RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 FAM189A2Q15884 450 aa8.5□□□□□ -1.05
HMGB3-201ENST00000325307 ZNF826PQ6ZT77 177 aa8.5□□□□□ -1.05
HMGB3-201ENST00000325307 ZCCHC24Q8N2G6 241 aaKnown RBP8.5□□□□□ -1.05
HMGB3-201ENST00000325307 OSR2Q8N2R0 312 aa8.5□□□□□ -1.05
HMGB3-201ENST00000325307 MUC15Q8N387 334 aa8.5□□□□□ -1.05
HMGB3-201ENST00000325307 PKIBQ9C010 78 aa8.5□□□□□ -1.05
HMGB3-201ENST00000325307 RANBP3Q9H6Z4 567 aaPredicted RBP8.5□□□□□ -1.05
HMGB3-201ENST00000325307 MTCH1Q9NZJ7 389 aa8.5□□□□□ -1.05
HMGB3-201ENST00000325307 ZDHHC8Q9ULC8 765 aa8.5□□□□□ -1.05
HMGB3-201ENST00000325307 ANKRD20A5PA0PJZ0 165 aa8.5□□□□□ -1.05
HMGB3-201ENST00000325307 IGHV1-46P01743 117 aa8.5□□□□□ -1.05
HMGB3-201ENST00000325307 H2AFB1P0C5Y9 115 aa8.5□□□□□ -1.05
HMGB3-201ENST00000325307 H2AFB2P0C5Z0 115 aa8.5□□□□□ -1.05
HMGB3-201ENST00000325307 CPT2P23786 658 aa8.5□□□□□ -1.05
HMGB3-201ENST00000325307 RPS27AP62979 156 aaKnown RBP8.5□□□□□ -1.05
HMGB3-201ENST00000325307 FLI1Q01543 452 aaPredicted RBP8.5□□□□□ -1.05
HMGB3-201ENST00000325307 IL24Q13007 206 aa8.5□□□□□ -1.05
HMGB3-201ENST00000325307 TAF9Q16594 264 aa8.5□□□□□ -1.05
HMGB3-201ENST00000325307 MOGAT2Q3SYC2 334 aa8.5□□□□□ -1.05
HMGB3-201ENST00000325307 RAB12Q6IQ22 244 aa8.5□□□□□ -1.05
HMGB3-201ENST00000325307 ITLN1Q8WWA0 313 aa8.5□□□□□ -1.05
HMGB3-201ENST00000325307 LPAR5Q9H1C0 372 aa8.5□□□□□ -1.05
HMGB3-201ENST00000325307 HRASLSQ9HDD0 168 aa8.5□□□□□ -1.05
HMGB3-201ENST00000325307 C1orf123Q9NWV4 160 aa8.5□□□□□ -1.05
HMGB3-201ENST00000325307 FBLN5Q9UBX5 448 aa8.5□□□□□ -1.05
HMGB3-201ENST00000325307 ST3GAL6Q9Y274 331 aa8.5□□□□□ -1.05
HMGB3-201ENST00000325307 A1L4Q6 167 aa8.5□□□□□ -1.05
HMGB3-201ENST00000325307 SMLR1H3BR10 107 aa8.5□□□□□ -1.05
HMGB3-201ENST00000325307 MPC2O95563 127 aa8.5□□□□□ -1.05
HMGB3-201ENST00000325307 CCL8P80075 99 aa8.5□□□□□ -1.05
HMGB3-201ENST00000325307 PIGYQ3MUY2 71 aa8.5□□□□□ -1.05
HMGB3-201ENST00000325307 SAXO1Q8IYX7 474 aa8.5□□□□□ -1.05
HMGB3-201ENST00000325307 OR11H7Q8NGC8 314 aa8.5□□□□□ -1.05
HMGB3-201ENST00000325307 OR56B1Q8NGI3 324 aa8.5□□□□□ -1.05
HMGB3-201ENST00000325307 MEGF10Q96KG7 1140 aa8.5□□□□□ -1.05
HMGB3-201ENST00000325307 WIPF3A6NGB9 483 aa8.49□□□□□ -1.05
HMGB3-201ENST00000325307 A8MXK9 166 aa8.49□□□□□ -1.05
HMGB3-201ENST00000325307 B9A039 149 aa8.49□□□□□ -1.05
HMGB3-201ENST00000325307 C3orf80F5H4A9 247 aa8.49□□□□□ -1.05
HMGB3-201ENST00000325307 SCGNO76038 276 aa8.49□□□□□ -1.05
HMGB3-201ENST00000325307 NXPH2O95156 264 aa8.49□□□□□ -1.05
HMGB3-201ENST00000325307 LOXP28300 417 aaPredicted RBP8.49□□□□□ -1.05
HMGB3-201ENST00000325307 BLVRBP30043 206 aaPredicted RBP8.49□□□□□ -1.05
HMGB3-201ENST00000325307 SPCS3P61009 180 aa8.49□□□□□ -1.05
HMGB3-201ENST00000325307 TSPAN5P62079 268 aa8.49□□□□□ -1.05
HMGB3-201ENST00000325307 NKAPLQ5M9Q1 402 aa8.49□□□□□ -1.05
HMGB3-201ENST00000325307 ASCL4Q6XD76 172 aa8.49□□□□□ -1.05
HMGB3-201ENST00000325307 CDH24Q86UP0 819 aa8.49□□□□□ -1.05
HMGB3-201ENST00000325307 MOGAT3Q86VF5 341 aa8.49□□□□□ -1.05
HMGB3-201ENST00000325307 TMEM200AQ86VY9 491 aa8.49□□□□□ -1.05
HMGB3-201ENST00000325307 BOLLQ8N9W6 283 aaKnown RBP8.49□□□□□ -1.05
HMGB3-201ENST00000325307 ST8SIA4Q92187 359 aa8.49□□□□□ -1.05
HMGB3-201ENST00000325307 EMG1Q92979 244 aaKnown RBP8.49□□□□□ -1.05
HMGB3-201ENST00000325307 TMEM204Q9BSN7 226 aa8.49□□□□□ -1.05
HMGB3-201ENST00000325307 DPAGT1Q9H3H5 408 aa8.49□□□□□ -1.05
HMGB3-201ENST00000325307 DECR2Q9NUI1 292 aa8.49□□□□□ -1.05
HMGB3-201ENST00000325307 IL36GQ9NZH8 169 aa8.49□□□□□ -1.05
HMGB3-201ENST00000325307 NUBP2Q9Y5Y2 271 aa8.49□□□□□ -1.05
HMGB3-201ENST00000325307 C17orf100A8MU93 164 aa8.49□□□□□ -1.05
HMGB3-201ENST00000325307 F8VVB4 439 aa8.49□□□□□ -1.05
HMGB3-201ENST00000325307 F8VWA3 439 aa8.49□□□□□ -1.05
HMGB3-201ENST00000325307 SOCS1O15524 211 aa8.49□□□□□ -1.05
HMGB3-201ENST00000325307 IGFBP2P18065 325 aa8.49□□□□□ -1.05
HMGB3-201ENST00000325307 GUCA2AQ02747 115 aa8.49□□□□□ -1.05
HMGB3-201ENST00000325307 EXOSC2Q13868 293 aaKnown RBP8.49□□□□□ -1.05
HMGB3-201ENST00000325307 PDCD1Q15116 288 aa8.49□□□□□ -1.05
HMGB3-201ENST00000325307 OR11H4Q8NGC9 324 aa8.49□□□□□ -1.05
HMGB3-201ENST00000325307 OR10R2Q8NGX6 335 aa8.49□□□□□ -1.05
HMGB3-201ENST00000325307 RAB3CQ96E17 227 aa8.49□□□□□ -1.05
HMGB3-201ENST00000325307 FLVCR2Q9UPI3 526 aa8.49□□□□□ -1.05
HMGB3-201ENST00000325307 GAB2Q9UQC2 676 aa8.49□□□□□ -1.05
HMGB3-201ENST00000325307 NPTNQ9Y639 398 aa8.49□□□□□ -1.05
HMGB3-201ENST00000325307 FABP7O15540 132 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 OR7C1O76099 320 aaPredicted RBP8.48□□□□□ -1.05
HMGB3-201ENST00000325307 CHRM2P08172 466 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 MPZP25189 248 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 DUSP1P28562 367 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 CD200P41217 278 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 OLFML2AQ68BL7 652 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 FAM58AQ8N1B3 248 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 C15orf40Q8WUR7 153 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 VRK1Q99986 396 aaPredicted RBP8.48□□□□□ -1.05
HMGB3-201ENST00000325307 CACNG6Q9BXT2 260 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 C20orf85Q9H1P6 137 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 FN3KRPQ9HA64 309 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 A0A0A6YYD4 124 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 A0A0A6YYH2 397 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 A6NJ64 397 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 A6NNC1 897 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 J3QKU1 62 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 RAB27BO00194 218 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 GEMIN2O14893 280 aaKnown RBP8.48□□□□□ -1.05
HMGB3-201ENST00000325307 DHFRP00374 187 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 IFNA7P01567 189 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 GNB3P16520 340 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 CDNFQ49AH0 187 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 MRPS24Q96EL2 167 aaKnown RBP8.48□□□□□ -1.05
HMGB3-201ENST00000325307 Q96M66 194 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 DIRC2Q96SL1 478 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 C7orf50Q9BRJ6 194 aaKnown RBP8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms