RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 OR2V2Q96R30 315 aa13.95□□□□□ -0.18
USP4-201ENST00000265560 PKIBQ9C010 78 aa13.95□□□□□ -0.18
USP4-201ENST00000265560 CXXC4Q9H2H0 198 aa13.95□□□□□ -0.18
USP4-201ENST00000265560 ELOVL5Q9NYP7 299 aa13.95□□□□□ -0.18
USP4-201ENST00000265560 ZNF107Q9UII5 783 aaPredicted RBP13.95□□□□□ -0.18
USP4-201ENST00000265560 SPEF1Q9Y4P9 236 aa13.95□□□□□ -0.18
USP4-201ENST00000265560 ARFGEF3Q5TH69 2177 aa13.95□□□□□ -0.18
USP4-201ENST00000265560 DSCAMO60469 2012 aa13.95□□□□□ -0.18
USP4-201ENST00000265560 OR2H2O95918 312 aa13.95□□□□□ -0.18
USP4-201ENST00000265560 TRAPPC2P0DI81 140 aa13.95□□□□□ -0.18
USP4-201ENST00000265560 TRAPPC2BP0DI82 140 aa13.95□□□□□ -0.18
USP4-201ENST00000265560 PGA5P0DJD9 388 aa13.95□□□□□ -0.18
USP4-201ENST00000265560 SULT1A3P0DMM9 295 aa13.95□□□□□ -0.18
USP4-201ENST00000265560 SULT1A4P0DMN0 295 aa13.95□□□□□ -0.18
USP4-201ENST00000265560 UQCRFS1P47985 274 aa13.95□□□□□ -0.18
USP4-201ENST00000265560 FAM219AQ8IW50 185 aa13.95□□□□□ -0.18
USP4-201ENST00000265560 GPHA2Q96T91 129 aa13.95□□□□□ -0.18
USP4-201ENST00000265560 NRIP2Q9BQI9 281 aa13.95□□□□□ -0.18
USP4-201ENST00000265560 DPCDQ9BVM2 203 aaPredicted RBP13.95□□□□□ -0.18
USP4-201ENST00000265560 C5orf66Q9H5L9 145 aa13.95□□□□□ -0.18
USP4-201ENST00000265560 METRNQ9UJH8 293 aa13.95□□□□□ -0.18
USP4-201ENST00000265560 ATP23Q9Y6H3 246 aa13.95□□□□□ -0.18
USP4-201ENST00000265560 MED13LQ71F56 2210 aa13.94□□□□□ -0.18
USP4-201ENST00000265560 IGHV3OR15-7A0A075B7D8 119 aa13.94□□□□□ -0.18
USP4-201ENST00000265560 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.94□□□□□ -0.18
USP4-201ENST00000265560 GOSR2O14653 212 aa13.94□□□□□ -0.18
USP4-201ENST00000265560 PGAM2P15259 253 aa13.94□□□□□ -0.18
USP4-201ENST00000265560 ADORA2A-AS1P86434 159 aa13.94□□□□□ -0.18
USP4-201ENST00000265560 C11orf88Q6PI97 169 aa13.94□□□□□ -0.18
USP4-201ENST00000265560 TPRX1Q8N7U7 411 aa13.94□□□□□ -0.18
USP4-201ENST00000265560 DEDD2Q8WXF8 326 aa13.94□□□□□ -0.18
USP4-201ENST00000265560 GPN1Q9HCN4 374 aaPredicted RBP13.94□□□□□ -0.18
USP4-201ENST00000265560 NOS1APO75052 506 aaPredicted RBP13.94□□□□□ -0.18
USP4-201ENST00000265560 PTBP3O95758 552 aaKnown RBP13.94□□□□□ -0.18
USP4-201ENST00000265560 ZNF250P15622 560 aa13.94□□□□□ -0.18
USP4-201ENST00000265560 TAS2R46P59540 309 aa13.94□□□□□ -0.18
USP4-201ENST00000265560 ARL6IP1Q15041 203 aa13.94□□□□□ -0.18
USP4-201ENST00000265560 KCTD9Q7L273 389 aa13.94□□□□□ -0.18
USP4-201ENST00000265560 NOXA1Q86UR1 476 aa13.94□□□□□ -0.18
USP4-201ENST00000265560 MOGAT3Q86VF5 341 aa13.94□□□□□ -0.18
USP4-201ENST00000265560 OR11H4Q8NGC9 324 aa13.94□□□□□ -0.18
USP4-201ENST00000265560 SPG11Q96JI7 2443 aa13.94□□□□□ -0.18
USP4-201ENST00000265560 PRAF2O60831 178 aa13.93□□□□□ -0.18
USP4-201ENST00000265560 H2BFSP57053 126 aa13.93□□□□□ -0.18
USP4-201ENST00000265560 CDK10Q15131 360 aa13.93□□□□□ -0.18
USP4-201ENST00000265560 SLC9A3R2Q15599 337 aa13.93□□□□□ -0.18
USP4-201ENST00000265560 PAN3Q58A45 887 aaKnown RBP13.93□□□□□ -0.18
USP4-201ENST00000265560 VAX1Q5SQQ9 334 aa13.93□□□□□ -0.18
USP4-201ENST00000265560 LRRC29Q8WV35 223 aa13.93□□□□□ -0.18
USP4-201ENST00000265560 SLC2A8Q9NY64 477 aa13.93□□□□□ -0.18
USP4-201ENST00000265560 POLDIP2Q9Y2S7 368 aa13.93□□□□□ -0.18
USP4-201ENST00000265560 PSPNO60542 156 aa13.93□□□□□ -0.18
USP4-201ENST00000265560 PLAUP00749 431 aa13.93□□□□□ -0.18
USP4-201ENST00000265560 EGR1P18146 543 aa13.93□□□□□ -0.18
USP4-201ENST00000265560 FCGR2CP31995 323 aa13.93□□□□□ -0.18
USP4-201ENST00000265560 ERVK11-1P61568 191 aa13.93□□□□□ -0.18
USP4-201ENST00000265560 Q6P435 159 aa13.93□□□□□ -0.18
USP4-201ENST00000265560 NLRC3Q7RTR2 1065 aa13.93□□□□□ -0.18
USP4-201ENST00000265560 OR2T35Q8NGX2 323 aa13.93□□□□□ -0.18
USP4-201ENST00000265560 ITLN1Q8WWA0 313 aa13.93□□□□□ -0.18
USP4-201ENST00000265560 IL1F10Q8WWZ1 152 aa13.93□□□□□ -0.18
USP4-201ENST00000265560 DCAF16Q9NXF7 216 aa13.93□□□□□ -0.18
USP4-201ENST00000265560 NOP16Q9Y3C1 178 aaKnown RBP13.93□□□□□ -0.18
USP4-201ENST00000265560 RFPL4AA6NLU0 287 aa13.93□□□□□ -0.18
USP4-201ENST00000265560 RFPL4AL1F8VTS6 287 aa13.93□□□□□ -0.18
USP4-201ENST00000265560 IGHV3-13P01766 116 aa13.93□□□□□ -0.18
USP4-201ENST00000265560 IL13RA1P78552 427 aa13.93□□□□□ -0.18
USP4-201ENST00000265560 CCL8P80075 99 aa13.93□□□□□ -0.18
USP4-201ENST00000265560 PLPPR1Q8TBJ4 325 aa13.93□□□□□ -0.18
USP4-201ENST00000265560 ZNF436Q9C0F3 470 aaPredicted RBP13.93□□□□□ -0.18
USP4-201ENST00000265560 SVEP1Q4LDE5 3571 aa13.92□□□□□ -0.18
USP4-201ENST00000265560 FAM208BQ5VWN6 2430 aa13.92□□□□□ -0.18
USP4-201ENST00000265560 IL5P05113 134 aa13.92□□□□□ -0.18
USP4-201ENST00000265560 ANXA3P12429 323 aa13.92□□□□□ -0.18
USP4-201ENST00000265560 TMEM211Q6ICI0 200 aa13.92□□□□□ -0.18
USP4-201ENST00000265560 ARRDC1Q8N5I2 433 aa13.92□□□□□ -0.18
USP4-201ENST00000265560 SEC22AQ96IW7 307 aa13.92□□□□□ -0.18
USP4-201ENST00000265560 SLC23A1Q9UHI7 598 aa13.92□□□□□ -0.18
USP4-201ENST00000265560 DYSFO75923 2080 aa13.92□□□□□ -0.18
USP4-201ENST00000265560 FAM25EA8MYX2 175 aa13.92□□□□□ -0.18
USP4-201ENST00000265560 OR4A8P0C604 315 aa13.92□□□□□ -0.18
USP4-201ENST00000265560 TBPP20226 339 aa13.92□□□□□ -0.18
USP4-201ENST00000265560 KDF1Q8NAX2 398 aaPredicted RBP13.92□□□□□ -0.18
USP4-201ENST00000265560 ZNF431Q8TF32 576 aaPredicted RBP13.92□□□□□ -0.18
USP4-201ENST00000265560 CA5BP1Q8WTZ4 195 aa13.92□□□□□ -0.18
USP4-201ENST00000265560 RTBDNQ9BSG5 229 aaPredicted RBP13.92□□□□□ -0.18
USP4-201ENST00000265560 RCC2Q9P258 522 aaKnown RBP13.92□□□□□ -0.18
USP4-201ENST00000265560 SLC22A5O76082 557 aa13.91□□□□□ -0.18
USP4-201ENST00000265560 PMELP40967 661 aa13.91□□□□□ -0.18
USP4-201ENST00000265560 MECP2P51608 486 aaKnown RBP13.91□□□□□ -0.18
USP4-201ENST00000265560 MPV17LQ2QL34 196 aa13.91□□□□□ -0.18
USP4-201ENST00000265560 OR2AK2Q8NG84 335 aa13.91□□□□□ -0.18
USP4-201ENST00000265560 TMEM230Q96A57 120 aa13.91□□□□□ -0.18
USP4-201ENST00000265560 PLPPR2Q96GM1 343 aa13.91□□□□□ -0.18
USP4-201ENST00000265560 ZNF286AQ9HBT8 521 aa13.91□□□□□ -0.18
USP4-201ENST00000265560 DLL4Q9NR61 685 aa13.91□□□□□ -0.18
USP4-201ENST00000265560 SLC33A1O00400 549 aaPredicted RBP13.91□□□□□ -0.18
USP4-201ENST00000265560 ZNF81P51508 661 aa13.91□□□□□ -0.18
USP4-201ENST00000265560 FAM53AQ6NSI3 398 aaPredicted RBP13.91□□□□□ -0.18
USP4-201ENST00000265560 TCTE3Q8IZS6 198 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms