RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 HIST1H2BOP23527 126 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 OTX1P32242 354 aaPredicted RBP4.15□□□□□ -1.75
SCN1A-220ENST00000641603 HIST1H2BBP33778 126 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 MPLP40238 635 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 HIST1H2BDP58876 126 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 RPS23P62266 143 aaKnown RBP4.15□□□□□ -1.75
SCN1A-220ENST00000641603 HIST1H2BCP62807 126 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 HIST2H2BEQ16778 126 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.15□□□□□ -1.75
SCN1A-220ENST00000641603 ANKRD34AQ69YU3 496 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 HEPN1Q6WQI6 88 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 OR5AS1Q8N127 324 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 C17orf47Q8NEP4 570 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 ZDHHC19Q8WVZ1 309 aaPredicted RBP4.15□□□□□ -1.75
SCN1A-220ENST00000641603 HIST1H2BHQ93079 126 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 HIST1H2BNQ99877 126 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 HIST1H2BMQ99879 126 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 REG4Q9BYZ8 158 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 CLN8Q9UBY8 286 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 ADAMTSL3P82987 1691 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 HOXC4P09017 264 aaPredicted RBP4.15□□□□□ -1.75
SCN1A-220ENST00000641603 ERGP11308 486 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 FCER1GP30273 86 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 FBLN7Q53RD9 439 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 PQLC2Q6ZP29 291 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 CPEB2Q7Z5Q1 589 aaKnown RBP4.15□□□□□ -1.75
SCN1A-220ENST00000641603 OR9G4Q8NGQ1 327 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 MS4A6AQ9H2W1 248 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 LINC01549A6NIU2 74 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 LEPROTL1O95214 131 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 ATP6V0CP27449 155 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 CASP6P55212 293 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 SMAGPQ0VAQ4 97 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 DOLPP1Q86YN1 238 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 CA13Q8N1Q1 262 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 HIST3H2BBQ8N257 126 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 OR5D13Q8NGL4 314 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 SGMS2Q8NHU3 365 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 S1PR3Q99500 378 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 TMEM222Q9H0R3 208 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 HDGFL3Q9Y3E1 203 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 A0A1B0GUL6 1792 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 TRBV5-7A0A0A0MS05 114 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 ZNF860A6NHJ4 632 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 CD1BP29016 333 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 TMPRSS3P57727 454 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 CD226Q15762 336 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 Q1RN00 199 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 ZNF766Q5HY98 468 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 LAIR1Q6GTX8 287 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 APCDD1LQ8NCL9 501 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 OR5D18Q8NGL1 313 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 OXGR1Q96P68 337 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 SLCO1C1Q9NYB5 712 aa4.15□□□□□ -1.75
SCN1A-220ENST00000641603 A8MWL6 223 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 ZFAND5O76080 213 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 ACTL6AO96019 429 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 ZNF141Q15928 474 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 RAET1LQ5VY80 246 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 RASL11AQ6T310 242 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 SLC36A1Q7Z2H8 476 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 FAM169BQ8N8A8 192 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 AQP3Q92482 292 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 WDYHV1Q96HA8 205 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 PARLQ9H300 379 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 NHSQ6T4R5 1651 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 UBE2L5PA0A1B0GUS4 154 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 GALR2O43603 387 aaPredicted RBP4.14□□□□□ -1.75
SCN1A-220ENST00000641603 SNAI3Q3KNW1 292 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 METRNLQ641Q3 311 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 Q6AWC8 147 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 KCNS1Q96KK3 526 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 TSPAN32Q96QS1 320 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 G3V3Y1 287 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 LPAR6P43657 344 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 GUCA2AQ02747 115 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 HES1Q14469 280 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 CD99L2Q8TCZ2 262 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 ADAT3Q96EY9 351 aaPredicted RBP4.14□□□□□ -1.75
SCN1A-220ENST00000641603 HIST1H2BLQ99880 126 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 COA3Q9Y2R0 106 aaPredicted RBP4.14□□□□□ -1.75
SCN1A-220ENST00000641603 KLF7O75840 302 aaPredicted RBP4.14□□□□□ -1.75
SCN1A-220ENST00000641603 ISG15P05161 165 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 ROM1Q03395 351 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 UBE2V1Q13404 147 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 GABRA6Q16445 453 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 WDR38Q5JTN6 314 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 OR11L1Q8NGX0 322 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 OR10AG1Q8NH19 301 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 OR51E1Q8TCB6 317 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 PECRQ9BY49 303 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 SLC6A13Q9NSD5 602 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 RBPJLQ9UBG7 517 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 ST3GAL6Q9Y274 331 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 DLEC1Q9Y238 1755 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 OR2T8A6NH00 312 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 OTOL1A6NHN0 477 aaPredicted RBP4.14□□□□□ -1.75
SCN1A-220ENST00000641603 ZNF732B4DXR9 585 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 CST7O76096 145 aa4.14□□□□□ -1.75
SCN1A-220ENST00000641603 CTSOP43234 321 aaPredicted RBP4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms