RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 NDNFQ8TB73 568 aa18.31■□□□□ 0.52
SHMT1-203ENST00000354098 NUDT16L1Q9BRJ7 211 aaKnown RBP18.31■□□□□ 0.52
SHMT1-203ENST00000354098 IFT22Q9H7X7 185 aa18.31■□□□□ 0.52
SHMT1-203ENST00000354098 DOCK11Q5JSL3 2073 aa18.31■□□□□ 0.52
SHMT1-203ENST00000354098 ECDO95905 644 aaPredicted RBP18.31■□□□□ 0.52
SHMT1-203ENST00000354098 EFNB2P52799 333 aa18.31■□□□□ 0.52
SHMT1-203ENST00000354098 EDDM3AQ14507 147 aa18.31■□□□□ 0.52
SHMT1-203ENST00000354098 ATAD3CQ5T2N8 411 aa18.31■□□□□ 0.52
SHMT1-203ENST00000354098 DCAF12L2Q5VW00 463 aa18.31■□□□□ 0.52
SHMT1-203ENST00000354098 SIGIRRQ6IA17 410 aa18.31■□□□□ 0.52
SHMT1-203ENST00000354098 FAHD2BQ6P2I3 314 aaPredicted RBP18.31■□□□□ 0.52
SHMT1-203ENST00000354098 LINC00596Q86U02 117 aa18.31■□□□□ 0.52
SHMT1-203ENST00000354098 TPRX1Q8N7U7 411 aa18.31■□□□□ 0.52
SHMT1-203ENST00000354098 SUMF2Q8NBJ7 301 aa18.31■□□□□ 0.52
SHMT1-203ENST00000354098 FAHD2AQ96GK7 314 aa18.31■□□□□ 0.52
SHMT1-203ENST00000354098 LPAR5Q9H1C0 372 aa18.31■□□□□ 0.52
SHMT1-203ENST00000354098 C19orf12Q9NSK7 152 aa18.31■□□□□ 0.52
SHMT1-203ENST00000354098 FBLN5Q9UBX5 448 aa18.31■□□□□ 0.52
SHMT1-203ENST00000354098 INSIG2Q9Y5U4 225 aa18.31■□□□□ 0.52
SHMT1-203ENST00000354098 A0A0A6YYD4 124 aa18.3■□□□□ 0.52
SHMT1-203ENST00000354098 PPIAL4CA0A0B4J2A2 164 aa18.3■□□□□ 0.52
SHMT1-203ENST00000354098 KIR2DS1A0A191URI9 304 aa18.3■□□□□ 0.52
SHMT1-203ENST00000354098 PAHP00439 452 aa18.3■□□□□ 0.52
SHMT1-203ENST00000354098 SNRPBP14678 240 aaKnown RBP18.3■□□□□ 0.52
SHMT1-203ENST00000354098 PAN3Q58A45 887 aaKnown RBP18.3■□□□□ 0.52
SHMT1-203ENST00000354098 GDPD3Q7L5L3 318 aa18.3■□□□□ 0.52
SHMT1-203ENST00000354098 OR5D13Q8NGL4 314 aa18.3■□□□□ 0.52
SHMT1-203ENST00000354098 TM2D1Q9BX74 207 aa18.3■□□□□ 0.52
SHMT1-203ENST00000354098 ING3Q9NXR8 418 aa18.3■□□□□ 0.52
SHMT1-203ENST00000354098 CEPT1Q9Y6K0 416 aa18.3■□□□□ 0.52
SHMT1-203ENST00000354098 MEX3AA1L020 520 aaKnown RBP18.29■□□□□ 0.52
SHMT1-203ENST00000354098 A8MV72 311 aaPredicted RBP18.29■□□□□ 0.52
SHMT1-203ENST00000354098 TMBIM6P55061 237 aa18.29■□□□□ 0.52
SHMT1-203ENST00000354098 EDDM3BP56851 147 aa18.29■□□□□ 0.52
SHMT1-203ENST00000354098 ATXN7L3Q14CW9 347 aaPredicted RBP18.29■□□□□ 0.52
SHMT1-203ENST00000354098 LY6G5BQ8NDX9 201 aa18.29■□□□□ 0.52
SHMT1-203ENST00000354098 SLC25A46Q96AG3 418 aa18.29■□□□□ 0.52
SHMT1-203ENST00000354098 DPCDQ9BVM2 203 aaPredicted RBP18.29■□□□□ 0.52
SHMT1-203ENST00000354098 BARHL1Q9BZE3 327 aa18.29■□□□□ 0.52
SHMT1-203ENST00000354098 KCNS2Q9ULS6 477 aa18.29■□□□□ 0.52
SHMT1-203ENST00000354098 A0A0G2JMP0 313 aa18.28■□□□□ 0.52
SHMT1-203ENST00000354098 A0A0X1KG70 313 aa18.28■□□□□ 0.52
SHMT1-203ENST00000354098 MGST3O14880 152 aa18.28■□□□□ 0.52
SHMT1-203ENST00000354098 ENSAO43768 121 aaKnown RBP18.28■□□□□ 0.52
SHMT1-203ENST00000354098 PPIAL4GP0DN37 164 aa18.28■□□□□ 0.52
SHMT1-203ENST00000354098 AESQ08117 197 aa18.28■□□□□ 0.52
SHMT1-203ENST00000354098 SPCS2Q15005 226 aa18.28■□□□□ 0.52
SHMT1-203ENST00000354098 C11orf91Q3C1V1 193 aa18.28■□□□□ 0.52
SHMT1-203ENST00000354098 OR4M2Q8NGB6 313 aa18.28■□□□□ 0.52
SHMT1-203ENST00000354098 C8orf46Q8TAG6 207 aa18.28■□□□□ 0.52
SHMT1-203ENST00000354098 PPP1R35Q8TAP8 253 aa18.28■□□□□ 0.52
SHMT1-203ENST00000354098 RAB2BQ8WUD1 216 aa18.28■□□□□ 0.52
SHMT1-203ENST00000354098 TMPRSS13Q9BYE2 586 aa18.28■□□□□ 0.52
SHMT1-203ENST00000354098 DCSTAMPQ9H295 470 aa18.28■□□□□ 0.52
SHMT1-203ENST00000354098 RCC2Q9P258 522 aaKnown RBP18.28■□□□□ 0.52
SHMT1-203ENST00000354098 FAM90A10PA6NDY2 464 aa18.28■□□□□ 0.52
SHMT1-203ENST00000354098 FAM90A18PA6NE21 464 aa18.28■□□□□ 0.52
SHMT1-203ENST00000354098 FAM90A16PA6NEW6 464 aa18.28■□□□□ 0.52
SHMT1-203ENST00000354098 FAM90A20PA6NIJ5 464 aa18.28■□□□□ 0.52
SHMT1-203ENST00000354098 FAM90A8PA6NJQ4 464 aa18.28■□□□□ 0.52
SHMT1-203ENST00000354098 FAM90A7PA6NKC0 464 aa18.28■□□□□ 0.52
SHMT1-203ENST00000354098 FAM90A22PA8MWA6 464 aa18.28■□□□□ 0.52
SHMT1-203ENST00000354098 FAM90A12PA8MX19 464 aa18.28■□□□□ 0.52
SHMT1-203ENST00000354098 FAM90A5PA8MXJ8 464 aa18.28■□□□□ 0.52
SHMT1-203ENST00000354098 FAM90A23PA8MXZ1 464 aa18.28■□□□□ 0.52
SHMT1-203ENST00000354098 AVPP01185 164 aa18.28■□□□□ 0.52
SHMT1-203ENST00000354098 FAM90A15PP0C7V4 464 aa18.28■□□□□ 0.52
SHMT1-203ENST00000354098 FAM90A13PP0C7W8 464 aa18.28■□□□□ 0.52
SHMT1-203ENST00000354098 FAM90A14PP0C7W9 464 aa18.28■□□□□ 0.52
SHMT1-203ENST00000354098 FAM90A24PP0C7X0 464 aa18.28■□□□□ 0.52
SHMT1-203ENST00000354098 RANBP1P43487 201 aa18.28■□□□□ 0.52
SHMT1-203ENST00000354098 RPL31P62899 125 aaKnown RBP18.28■□□□□ 0.52
SHMT1-203ENST00000354098 RAB12Q6IQ22 244 aa18.28■□□□□ 0.52
SHMT1-203ENST00000354098 BTNL3Q6UXE8 466 aa18.28■□□□□ 0.52
SHMT1-203ENST00000354098 USP43Q70EL4 1123 aa18.28■□□□□ 0.52
SHMT1-203ENST00000354098 RTN4RL2Q86UN3 420 aa18.28■□□□□ 0.52
SHMT1-203ENST00000354098 FAM185AQ8N0U4 392 aa18.28■□□□□ 0.52
SHMT1-203ENST00000354098 LGALS14Q8TCE9 139 aa18.28■□□□□ 0.52
SHMT1-203ENST00000354098 ISOC1Q96CN7 298 aa18.28■□□□□ 0.52
SHMT1-203ENST00000354098 COQ2Q96H96 371 aa18.28■□□□□ 0.52
SHMT1-203ENST00000354098 URM1Q9BTM9 101 aaKnown RBP18.28■□□□□ 0.52
SHMT1-203ENST00000354098 RAB22AQ9UL26 194 aa18.28■□□□□ 0.52
SHMT1-203ENST00000354098 PEX16Q9Y5Y5 336 aa18.28■□□□□ 0.52
SHMT1-203ENST00000354098 SOCS1O15524 211 aa18.27■□□□□ 0.52
SHMT1-203ENST00000354098 GLIPR1P48060 266 aa18.27■□□□□ 0.52
SHMT1-203ENST00000354098 PAX8Q06710 450 aa18.27■□□□□ 0.52
SHMT1-203ENST00000354098 BLMHQ13867 455 aa18.27■□□□□ 0.52
SHMT1-203ENST00000354098 CR1LQ2VPA4 569 aa18.27■□□□□ 0.52
SHMT1-203ENST00000354098 TMEM200BQ69YZ2 307 aa18.27■□□□□ 0.52
SHMT1-203ENST00000354098 FAM89BQ8N5H3 189 aa18.27■□□□□ 0.52
SHMT1-203ENST00000354098 OR5H6Q8NGV6 325 aa18.27■□□□□ 0.52
SHMT1-203ENST00000354098 PLPPR1Q8TBJ4 325 aa18.27■□□□□ 0.52
SHMT1-203ENST00000354098 C7orf69Q9H7B7 122 aa18.27■□□□□ 0.52
SHMT1-203ENST00000354098 TEP1Q99973 2627 aaKnown RBP18.26■□□□□ 0.51
SHMT1-203ENST00000354098 TRBV23-1A0A0A0MS06 115 aa18.26■□□□□ 0.51
SHMT1-203ENST00000354098 A0A1W2PQ09 198 aa18.26■□□□□ 0.51
SHMT1-203ENST00000354098 CSN2P05814 226 aa18.26■□□□□ 0.51
SHMT1-203ENST00000354098 FUT3P21217 361 aa18.26■□□□□ 0.51
SHMT1-203ENST00000354098 GATA3P23771 443 aa18.26■□□□□ 0.51
SHMT1-203ENST00000354098 VEGFCP49767 419 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms