RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 BPESC1Q9GZL8 116 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 IL19Q9UHD0 177 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 OTOGQ6ZRI0 2925 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 NF1P21359 2839 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 A0A0A6YYD4 124 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 MEIOCA2RUB1 952 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 METTL21EPA6NDL7 271 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 SMAD7O15105 426 aaKnown RBP7.74□□□□□ -1.17
USP4-202ENST00000351842 INPP1P49441 399 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 DAZAP2Q15038 168 aaPredicted RBP7.74□□□□□ -1.17
USP4-202ENST00000351842 SSX8Q7RTT4 187 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 TRAPPC6BQ86SZ2 158 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 PEG10Q86TG7 708 aaKnown RBP7.74□□□□□ -1.17
USP4-202ENST00000351842 GVQW1Q8N7I0 195 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 DUSP18Q8NEJ0 188 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 DACT3Q96B18 629 aaPredicted RBP7.74□□□□□ -1.17
USP4-202ENST00000351842 RAB3CQ96E17 227 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 URM1Q9BTM9 101 aaKnown RBP7.74□□□□□ -1.17
USP4-202ENST00000351842 SLC22A4Q9H015 551 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 DHRS7CA6NNS2 312 aa7.73□□□□□ -1.17
USP4-202ENST00000351842 IGHV4-39P01824 125 aa7.73□□□□□ -1.17
USP4-202ENST00000351842 CSF3P09919 207 aa7.73□□□□□ -1.17
USP4-202ENST00000351842 ZMYND11Q15326 602 aa7.73□□□□□ -1.17
USP4-202ENST00000351842 ZNF57Q68EA5 555 aaPredicted RBP7.73□□□□□ -1.17
USP4-202ENST00000351842 Q6ZTK2 550 aa7.73□□□□□ -1.17
USP4-202ENST00000351842 SLC25A28Q96A46 364 aa7.73□□□□□ -1.17
USP4-202ENST00000351842 FOXRED1Q96CU9 486 aaPredicted RBP7.73□□□□□ -1.17
USP4-202ENST00000351842 CPNE2Q96FN4 548 aaPredicted RBP7.73□□□□□ -1.17
USP4-202ENST00000351842 CYSLTR2Q9NS75 346 aa7.73□□□□□ -1.17
USP4-202ENST00000351842 SPATA2Q9UM82 520 aa7.73□□□□□ -1.17
USP4-202ENST00000351842 A0A1W2PRD5 423 aa7.73□□□□□ -1.17
USP4-202ENST00000351842 A0A1W2PRF3 423 aa7.73□□□□□ -1.17
USP4-202ENST00000351842 A0A1W2PRM7 423 aa7.73□□□□□ -1.17
USP4-202ENST00000351842 SEC61A1P61619 476 aaKnown RBP7.73□□□□□ -1.17
USP4-202ENST00000351842 TAGLNQ01995 201 aaKnown RBP7.73□□□□□ -1.17
USP4-202ENST00000351842 COL10A1Q03692 680 aa7.73□□□□□ -1.17
USP4-202ENST00000351842 SMIM21Q3B7S5 101 aa7.73□□□□□ -1.17
USP4-202ENST00000351842 C3orf36Q3SXR2 165 aa7.73□□□□□ -1.17
USP4-202ENST00000351842 CDNFQ49AH0 187 aa7.73□□□□□ -1.17
USP4-202ENST00000351842 OR52W1Q6IF63 320 aa7.73□□□□□ -1.17
USP4-202ENST00000351842 IDO2Q6ZQW0 420 aa7.73□□□□□ -1.17
USP4-202ENST00000351842 OR4S1Q8NGB4 309 aa7.73□□□□□ -1.17
USP4-202ENST00000351842 C10orf35Q96D05 121 aa7.73□□□□□ -1.17
USP4-202ENST00000351842 LPAR5Q9H1C0 372 aa7.73□□□□□ -1.17
USP4-202ENST00000351842 DIABLOQ9NR28 239 aa7.73□□□□□ -1.17
USP4-202ENST00000351842 MCUBQ9NWR8 336 aa7.73□□□□□ -1.17
USP4-202ENST00000351842 KLK11Q9UBX7 282 aa7.73□□□□□ -1.17
USP4-202ENST00000351842 HIVEP1P15822 2718 aa7.73□□□□□ -1.17
USP4-202ENST00000351842 PLA2G10O15496 165 aa7.73□□□□□ -1.17
USP4-202ENST00000351842 OR2H2O95918 312 aa7.73□□□□□ -1.17
USP4-202ENST00000351842 HAND1O96004 215 aa7.73□□□□□ -1.17
USP4-202ENST00000351842 PSG2P11465 335 aa7.73□□□□□ -1.17
USP4-202ENST00000351842 DGCR2P98153 550 aa7.73□□□□□ -1.17
USP4-202ENST00000351842 ZNF529Q6P280 563 aa7.73□□□□□ -1.17
USP4-202ENST00000351842 ZNF600Q6ZNG1 722 aa7.73□□□□□ -1.17
USP4-202ENST00000351842 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.73□□□□□ -1.17
USP4-202ENST00000351842 RBMXL1Q96E39 390 aaKnown RBP7.73□□□□□ -1.17
USP4-202ENST00000351842 C1orf147Q96MC9 270 aaPredicted RBP7.73□□□□□ -1.17
USP4-202ENST00000351842 ABHD1Q96SE0 405 aa7.73□□□□□ -1.17
USP4-202ENST00000351842 NLKQ9UBE8 527 aa7.73□□□□□ -1.17
USP4-202ENST00000351842 ZNF221Q9UK13 617 aa7.73□□□□□ -1.17
USP4-202ENST00000351842 PDZD2O15018 2839 aa7.72□□□□□ -1.17
USP4-202ENST00000351842 PPIAL4EA0A075B759 164 aa7.72□□□□□ -1.17
USP4-202ENST00000351842 A0A1W2PQ09 198 aa7.72□□□□□ -1.17
USP4-202ENST00000351842 PPIAL4DF5H284 164 aa7.72□□□□□ -1.17
USP4-202ENST00000351842 PSPNO60542 156 aa7.72□□□□□ -1.17
USP4-202ENST00000351842 CCNKO75909 580 aa7.72□□□□□ -1.17
USP4-202ENST00000351842 PPIAL4FP0DN26 164 aa7.72□□□□□ -1.17
USP4-202ENST00000351842 RPS2P15880 293 aaKnown RBP7.72□□□□□ -1.17
USP4-202ENST00000351842 GLP1RP43220 463 aa7.72□□□□□ -1.17
USP4-202ENST00000351842 GPR6P46095 362 aaPredicted RBP7.72□□□□□ -1.17
USP4-202ENST00000351842 GRK1Q15835 563 aa7.72□□□□□ -1.17
USP4-202ENST00000351842 FAM53AQ6NSI3 398 aaPredicted RBP7.72□□□□□ -1.17
USP4-202ENST00000351842 SULT4A1Q9BR01 284 aa7.72□□□□□ -1.17
USP4-202ENST00000351842 WIPI2Q9Y4P8 454 aa7.72□□□□□ -1.17
USP4-202ENST00000351842 PPIAL4AQ9Y536 164 aa7.72□□□□□ -1.17
USP4-202ENST00000351842 FN1P02751 2386 aaKnown RBP7.72□□□□□ -1.17
USP4-202ENST00000351842 MEIKINA0A087WXM9 373 aa7.72□□□□□ -1.17
USP4-202ENST00000351842 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP7.72□□□□□ -1.17
USP4-202ENST00000351842 BPNT1O95861 308 aa7.72□□□□□ -1.17
USP4-202ENST00000351842 PGA5P0DJD9 388 aa7.72□□□□□ -1.17
USP4-202ENST00000351842 CPT2P23786 658 aa7.72□□□□□ -1.17
USP4-202ENST00000351842 PRDX2P32119 198 aa7.72□□□□□ -1.17
USP4-202ENST00000351842 RBM11P57052 281 aaKnown RBP7.72□□□□□ -1.17
USP4-202ENST00000351842 PLAC9Q5JTB6 97 aa7.72□□□□□ -1.17
USP4-202ENST00000351842 C1orf100Q5SVJ3 147 aa7.72□□□□□ -1.17
USP4-202ENST00000351842 TCTE3Q8IZS6 198 aa7.72□□□□□ -1.17
USP4-202ENST00000351842 MXRA5Q9NR99 2828 aa7.71□□□□□ -1.17
USP4-202ENST00000351842 A0A0B4J293 547 aa7.71□□□□□ -1.17
USP4-202ENST00000351842 RCC1P18754 421 aaPredicted RBP7.71□□□□□ -1.17
USP4-202ENST00000351842 TAS2R20P59543 309 aa7.71□□□□□ -1.17
USP4-202ENST00000351842 CDK10Q15131 360 aa7.71□□□□□ -1.17
USP4-202ENST00000351842 EFNB3Q15768 340 aa7.71□□□□□ -1.17
USP4-202ENST00000351842 UBE2NLQ5JXB2 153 aa7.71□□□□□ -1.17
USP4-202ENST00000351842 METTL11BQ5VVY1 283 aa7.71□□□□□ -1.17
USP4-202ENST00000351842 ACP7Q6ZNF0 438 aa7.71□□□□□ -1.17
USP4-202ENST00000351842 CD177Q8N6Q3 437 aa7.71□□□□□ -1.17
USP4-202ENST00000351842 NRIP2Q9BQI9 281 aa7.71□□□□□ -1.17
USP4-202ENST00000351842 ABRACLQ9P1F3 81 aa7.71□□□□□ -1.17
USP4-202ENST00000351842 RAB22AQ9UL26 194 aa7.71□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms