RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 NKX2-1P43699 371 aaPredicted RBP19.35■□□□□ 0.69
TRIM28-202ENST00000341753 DYNLT3P51808 116 aa19.35■□□□□ 0.69
TRIM28-202ENST00000341753 KHDC3LQ587J8 217 aa19.35■□□□□ 0.69
TRIM28-202ENST00000341753 C17orf78Q8N4C9 275 aa19.35■□□□□ 0.69
TRIM28-202ENST00000341753 C3orf85A0A1B0GTC6 90 aa19.35■□□□□ 0.69
TRIM28-202ENST00000341753 A0A1B0GV90 55 aa19.35■□□□□ 0.69
TRIM28-202ENST00000341753 PROB1E7EW31 1015 aa19.35■□□□□ 0.69
TRIM28-202ENST00000341753 DTYMKP23919 212 aa19.35■□□□□ 0.69
TRIM28-202ENST00000341753 GAMTQ14353 236 aa19.35■□□□□ 0.69
TRIM28-202ENST00000341753 ZNF266Q14584 549 aa19.35■□□□□ 0.69
TRIM28-202ENST00000341753 SPIN3Q5JUX0 258 aa19.35■□□□□ 0.69
TRIM28-202ENST00000341753 MOB3AQ96BX8 217 aa19.35■□□□□ 0.69
TRIM28-202ENST00000341753 TMEM252Q8N6L7 170 aa19.34■□□□□ 0.69
TRIM28-202ENST00000341753 CCDC54Q8NEL0 328 aa19.34■□□□□ 0.69
TRIM28-202ENST00000341753 C14orf144Q96I85 54 aa19.34■□□□□ 0.69
TRIM28-202ENST00000341753 MYOTQ9UBF9 498 aa19.34■□□□□ 0.69
TRIM28-202ENST00000341753 ST3GAL6Q9Y274 331 aa19.34■□□□□ 0.69
TRIM28-202ENST00000341753 TMED3Q9Y3Q3 217 aa19.34■□□□□ 0.69
TRIM28-202ENST00000341753 SDK2Q58EX2 2172 aa19.34■□□□□ 0.69
TRIM28-202ENST00000341753 FABP4P15090 132 aa19.34■□□□□ 0.69
TRIM28-202ENST00000341753 MDKP21741 143 aaPredicted RBP19.34■□□□□ 0.69
TRIM28-202ENST00000341753 MSX1P28360 303 aa19.34■□□□□ 0.69
TRIM28-202ENST00000341753 ZNF286AQ9HBT8 521 aa19.34■□□□□ 0.69
TRIM28-202ENST00000341753 P4HTMQ9NXG6 502 aa19.34■□□□□ 0.69
TRIM28-202ENST00000341753 KIAA1456Q9P272 454 aa19.34■□□□□ 0.69
TRIM28-202ENST00000341753 PPP1R2P9O14990 202 aa19.33■□□□□ 0.69
TRIM28-202ENST00000341753 TMEM50AO95807 157 aa19.33■□□□□ 0.69
TRIM28-202ENST00000341753 NKX6-1P78426 367 aaPredicted RBP19.33■□□□□ 0.69
TRIM28-202ENST00000341753 TMEM123Q8N131 208 aa19.33■□□□□ 0.69
TRIM28-202ENST00000341753 NAT6Q93015 286 aa19.33■□□□□ 0.69
TRIM28-202ENST00000341753 HLA-CQ95604 372 aa19.33■□□□□ 0.69
TRIM28-202ENST00000341753 BORCS8Q96FH0 119 aa19.33■□□□□ 0.69
TRIM28-202ENST00000341753 MEGF10Q96KG7 1140 aa19.33■□□□□ 0.69
TRIM28-202ENST00000341753 NIPSNAP3BQ9BS92 247 aa19.33■□□□□ 0.69
TRIM28-202ENST00000341753 ANGPTL4Q9BY76 406 aa19.33■□□□□ 0.69
TRIM28-202ENST00000341753 OPA3Q9H6K4 179 aa19.33■□□□□ 0.69
TRIM28-202ENST00000341753 GFOD1Q9NXC2 390 aa19.33■□□□□ 0.69
TRIM28-202ENST00000341753 WNT16Q9UBV4 365 aa19.33■□□□□ 0.69
TRIM28-202ENST00000341753 UBE2J1Q9Y385 318 aaPredicted RBP19.33■□□□□ 0.69
TRIM28-202ENST00000341753 LY6G6EA0A0G2JKS1 128 aa19.33■□□□□ 0.68
TRIM28-202ENST00000341753 G3V3Y1 287 aa19.33■□□□□ 0.68
TRIM28-202ENST00000341753 MPPED1O15442 326 aa19.33■□□□□ 0.68
TRIM28-202ENST00000341753 ADAM20O43506 726 aa19.33■□□□□ 0.68
TRIM28-202ENST00000341753 OR2T2Q6IF00 324 aa19.33■□□□□ 0.68
TRIM28-202ENST00000341753 TVP23CQ96ET8 276 aa19.33■□□□□ 0.68
TRIM28-202ENST00000341753 C11orf1Q9H5F2 150 aa19.33■□□□□ 0.68
TRIM28-202ENST00000341753 U3KQA8 63 aa19.33■□□□□ 0.68
TRIM28-202ENST00000341753 ZNF587BE7ETH6 402 aa19.32■□□□□ 0.68
TRIM28-202ENST00000341753 PITX3O75364 302 aa19.32■□□□□ 0.68
TRIM28-202ENST00000341753 F10P00742 488 aa19.32■□□□□ 0.68
TRIM28-202ENST00000341753 RPL23AP62750 156 aaKnown RBP19.32■□□□□ 0.68
TRIM28-202ENST00000341753 VAMP2P63027 116 aa19.32■□□□□ 0.68
TRIM28-202ENST00000341753 ZNF154Q13106 437 aa19.32■□□□□ 0.68
TRIM28-202ENST00000341753 ODF3L1Q8IXM7 274 aa19.32■□□□□ 0.68
TRIM28-202ENST00000341753 HIST3H2BBQ8N257 126 aa19.32■□□□□ 0.68
TRIM28-202ENST00000341753 ZNF442Q9H7R0 627 aa19.32■□□□□ 0.68
TRIM28-202ENST00000341753 UNKLQ9H9P5 680 aaKnown RBP19.32■□□□□ 0.68
TRIM28-202ENST00000341753 EML6Q6ZMW3 1958 aa19.32■□□□□ 0.68
TRIM28-202ENST00000341753 IGHV5-10-1A0A0J9YXX1 117 aa19.32■□□□□ 0.68
TRIM28-202ENST00000341753 TRDCB7Z8K6 153 aa19.32■□□□□ 0.68
TRIM28-202ENST00000341753 DHHO43323 396 aa19.32■□□□□ 0.68
TRIM28-202ENST00000341753 PPYP01298 95 aa19.32■□□□□ 0.68
TRIM28-202ENST00000341753 CELA2AP08217 269 aa19.32■□□□□ 0.68
TRIM28-202ENST00000341753 EIF3IQ13347 325 aaKnown RBP19.32■□□□□ 0.68
TRIM28-202ENST00000341753 ZNF695Q8IW36 515 aa19.32■□□□□ 0.68
TRIM28-202ENST00000341753 CARFQ8N187 725 aa19.32■□□□□ 0.68
TRIM28-202ENST00000341753 FRZBQ92765 325 aa19.32■□□□□ 0.68
TRIM28-202ENST00000341753 SPTSSAQ969W0 71 aa19.32■□□□□ 0.68
TRIM28-202ENST00000341753 SEC14L6B5MCN3 397 aa19.31■□□□□ 0.68
TRIM28-202ENST00000341753 LCATP04180 440 aa19.31■□□□□ 0.68
TRIM28-202ENST00000341753 CD63P08962 238 aa19.31■□□□□ 0.68
TRIM28-202ENST00000341753 TRGC1P0CF51 173 aa19.31■□□□□ 0.68
TRIM28-202ENST00000341753 OTX1P32242 354 aaPredicted RBP19.31■□□□□ 0.68
TRIM28-202ENST00000341753 ZNF774Q6NX45 483 aa19.31■□□□□ 0.68
TRIM28-202ENST00000341753 TBC1D26Q86UD7 250 aa19.31■□□□□ 0.68
TRIM28-202ENST00000341753 KMT5CQ86Y97 462 aa19.31■□□□□ 0.68
TRIM28-202ENST00000341753 OSR2Q8N2R0 312 aa19.31■□□□□ 0.68
TRIM28-202ENST00000341753 CCDC71LQ8N9Z2 235 aa19.31■□□□□ 0.68
TRIM28-202ENST00000341753 PLEKHF2Q9H8W4 249 aa19.31■□□□□ 0.68
TRIM28-202ENST00000341753 OCIAD1Q9NX40 245 aa19.31■□□□□ 0.68
TRIM28-202ENST00000341753 H3BP45 60 aa19.31■□□□□ 0.68
TRIM28-202ENST00000341753 RBP2P50120 134 aa19.31■□□□□ 0.68
TRIM28-202ENST00000341753 ABHD5Q8WTS1 349 aa19.31■□□□□ 0.68
TRIM28-202ENST00000341753 CCDC74BQ96LY2 380 aa19.31■□□□□ 0.68
TRIM28-202ENST00000341753 CALHM2Q9HA72 323 aa19.31■□□□□ 0.68
TRIM28-202ENST00000341753 FOXD3Q9UJU5 478 aaPredicted RBP19.31■□□□□ 0.68
TRIM28-202ENST00000341753 NPIPA2E9PIF3 369 aa19.31■□□□□ 0.68
TRIM28-202ENST00000341753 NPIPA3F8WFD2 350 aa19.31■□□□□ 0.68
TRIM28-202ENST00000341753 AKR1C8PQ5T2L2 129 aa19.31■□□□□ 0.68
TRIM28-202ENST00000341753 RNF138Q8WVD3 245 aa19.31■□□□□ 0.68
TRIM28-202ENST00000341753 ULBP2Q9BZM5 246 aa19.31■□□□□ 0.68
TRIM28-202ENST00000341753 TGIF2Q9GZN2 237 aa19.31■□□□□ 0.68
TRIM28-202ENST00000341753 OR7C1O76099 320 aaPredicted RBP19.3■□□□□ 0.68
TRIM28-202ENST00000341753 HIST1H1BP16401 226 aaKnown RBP19.3■□□□□ 0.68
TRIM28-202ENST00000341753 GNRHRP30968 328 aa19.3■□□□□ 0.68
TRIM28-202ENST00000341753 GLIPR1P48060 266 aa19.3■□□□□ 0.68
TRIM28-202ENST00000341753 CLDND2Q8NHS1 167 aa19.3■□□□□ 0.68
TRIM28-202ENST00000341753 SPSB1Q96BD6 273 aa19.3■□□□□ 0.68
TRIM28-202ENST00000341753 SMDT1Q9H4I9 107 aa19.3■□□□□ 0.68
TRIM28-202ENST00000341753 SLC7A10Q9NS82 523 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms