RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 FAM186AA6NE01 2351 aa18.7■□□□□ 0.58
SHMT1-202ENST00000352886 E5RGE8 158 aa18.7■□□□□ 0.58
SHMT1-202ENST00000352886 NME2P1O60361 137 aa18.7■□□□□ 0.58
SHMT1-202ENST00000352886 SS18L1O75177 396 aaPredicted RBP18.7■□□□□ 0.58
SHMT1-202ENST00000352886 JTBO76095 146 aa18.7■□□□□ 0.58
SHMT1-202ENST00000352886 CLEC9AQ6UXN8 241 aa18.7■□□□□ 0.58
SHMT1-202ENST00000352886 C5orf24Q7Z6I8 188 aa18.7■□□□□ 0.58
SHMT1-202ENST00000352886 SAXO1Q8IYX7 474 aa18.7■□□□□ 0.58
SHMT1-202ENST00000352886 OR52M1Q8NGK5 317 aa18.7■□□□□ 0.58
SHMT1-202ENST00000352886 NSG2Q9Y328 171 aa18.7■□□□□ 0.58
SHMT1-202ENST00000352886 LIPGQ9Y5X9 500 aa18.7■□□□□ 0.58
SHMT1-202ENST00000352886 HSPB6O14558 160 aa18.69■□□□□ 0.58
SHMT1-202ENST00000352886 GAPDHP04406 335 aaKnown RBP18.69■□□□□ 0.58
SHMT1-202ENST00000352886 LPAR6P43657 344 aa18.69■□□□□ 0.58
SHMT1-202ENST00000352886 PLP2Q04941 152 aa18.69■□□□□ 0.58
SHMT1-202ENST00000352886 GUCA2BQ16661 112 aa18.69■□□□□ 0.58
SHMT1-202ENST00000352886 SHEQ5VZ18 495 aa18.69■□□□□ 0.58
SHMT1-202ENST00000352886 PUSL1Q8N0Z8 303 aaKnown RBP18.69■□□□□ 0.58
SHMT1-202ENST00000352886 SVBPQ8N300 66 aa18.69■□□□□ 0.58
SHMT1-202ENST00000352886 ERGIC1Q969X5 290 aa18.69■□□□□ 0.58
SHMT1-202ENST00000352886 LOXL4Q96JB6 756 aa18.69■□□□□ 0.58
SHMT1-202ENST00000352886 TP53RKQ96S44 253 aa18.69■□□□□ 0.58
SHMT1-202ENST00000352886 C12orf49Q9H741 205 aa18.69■□□□□ 0.58
SHMT1-202ENST00000352886 TREM1Q9NP99 234 aa18.69■□□□□ 0.58
SHMT1-202ENST00000352886 PRSS50Q9UI38 385 aa18.69■□□□□ 0.58
SHMT1-202ENST00000352886 F8W036 122 aa18.69■□□□□ 0.58
SHMT1-202ENST00000352886 NOVA1P51513 510 aaKnown RBP18.69■□□□□ 0.58
SHMT1-202ENST00000352886 BLOC1S1P78537 153 aa18.69■□□□□ 0.58
SHMT1-202ENST00000352886 ZNF169Q14929 603 aaPredicted RBP18.69■□□□□ 0.58
SHMT1-202ENST00000352886 MEX3BQ6ZN04 569 aaKnown RBP18.69■□□□□ 0.58
SHMT1-202ENST00000352886 MDS2Q8NDY4 140 aa18.69■□□□□ 0.58
SHMT1-202ENST00000352886 WNT2BQ93097 391 aa18.69■□□□□ 0.58
SHMT1-202ENST00000352886 PLSCR2Q9NRY7 297 aa18.69■□□□□ 0.58
SHMT1-202ENST00000352886 FAM86C1Q9NVL1 165 aa18.69■□□□□ 0.58
SHMT1-202ENST00000352886 TRAPPC2LH3BP13 241 aa18.68■□□□□ 0.58
SHMT1-202ENST00000352886 KLRC4-KLRK1H3BQV0 150 aa18.68■□□□□ 0.58
SHMT1-202ENST00000352886 DUSP1P28562 367 aa18.68■□□□□ 0.58
SHMT1-202ENST00000352886 SULT1A2P50226 295 aa18.68■□□□□ 0.58
SHMT1-202ENST00000352886 B2MP61769 119 aa18.68■□□□□ 0.58
SHMT1-202ENST00000352886 HES3Q5TGS1 186 aa18.68■□□□□ 0.58
SHMT1-202ENST00000352886 LINC00518Q8N0U6 118 aa18.68■□□□□ 0.58
SHMT1-202ENST00000352886 Q9N2K0 584 aa18.68■□□□□ 0.58
SHMT1-202ENST00000352886 FBXW12Q6X9E4 464 aa18.68■□□□□ 0.58
SHMT1-202ENST00000352886 FER1L6-AS2Q96M78 137 aa18.68■□□□□ 0.58
SHMT1-202ENST00000352886 RHOFQ9HBH0 211 aa18.68■□□□□ 0.58
SHMT1-202ENST00000352886 C3orf85A0A1B0GTC6 90 aa18.67■□□□□ 0.58
SHMT1-202ENST00000352886 CD300LBA8K4G0 201 aa18.67■□□□□ 0.58
SHMT1-202ENST00000352886 NAPSAO96009 420 aa18.67■□□□□ 0.58
SHMT1-202ENST00000352886 SLC10A1Q14973 349 aa18.67■□□□□ 0.58
SHMT1-202ENST00000352886 Q6ZS49 121 aa18.67■□□□□ 0.58
SHMT1-202ENST00000352886 PNPLA5Q7Z6Z6 429 aaPredicted RBP18.67■□□□□ 0.58
SHMT1-202ENST00000352886 MKXQ8IYA7 352 aa18.67■□□□□ 0.58
SHMT1-202ENST00000352886 IL22RA1Q8N6P7 574 aa18.67■□□□□ 0.58
SHMT1-202ENST00000352886 SLC35G3Q8N808 338 aa18.67■□□□□ 0.58
SHMT1-202ENST00000352886 HIST1H2AAQ96QV6 131 aa18.67■□□□□ 0.58
SHMT1-202ENST00000352886 UQCC1Q9NVA1 299 aa18.67■□□□□ 0.58
SHMT1-202ENST00000352886 PLA2G2EQ9NZK7 142 aa18.67■□□□□ 0.58
SHMT1-202ENST00000352886 RCC2Q9P258 522 aaKnown RBP18.67■□□□□ 0.58
SHMT1-202ENST00000352886 FAM96BQ9Y3D0 163 aa18.67■□□□□ 0.58
SHMT1-202ENST00000352886 ESPL1Q14674 2120 aa18.67■□□□□ 0.58
SHMT1-202ENST00000352886 MPPED1O15442 326 aa18.66■□□□□ 0.58
SHMT1-202ENST00000352886 SYNGR1O43759 233 aa18.66■□□□□ 0.58
SHMT1-202ENST00000352886 SCTP09683 121 aa18.66■□□□□ 0.58
SHMT1-202ENST00000352886 SPINK2P20155 84 aa18.66■□□□□ 0.58
SHMT1-202ENST00000352886 GNRHRP30968 328 aa18.66■□□□□ 0.58
SHMT1-202ENST00000352886 HIKESHIQ53FT3 197 aa18.66■□□□□ 0.58
SHMT1-202ENST00000352886 OR5A2Q8NGI9 324 aa18.66■□□□□ 0.58
SHMT1-202ENST00000352886 LILRB1Q8NHL6 650 aaPredicted RBP18.66■□□□□ 0.58
SHMT1-202ENST00000352886 NEK7Q8TDX7 302 aa18.66■□□□□ 0.58
SHMT1-202ENST00000352886 BSCL2Q96G97 398 aaPredicted RBP18.66■□□□□ 0.58
SHMT1-202ENST00000352886 IP6K3Q96PC2 410 aa18.66■□□□□ 0.58
SHMT1-202ENST00000352886 ADAT1Q9BUB4 502 aaKnown RBP18.66■□□□□ 0.58
SHMT1-202ENST00000352886 TLNRD1Q9H1K6 362 aa18.66■□□□□ 0.58
SHMT1-202ENST00000352886 DEFB127Q9H1M4 99 aa18.66■□□□□ 0.58
SHMT1-202ENST00000352886 OR51B6Q9H340 312 aa18.66■□□□□ 0.58
SHMT1-202ENST00000352886 TSC22D1Q15714 1073 aa18.66■□□□□ 0.58
SHMT1-202ENST00000352886 MPV17LQ2QL34 196 aa18.66■□□□□ 0.58
SHMT1-202ENST00000352886 C10orf91Q5T1B1 145 aa18.66■□□□□ 0.58
SHMT1-202ENST00000352886 ATP1A1-AS1Q5TC04 95 aa18.66■□□□□ 0.58
SHMT1-202ENST00000352886 HAGHLQ6PII5 290 aaPredicted RBP18.66■□□□□ 0.58
SHMT1-202ENST00000352886 DPPA2Q7Z7J5 298 aa18.66■□□□□ 0.58
SHMT1-202ENST00000352886 TMED3Q9Y3Q3 217 aa18.66■□□□□ 0.58
SHMT1-202ENST00000352886 LILRA1O75019 489 aa18.65■□□□□ 0.58
SHMT1-202ENST00000352886 TK1P04183 234 aa18.65■□□□□ 0.58
SHMT1-202ENST00000352886 CAV2P51636 162 aa18.65■□□□□ 0.58
SHMT1-202ENST00000352886 UBAC2Q8NBM4 344 aa18.65■□□□□ 0.58
SHMT1-202ENST00000352886 SECTM1Q8WVN6 248 aa18.65■□□□□ 0.58
SHMT1-202ENST00000352886 R4GN57 208 aa18.65■□□□□ 0.58
SHMT1-202ENST00000352886 ST8SIA3O43173 380 aa18.65■□□□□ 0.58
SHMT1-202ENST00000352886 MUC1P15941 1255 aaPredicted RBP18.65■□□□□ 0.58
SHMT1-202ENST00000352886 APLNRP35414 380 aa18.65■□□□□ 0.58
SHMT1-202ENST00000352886 WNT5AP41221 380 aa18.65■□□□□ 0.58
SHMT1-202ENST00000352886 CLN3Q13286 438 aa18.65■□□□□ 0.58
SHMT1-202ENST00000352886 SPIN3Q5JUX0 258 aa18.65■□□□□ 0.58
SHMT1-202ENST00000352886 ZFP62Q8NB50 900 aaPredicted RBP18.65■□□□□ 0.58
SHMT1-202ENST00000352886 OPA3Q9H6K4 179 aa18.65■□□□□ 0.58
SHMT1-202ENST00000352886 ZFP57Q9NU63 452 aa18.65■□□□□ 0.58
SHMT1-202ENST00000352886 CARHSP1Q9Y2V2 147 aaKnown RBP18.65■□□□□ 0.58
SHMT1-202ENST00000352886 PRSS44E7EML9 344 aa18.64■□□□□ 0.58
SHMT1-202ENST00000352886 IL18BPO95998 194 aa18.64■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms