RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 EIF4E3Q8N5X7 224 aaKnown RBP16.87■□□□□ 0.29
UPF1-201ENST00000262803 OR5A2Q8NGI9 324 aa16.87■□□□□ 0.29
UPF1-201ENST00000262803 C12orf57Q99622 126 aa16.87■□□□□ 0.29
UPF1-201ENST00000262803 TMPRSS13Q9BYE2 586 aa16.87■□□□□ 0.29
UPF1-201ENST00000262803 OR2J3O76001 311 aa16.87■□□□□ 0.29
UPF1-201ENST00000262803 ACP1P24666 158 aa16.87■□□□□ 0.29
UPF1-201ENST00000262803 ASCL1P50553 236 aa16.87■□□□□ 0.29
UPF1-201ENST00000262803 RPEL1Q2QD12 228 aa16.87■□□□□ 0.29
UPF1-201ENST00000262803 GVQW1Q8N7I0 195 aa16.87■□□□□ 0.29
UPF1-201ENST00000262803 LYRM2Q9NU23 88 aaPredicted RBP16.87■□□□□ 0.29
UPF1-201ENST00000262803 A0A1W2PPV9 198 aa16.86■□□□□ 0.29
UPF1-201ENST00000262803 AREGP15514 252 aa16.86■□□□□ 0.29
UPF1-201ENST00000262803 P2RY1P47900 373 aa16.86■□□□□ 0.29
UPF1-201ENST00000262803 GAB4Q2WGN9 574 aa16.86■□□□□ 0.29
UPF1-201ENST00000262803 OR2C3Q8N628 320 aa16.86■□□□□ 0.29
UPF1-201ENST00000262803 NPAS1Q99742 590 aa16.86■□□□□ 0.29
UPF1-201ENST00000262803 A0A1W2PPC1 479 aa16.86■□□□□ 0.29
UPF1-201ENST00000262803 DUXBA0A1W2PPF3 345 aa16.86■□□□□ 0.29
UPF1-201ENST00000262803 G0S2P27469 103 aa16.86■□□□□ 0.29
UPF1-201ENST00000262803 ID1P41134 155 aa16.86■□□□□ 0.29
UPF1-201ENST00000262803 LSM11P83369 360 aaKnown RBP eCLIP16.86■□□□□ 0.29
UPF1-201ENST00000262803 MESTQ5EB52 335 aa16.86■□□□□ 0.29
UPF1-201ENST00000262803 C1orf185Q5T7R7 199 aa16.86■□□□□ 0.29
UPF1-201ENST00000262803 PDPNQ86YL7 162 aa16.86■□□□□ 0.29
UPF1-201ENST00000262803 FAM219AQ8IW50 185 aa16.86■□□□□ 0.29
UPF1-201ENST00000262803 KCNK15Q9H427 330 aa16.86■□□□□ 0.29
UPF1-201ENST00000262803 TRAPPC1Q9Y5R8 145 aa16.86■□□□□ 0.29
UPF1-201ENST00000262803 TCRBV16S1A1N1A0A5B0 115 aa16.86■□□□□ 0.29
UPF1-201ENST00000262803 CYR61O00622 381 aa16.86■□□□□ 0.29
UPF1-201ENST00000262803 ANKRD55Q3KP44 614 aa16.86■□□□□ 0.29
UPF1-201ENST00000262803 MRGPRDQ8TDS7 321 aa16.86■□□□□ 0.29
UPF1-201ENST00000262803 R3HDM4Q96D70 268 aa16.86■□□□□ 0.29
UPF1-201ENST00000262803 IGHV5-10-1A0A0J9YXX1 117 aa16.86■□□□□ 0.29
UPF1-201ENST00000262803 EIF4EBP2Q13542 120 aaPredicted RBP16.86■□□□□ 0.29
UPF1-201ENST00000262803 PET117Q6UWS5 81 aa16.86■□□□□ 0.29
UPF1-201ENST00000262803 Q8WTZ3 238 aa16.86■□□□□ 0.29
UPF1-201ENST00000262803 NPTNQ9Y639 398 aa16.86■□□□□ 0.29
UPF1-201ENST00000262803 F5H697 171 aa16.85■□□□□ 0.29
UPF1-201ENST00000262803 CLDN34H7C241 214 aa16.85■□□□□ 0.29
UPF1-201ENST00000262803 NGFRP08138 427 aa16.85■□□□□ 0.29
UPF1-201ENST00000262803 HLA-GP17693 338 aa16.85■□□□□ 0.29
UPF1-201ENST00000262803 RPL30P62888 115 aaKnown RBP16.85■□□□□ 0.29
UPF1-201ENST00000262803 OR2H1Q9GZK4 316 aa16.85■□□□□ 0.29
UPF1-201ENST00000262803 GPR35Q9HC97 309 aa16.85■□□□□ 0.29
UPF1-201ENST00000262803 COL4A1P02462 1669 aa16.85■□□□□ 0.29
UPF1-201ENST00000262803 PNRC1Q12796 327 aaPredicted RBP16.85■□□□□ 0.29
UPF1-201ENST00000262803 OR8B12Q8NGG6 310 aa16.85■□□□□ 0.29
UPF1-201ENST00000262803 DDA1Q9BW61 102 aa16.85■□□□□ 0.29
UPF1-201ENST00000262803 SEC11CQ9BY50 192 aa16.85■□□□□ 0.29
UPF1-201ENST00000262803 NARFLQ9H6Q4 476 aa16.85■□□□□ 0.29
UPF1-201ENST00000262803 SLC52A3Q9NQ40 469 aa16.85■□□□□ 0.29
UPF1-201ENST00000262803 FRRS1LQ9P0K9 344 aa16.85■□□□□ 0.29
UPF1-201ENST00000262803 HMSDA8MTL9 139 aa16.85■□□□□ 0.29
UPF1-201ENST00000262803 SELENOPP49908 381 aa16.85■□□□□ 0.29
UPF1-201ENST00000262803 ZAR1Q86SH2 424 aa16.85■□□□□ 0.29
UPF1-201ENST00000262803 DCAF10Q5QP82 559 aa16.85■□□□□ 0.29
UPF1-201ENST00000262803 DHRS7BQ6IAN0 325 aaPredicted RBP16.85■□□□□ 0.29
UPF1-201ENST00000262803 ZNF426Q9BUY5 554 aa16.85■□□□□ 0.29
UPF1-201ENST00000262803 ZNF71Q9NQZ8 489 aaPredicted RBP16.85■□□□□ 0.29
UPF1-201ENST00000262803 COA4Q9NYJ1 87 aa16.85■□□□□ 0.29
UPF1-201ENST00000262803 ZNF528Q3MIS6 628 aa16.84■□□□□ 0.29
UPF1-201ENST00000262803 FBXW9Q5XUX1 488 aa16.84■□□□□ 0.29
UPF1-201ENST00000262803 SPINK14Q6IE38 97 aa16.84■□□□□ 0.29
UPF1-201ENST00000262803 TGIF2LYQ8IUE0 185 aa16.84■□□□□ 0.29
UPF1-201ENST00000262803 TGIF2LXQ8IUE1 241 aa16.84■□□□□ 0.29
UPF1-201ENST00000262803 UBTD1Q9HAC8 227 aa16.84■□□□□ 0.29
UPF1-201ENST00000262803 SLC7A10Q9NS82 523 aa16.84■□□□□ 0.29
UPF1-201ENST00000262803 RP1P56715 2156 aa16.84■□□□□ 0.29
UPF1-201ENST00000262803 GNG7O60262 68 aa16.84■□□□□ 0.29
UPF1-201ENST00000262803 HIST1H1EP10412 219 aaKnown RBP16.84■□□□□ 0.29
UPF1-201ENST00000262803 LIFP15018 202 aa16.84■□□□□ 0.29
UPF1-201ENST00000262803 SRSF5Q13243 272 aaKnown RBP16.84■□□□□ 0.29
UPF1-201ENST00000262803 SIGIRRQ6IA17 410 aa16.84■□□□□ 0.29
UPF1-201ENST00000262803 RPS4Y2Q8TD47 263 aa16.84■□□□□ 0.29
UPF1-201ENST00000262803 MMP24Q9Y5R2 645 aa16.84■□□□□ 0.29
UPF1-201ENST00000262803 WSB1Q9Y6I7 421 aa16.84■□□□□ 0.29
UPF1-201ENST00000262803 IFI6P09912 130 aa16.84■□□□□ 0.29
UPF1-201ENST00000262803 OR5C1Q8NGR4 320 aa16.84■□□□□ 0.29
UPF1-201ENST00000262803 ADAMTSL1Q8N6G6 1762 aa16.84■□□□□ 0.29
UPF1-201ENST00000262803 ZXDAP98168 799 aa16.84■□□□□ 0.29
UPF1-201ENST00000262803 PLPPR2Q96GM1 343 aa16.84■□□□□ 0.29
UPF1-201ENST00000262803 TPRP12270 2363 aaKnown RBP16.83■□□□□ 0.29
UPF1-201ENST00000262803 SIAH2O43255 324 aa16.83■□□□□ 0.29
UPF1-201ENST00000262803 HOXB1P14653 301 aaPredicted RBP16.83■□□□□ 0.29
UPF1-201ENST00000262803 IZUMO4Q1ZYL8 232 aa16.83■□□□□ 0.29
UPF1-201ENST00000262803 OR4D10Q8NGI6 311 aa16.83■□□□□ 0.29
UPF1-201ENST00000262803 PLA2G10O15496 165 aa16.83■□□□□ 0.29
UPF1-201ENST00000262803 DGAT2L7PQ6IED9 249 aa16.83■□□□□ 0.29
UPF1-201ENST00000262803 SLC26A10Q8NG04 563 aa16.83■□□□□ 0.29
UPF1-201ENST00000262803 OR10G4Q8NGN3 311 aa16.83■□□□□ 0.29
UPF1-201ENST00000262803 OR10G9Q8NGN4 311 aa16.83■□□□□ 0.29
UPF1-201ENST00000262803 OR10G7Q8NGN6 311 aa16.83■□□□□ 0.29
UPF1-201ENST00000262803 MAGEA5P43359 124 aa16.83■□□□□ 0.28
UPF1-201ENST00000262803 KIR2DL1P43626 348 aaPredicted RBP16.83■□□□□ 0.28
UPF1-201ENST00000262803 LYZP61626 148 aa16.83■□□□□ 0.28
UPF1-201ENST00000262803 P2RY6Q15077 328 aa16.83■□□□□ 0.28
UPF1-201ENST00000262803 SSX7Q7RTT5 188 aa16.83■□□□□ 0.28
UPF1-201ENST00000262803 TUSC5Q8IXB3 177 aa16.83■□□□□ 0.28
UPF1-201ENST00000262803 TMEM38BQ9NVV0 291 aa16.83■□□□□ 0.28
UPF1-201ENST00000262803 ANXA10Q9UJ72 324 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms