RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 IAPPP10997 89 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 SSPNQ14714 243 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 UBE2V2Q15819 145 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 VAMP3Q15836 100 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 ETFDHQ16134 617 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 GABRA6Q16445 453 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 RGS7BPQ6MZT1 257 aaPredicted RBP9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 ANKRD37Q7Z713 158 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 OR11G2Q8NGC1 345 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 ZNF98A6NK75 572 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 MASP2O00187 686 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 RER1O15258 196 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 CST7O76096 145 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 G0S2P27469 103 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 TECRQ9NZ01 308 aaKnown RBP9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 ING1Q9UK53 422 aaPredicted RBP9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 OR2W1Q9Y3N9 320 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 SYNGR2O43760 224 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 CD160O95971 181 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 CTGFP29279 349 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 ZFP36L2P47974 494 aaKnown RBP9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 GFERP55789 205 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 KISS1RQ969F8 398 aaPredicted RBP9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 C5orf67F2Z3F1 127 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 FCN1O00602 326 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 GPR37O15354 613 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 NHLRC3Q5JS37 347 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 OR10G3Q8NGC4 313 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 IL22RA2Q969J5 263 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 WSB2Q9NYS7 404 aaPredicted RBP9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 CLCF1Q9UBD9 225 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 OR2A4O95047 310 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 PPYP01298 95 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 HSPB1P04792 205 aaKnown RBP9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 GABRG2P18507 467 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 OR10J1P30954 320 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 TMEM190Q8WZ59 177 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 OR2A7Q96R45 310 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 ZNF576Q9H609 170 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 NAT8BQ9UHF3 227 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 PRSS50Q9UI38 385 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 IGHMP01871 453 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 DRD3P35462 400 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 PAFAH1B2P68402 229 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 ALKBH3Q96Q83 286 aaPredicted RBP9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 CHRNA10Q9GZZ6 450 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 HES4Q9HCC6 221 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 FLRT3Q9NZU0 649 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 DUSP13Q9UII6 198 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 TMEM265A0A087WTH1 108 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 A0A1W2PPV9 198 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 C11orf94C9JXX5 98 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 SP1P08047 785 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 INSM1Q01101 510 aaPredicted RBP9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 C1orf100Q5SVJ3 147 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 NECAP1Q8NC96 275 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 CFHR5Q9BXR6 569 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 YLPM1P49750 1951 aaKnown RBP9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 PQLC2LA1A4F0 135 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 ATP5IP56385 69 aaPredicted RBP9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 CEBPEQ15744 281 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 TMEM97Q5BJF2 176 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 FA2HQ7L5A8 372 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 CCL4L1Q8NHW4 92 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 KCNK15Q9H427 330 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 THYN1Q9P016 225 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 HSPB8Q9UJY1 196 aa9.09□□□□□ -0.95
CCDC88A-202ENST00000336838 H0Y980 276 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 CEACAM6P40199 344 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 IFITM3Q01628 133 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 TMEM30BQ3MIR4 351 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 OR10G4Q8NGN3 311 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 OR10G9Q8NGN4 311 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 OR10G7Q8NGN6 311 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 AQP3Q92482 292 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 YBX2Q9Y2T7 364 aaKnown RBP9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 ISLRO14498 428 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 ASAH2BP0C7U1 165 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 BCL2P10415 239 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 NTF3P20783 257 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 INSL4Q14641 139 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 MICBQ29980 383 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 ADAMTS17Q8TE56 1095 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 DBX1A6NMT0 343 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 PRDX4Q13162 271 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 PERPQ96FX8 193 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 C12orf49Q9H741 205 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 DENND4CQ5VZ89 1909 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 C7orf77A4D0Y5 90 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 BGLAPP02818 100 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 KRTDAPP60985 99 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 ZNF273Q14593 569 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 RPH3ALQ9UNE2 315 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 TIMM9Q9Y5J7 89 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 TCRBV16S1A1N1A0A5B0 115 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 ACAA2P42765 397 aaKnown RBP9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 FAM24BQ8N5W8 94 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 PGLYRP3Q96LB9 341 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 MENTQ9BUN1 341 aa9.08□□□□□ -0.96
CCDC88A-202ENST00000336838 CD82P27701 267 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms