RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 ZNF534Q76KX8 674 aa3.15□□□□□ -1.91
SYNE1-201ENST00000341594 CENPVQ7Z7K6 275 aaPredicted RBP3.15□□□□□ -1.91
SYNE1-201ENST00000341594 TIMM10BQ9Y5J6 103 aa3.15□□□□□ -1.91
SYNE1-201ENST00000341594 Q499Y3 187 aa3.15□□□□□ -1.91
SYNE1-201ENST00000341594 NCBP2-AS2Q69YL0 99 aa3.15□□□□□ -1.91
SYNE1-201ENST00000341594 RNF144BQ7Z419 303 aa3.15□□□□□ -1.91
SYNE1-201ENST00000341594 TMED6Q8WW62 240 aa3.15□□□□□ -1.91
SYNE1-201ENST00000341594 SLC35G5Q96KT7 338 aa3.15□□□□□ -1.91
SYNE1-201ENST00000341594 NOX4Q9NPH5 578 aa3.15□□□□□ -1.91
SYNE1-201ENST00000341594 STUMQ69YW2 141 aa3.15□□□□□ -1.91
SYNE1-201ENST00000341594 INO80CQ6PI98 192 aaPredicted RBP3.15□□□□□ -1.91
SYNE1-201ENST00000341594 PRSS57Q6UWY2 283 aa3.15□□□□□ -1.91
SYNE1-201ENST00000341594 PPP1R35Q8TAP8 253 aa3.15□□□□□ -1.91
SYNE1-201ENST00000341594 RNF2Q99496 336 aa3.15□□□□□ -1.91
SYNE1-201ENST00000341594 INSL5Q9Y5Q6 135 aa3.15□□□□□ -1.91
SYNE1-201ENST00000341594 F11RQ9Y624 299 aaKnown RBP3.15□□□□□ -1.91
SYNE1-201ENST00000341594 ELAVL3Q14576 367 aaKnown RBP3.15□□□□□ -1.91
SYNE1-201ENST00000341594 SIRT6Q8N6T7 355 aa3.15□□□□□ -1.91
SYNE1-201ENST00000341594 LRTM2Q8N967 370 aa3.15□□□□□ -1.91
SYNE1-201ENST00000341594 ARRDC3Q96B67 414 aa3.15□□□□□ -1.91
SYNE1-201ENST00000341594 ZNF701Q9NV72 531 aaPredicted RBP3.15□□□□□ -1.91
SYNE1-201ENST00000341594 IGKV3-7A0A075B6H7 116 aa3.15□□□□□ -1.91
SYNE1-201ENST00000341594 TMEM202A6NGA9 273 aa3.15□□□□□ -1.91
SYNE1-201ENST00000341594 CLDN4O14493 209 aa3.15□□□□□ -1.91
SYNE1-201ENST00000341594 PMCHL1Q16048 86 aa3.15□□□□□ -1.91
SYNE1-201ENST00000341594 PIGCQ92535 297 aa3.15□□□□□ -1.91
SYNE1-201ENST00000341594 HCAR1Q9BXC0 346 aa3.15□□□□□ -1.91
SYNE1-201ENST00000341594 V9GY05 133 aa3.15□□□□□ -1.91
SYNE1-201ENST00000341594 TRAV8-7A0A075B6U6 113 aa3.15□□□□□ -1.91
SYNE1-201ENST00000341594 C17orf102A2RUQ5 167 aa3.15□□□□□ -1.91
SYNE1-201ENST00000341594 CST7O76096 145 aa3.15□□□□□ -1.91
SYNE1-201ENST00000341594 PYCR3Q53H96 274 aa3.15□□□□□ -1.91
SYNE1-201ENST00000341594 SLC25A43Q8WUT9 341 aaPredicted RBP3.15□□□□□ -1.91
SYNE1-201ENST00000341594 PGLYRP3Q96LB9 341 aa3.15□□□□□ -1.91
SYNE1-201ENST00000341594 DERL1Q9BUN8 251 aa3.15□□□□□ -1.91
SYNE1-201ENST00000341594 REG4Q9BYZ8 158 aa3.15□□□□□ -1.91
SYNE1-201ENST00000341594 OR5H15A6NDH6 313 aa3.15□□□□□ -1.91
SYNE1-201ENST00000341594 OR5H1A6NKK0 313 aa3.15□□□□□ -1.91
SYNE1-201ENST00000341594 PPIAP62937 165 aaKnown RBP3.15□□□□□ -1.91
SYNE1-201ENST00000341594 MZT1Q08AG7 82 aa3.15□□□□□ -1.91
SYNE1-201ENST00000341594 Q1RN00 199 aa3.15□□□□□ -1.91
SYNE1-201ENST00000341594 BAHD1Q8TBE0 780 aaPredicted RBP3.15□□□□□ -1.91
SYNE1-201ENST00000341594 GPR87Q9BY21 358 aa3.15□□□□□ -1.91
SYNE1-201ENST00000341594 RCC2Q9P258 522 aaKnown RBP3.15□□□□□ -1.91
SYNE1-201ENST00000341594 DNMT3BQ9UBC3 853 aaKnown RBP3.15□□□□□ -1.91
SYNE1-201ENST00000341594 A0A0U1RQF3 1178 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 SEMA7AO75326 666 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 ELOCQ15369 112 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 ELOBQ15370 118 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 TCTN1Q2MV58 587 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 PSAPL1Q6NUJ1 521 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 PCED1BQ96HM7 432 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 TMEM27Q9HBJ8 222 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 FOXJ2Q9P0K8 574 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 POLR2HP52434 150 aaKnown RBP3.14□□□□□ -1.91
SYNE1-201ENST00000341594 OR52R1Q8NGF1 315 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 SPSB4Q96A44 273 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 C5orf30Q96GV9 206 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 PGPEP1Q9NXJ5 209 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 TLCD2A6NGC4 264 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 C1QL1O75973 258 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 MPIG6BO95866 241 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 IGLV3-25P01717 112 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 ATP1B2P14415 290 aaPredicted RBP3.14□□□□□ -1.91
SYNE1-201ENST00000341594 PLAURQ03405 335 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 ZNF343Q6P1L6 599 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 TMEM184AQ6ZMB5 413 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 ZNF100Q8IYN0 542 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 FNDC4Q9H6D8 234 aaPredicted RBP3.14□□□□□ -1.91
SYNE1-201ENST00000341594 HOXC4P09017 264 aaPredicted RBP3.14□□□□□ -1.91
SYNE1-201ENST00000341594 SELEP16581 610 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 CTXN1P60606 82 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 GAB4Q2WGN9 574 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 CLEC18BQ6UXF7 455 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 C17orf64Q86WR6 236 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 C1orf174Q8IYL3 243 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 PIGLQ9Y2B2 252 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 MED31Q9Y3C7 131 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 ISG15P05161 165 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 BCL6P41182 706 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 PDLIM4P50479 330 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 MMP16P51512 607 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 POU3F1Q03052 451 aaPredicted RBP3.14□□□□□ -1.91
SYNE1-201ENST00000341594 WDR25Q64LD2 544 aaPredicted RBP3.14□□□□□ -1.91
SYNE1-201ENST00000341594 TCTN3Q6NUS6 607 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 TMEM239Q8WW34 195 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 CDX2Q99626 313 aaPredicted RBP3.14□□□□□ -1.91
SYNE1-201ENST00000341594 OR2J3O76001 311 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 AMY2AP04746 511 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 OR8G2PQ6IF36 304 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 FAM57BQ71RH2 274 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 GHSRQ92847 366 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 PADI3Q9ULW8 664 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 TMED7Q9Y3B3 224 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 ZNF385CQ66K41 422 aaPredicted RBP3.14□□□□□ -1.91
SYNE1-201ENST00000341594 LEG1Q6P5S2 330 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 MS4A6EQ96DS6 147 aa3.14□□□□□ -1.91
SYNE1-201ENST00000341594 SPAG8Q99932 426 aaPredicted RBP3.14□□□□□ -1.91
SYNE1-201ENST00000341594 UBE2NP61088 152 aaKnown RBP3.14□□□□□ -1.91
SYNE1-201ENST00000341594 PEAR1Q5VY43 1037 aaPredicted RBP3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms