□□□□ 0.44
CCDC88B-203ENST00000359902 NEK7Q8TDX7 302 aa17.8■□□□□ 0.44
CCDC88B-203ENST00000359902 BSCL2Q96G97 398 aaPredicted RBP17.8■□□□□ 0.44
CCDC88B-203ENST00000359902 HRH4Q9H3N8 390 aa17.8■□□□□ 0.44
CCDC88B-203ENST00000359902 LHX6Q9UPM6 363 aa17.8■□□□□ 0.44
CCDC88B-203ENST00000359902 FBXO24O75426 580 aa17.8■□□□□ 0.44
CCDC88B-203ENST00000359902 LPAR6P43657 344 aa17.8■□□□□ 0.44
CCDC88B-203ENST00000359902 SULT1A2P50226 295 aa17.8■□□□□ 0.44
CCDC88B-203ENST00000359902 GNG3P63215 75 aa17.8■□□□□ 0.44
CCDC88B-203ENST00000359902 OR2T2Q6IF00 324 aa17.8■□□□□ 0.44
CCDC88B-203ENST00000359902 CLEC9AQ6UXN8 241 aa17.8■□□□□ 0.44
CCDC88B-203ENST00000359902 MEX3BQ6ZN04 569 aaKnown RBP17.8■□□□□ 0.44
CCDC88B-203ENST00000359902 ZNF573Q86YE8 665 aa17.8■□□□□ 0.44
CCDC88B-203ENST00000359902 NKX6-2Q9C056 277 aaPredicted RBP17.8■□□□□ 0.44
CCDC88B-203ENST00000359902 PLK3Q9H4B4 646 aa17.8■□□□□ 0.44
CCDC88B-203ENST00000359902 GP6Q9HCN6 339 aa17.8■□□□□ 0.44
CCDC88B-203ENST00000359902 OR5B21A6NL26 309 aa17.79■□□□□ 0.44
CCDC88B-203ENST00000359902 TRDCB7Z8K6 153 aa17.79■□□□□ 0.44
CCDC88B-203ENST00000359902 FBXW12Q6X9E4 464 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms