RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 OR4F4Q96R69 305 aa12.99□□□□□ -0.33
COL17A1-201ENST00000353479 CHCHD2Q9Y6H1 151 aaPredicted RBP12.99□□□□□ -0.33
COL17A1-201ENST00000353479 ANK1P16157 1881 aa12.99□□□□□ -0.33
COL17A1-201ENST00000353479 CD80P33681 288 aa12.99□□□□□ -0.33
COL17A1-201ENST00000353479 PIGMQ9H3S5 423 aa12.99□□□□□ -0.33
COL17A1-201ENST00000353479 FAM157AC9JC47 383 aa12.99□□□□□ -0.33
COL17A1-201ENST00000353479 MBP02144 154 aa12.99□□□□□ -0.33
COL17A1-201ENST00000353479 MPV17LQ2QL34 196 aa12.99□□□□□ -0.33
COL17A1-201ENST00000353479 ZBTB44Q8NCP5 570 aa12.99□□□□□ -0.33
COL17A1-201ENST00000353479 TMEM104Q8NE00 496 aa12.99□□□□□ -0.33
COL17A1-201ENST00000353479 OR1K1Q8NGR3 316 aa12.99□□□□□ -0.33
COL17A1-201ENST00000353479 HES4Q9HCC6 221 aa12.99□□□□□ -0.33
COL17A1-201ENST00000353479 RAB18Q9NP72 206 aa12.99□□□□□ -0.33
COL17A1-201ENST00000353479 MTCL1Q9Y4B5 1905 aaKnown RBP12.99□□□□□ -0.33
COL17A1-201ENST00000353479 ZNF787Q6DD87 383 aa12.99□□□□□ -0.33
COL17A1-201ENST00000353479 DVL1O14640 695 aa12.98□□□□□ -0.33
COL17A1-201ENST00000353479 RBP4P02753 201 aa12.98□□□□□ -0.33
COL17A1-201ENST00000353479 HOXD11P31277 338 aaPredicted RBP12.98□□□□□ -0.33
COL17A1-201ENST00000353479 KIR2DS2P43631 304 aa12.98□□□□□ -0.33
COL17A1-201ENST00000353479 GZMKP49863 264 aa12.98□□□□□ -0.33
COL17A1-201ENST00000353479 EFNB2P52799 333 aa12.98□□□□□ -0.33
COL17A1-201ENST00000353479 DVL1P1P54792 670 aaPredicted RBP12.98□□□□□ -0.33
COL17A1-201ENST00000353479 GGNBP1Q5YKI7 109 aa12.98□□□□□ -0.33
COL17A1-201ENST00000353479 SAMD10Q9BYL1 202 aa12.98□□□□□ -0.33
COL17A1-201ENST00000353479 MIXL1Q9H2W2 232 aa12.98□□□□□ -0.33
COL17A1-201ENST00000353479 TPRP12270 2363 aaKnown RBP12.98□□□□□ -0.33
COL17A1-201ENST00000353479 A0A0U1RQV5 110 aa12.98□□□□□ -0.33
COL17A1-201ENST00000353479 SSX8Q7RTT4 187 aa12.98□□□□□ -0.33
COL17A1-201ENST00000353479 TIMP4Q99727 224 aa12.98□□□□□ -0.33
COL17A1-201ENST00000353479 LPAR2Q9HBW0 351 aa12.98□□□□□ -0.33
COL17A1-201ENST00000353479 RASL12Q9NYN1 266 aa12.98□□□□□ -0.33
COL17A1-201ENST00000353479 CELA3AP09093 270 aa12.98□□□□□ -0.33
COL17A1-201ENST00000353479 RAB4AP20338 218 aa12.98□□□□□ -0.33
COL17A1-201ENST00000353479 RPL35P42766 123 aaKnown RBP12.98□□□□□ -0.33
COL17A1-201ENST00000353479 TAGLNQ01995 201 aaKnown RBP12.98□□□□□ -0.33
COL17A1-201ENST00000353479 AESQ08117 197 aa12.98□□□□□ -0.33
COL17A1-201ENST00000353479 RPS4Y2Q8TD47 263 aa12.98□□□□□ -0.33
COL17A1-201ENST00000353479 DOCK6Q96HP0 2047 aa12.98□□□□□ -0.33
COL17A1-201ENST00000353479 SSX4O60224 188 aa12.98□□□□□ -0.33
COL17A1-201ENST00000353479 ADRA2AP08913 450 aa12.98□□□□□ -0.33
COL17A1-201ENST00000353479 OPRK1P41145 380 aa12.98□□□□□ -0.33
COL17A1-201ENST00000353479 Q56UQ5 140 aa12.98□□□□□ -0.33
COL17A1-201ENST00000353479 RPUSD3Q6P087 351 aaKnown RBP12.98□□□□□ -0.33
COL17A1-201ENST00000353479 BCL2L11O43521 198 aa12.97□□□□□ -0.33
COL17A1-201ENST00000353479 GZMHP20718 246 aa12.97□□□□□ -0.33
COL17A1-201ENST00000353479 TMEM231Q9H6L2 316 aa12.97□□□□□ -0.33
COL17A1-201ENST00000353479 MRPL22Q9NWU5 206 aaKnown RBP12.97□□□□□ -0.33
COL17A1-201ENST00000353479 LIPGQ9Y5X9 500 aa12.97□□□□□ -0.33
COL17A1-201ENST00000353479 EGR4Q05215 589 aa12.97□□□□□ -0.33
COL17A1-201ENST00000353479 GABRA6Q16445 453 aa12.97□□□□□ -0.33
COL17A1-201ENST00000353479 ASCL5Q7RTU5 278 aa12.97□□□□□ -0.33
COL17A1-201ENST00000353479 TBC1D26Q86UD7 250 aa12.97□□□□□ -0.33
COL17A1-201ENST00000353479 LRFN3Q9BTN0 628 aa12.97□□□□□ -0.33
COL17A1-201ENST00000353479 SCNM1Q9BWG6 230 aa12.97□□□□□ -0.33
COL17A1-201ENST00000353479 PRR13Q9NZ81 148 aa12.97□□□□□ -0.33
COL17A1-201ENST00000353479 CLN8Q9UBY8 286 aa12.97□□□□□ -0.33
COL17A1-201ENST00000353479 LHFPL6Q9Y693 200 aa12.97□□□□□ -0.33
COL17A1-201ENST00000353479 V9GYH0 126 aa12.97□□□□□ -0.33
COL17A1-201ENST00000353479 EP300Q09472 2414 aaPredicted RBP12.97□□□□□ -0.33
COL17A1-201ENST00000353479 CTDSPLO15194 276 aa12.97□□□□□ -0.33
COL17A1-201ENST00000353479 GSTZ1O43708 216 aaPredicted RBP12.97□□□□□ -0.33
COL17A1-201ENST00000353479 FGF2P09038 288 aa12.97□□□□□ -0.33
COL17A1-201ENST00000353479 HNF1AP20823 631 aa12.97□□□□□ -0.33
COL17A1-201ENST00000353479 F2RP25116 425 aa12.97□□□□□ -0.33
COL17A1-201ENST00000353479 ID4P47928 161 aa12.97□□□□□ -0.33
COL17A1-201ENST00000353479 ZNF519Q8TB69 540 aa12.97□□□□□ -0.33
COL17A1-201ENST00000353479 PPIAL4EA0A075B759 164 aa12.97□□□□□ -0.33
COL17A1-201ENST00000353479 ZNF705FA8MVS1 300 aaPredicted RBP12.97□□□□□ -0.33
COL17A1-201ENST00000353479 PPIAL4DF5H284 164 aa12.97□□□□□ -0.33
COL17A1-201ENST00000353479 M0QZ24 198 aa12.97□□□□□ -0.33
COL17A1-201ENST00000353479 TRAF3IP2O43734 574 aaPredicted RBP12.97□□□□□ -0.33
COL17A1-201ENST00000353479 ZNF705DP0CH99 300 aaPredicted RBP12.97□□□□□ -0.33
COL17A1-201ENST00000353479 ZNF705BP0CI00 300 aaPredicted RBP12.97□□□□□ -0.33
COL17A1-201ENST00000353479 PPIAL4FP0DN26 164 aa12.97□□□□□ -0.33
COL17A1-201ENST00000353479 SLC35D1Q9NTN3 355 aa12.97□□□□□ -0.33
COL17A1-201ENST00000353479 PPIAL4AQ9Y536 164 aa12.97□□□□□ -0.33
COL17A1-201ENST00000353479 RAB32Q13637 225 aa12.96□□□□□ -0.33
COL17A1-201ENST00000353479 CEACAM21Q3KPI0 293 aa12.96□□□□□ -0.33
COL17A1-201ENST00000353479 PXDC1Q5TGL8 231 aa12.96□□□□□ -0.33
COL17A1-201ENST00000353479 MRPL14Q6P1L8 145 aaKnown RBP12.96□□□□□ -0.33
COL17A1-201ENST00000353479 OR5H1A6NKK0 313 aa12.96□□□□□ -0.33
COL17A1-201ENST00000353479 TBX6O95947 436 aaPredicted RBP12.96□□□□□ -0.33
COL17A1-201ENST00000353479 PDGFAP04085 211 aa12.96□□□□□ -0.33
COL17A1-201ENST00000353479 CT45A10P0DMU9 189 aa12.96□□□□□ -0.33
COL17A1-201ENST00000353479 ST8SIA2Q92186 375 aa12.96□□□□□ -0.33
COL17A1-201ENST00000353479 DUS4LO95620 317 aaKnown RBP12.96□□□□□ -0.33
COL17A1-201ENST00000353479 CTSDP07339 412 aaPredicted RBP12.96□□□□□ -0.33
COL17A1-201ENST00000353479 UMODP07911 640 aa12.96□□□□□ -0.33
COL17A1-201ENST00000353479 COL10A1Q03692 680 aa12.96□□□□□ -0.33
COL17A1-201ENST00000353479 C19orf57Q0VDD7 668 aa12.96□□□□□ -0.33
COL17A1-201ENST00000353479 KLRB1Q12918 225 aa12.96□□□□□ -0.33
COL17A1-201ENST00000353479 EXOSC2Q13868 293 aaKnown RBP12.96□□□□□ -0.33
COL17A1-201ENST00000353479 TCTE3Q8IZS6 198 aa12.96□□□□□ -0.33
COL17A1-201ENST00000353479 FLVCR1-AS1Q8TAF5 88 aa12.96□□□□□ -0.33
COL17A1-201ENST00000353479 ZNF703Q9H7S9 590 aaPredicted RBP12.96□□□□□ -0.33
COL17A1-201ENST00000353479 NPTNQ9Y639 398 aa12.96□□□□□ -0.33
COL17A1-201ENST00000353479 GVINP1Q7Z2Y8 2422 aa12.96□□□□□ -0.34
COL17A1-201ENST00000353479 CLN5O75503 358 aa12.96□□□□□ -0.34
COL17A1-201ENST00000353479 FAM87AP0C7U9 286 aa12.96□□□□□ -0.34
COL17A1-201ENST00000353479 RRASP10301 218 aa12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms