RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 ATP6V0CP27449 155 aa5.07□□□□□ -1.6
SCN1A-216ENST00000637968 SLC6A12P48065 614 aa5.07□□□□□ -1.6
SCN1A-216ENST00000637968 RHOGP84095 191 aa5.07□□□□□ -1.6
SCN1A-216ENST00000637968 PDE7AQ13946 482 aa5.07□□□□□ -1.6
SCN1A-216ENST00000637968 ICAM4Q14773 271 aa5.07□□□□□ -1.6
SCN1A-216ENST00000637968 C9orf57Q5W0N0 161 aa5.07□□□□□ -1.6
SCN1A-216ENST00000637968 CALHM1Q8IU99 346 aa5.07□□□□□ -1.6
SCN1A-216ENST00000637968 TMEM256Q8N2U0 113 aa5.07□□□□□ -1.6
SCN1A-216ENST00000637968 PAQR4Q8N4S7 273 aaPredicted RBP5.07□□□□□ -1.6
SCN1A-216ENST00000637968 OR4F5Q8NH21 305 aa5.07□□□□□ -1.6
SCN1A-216ENST00000637968 LYPD6BQ8NI32 183 aa5.07□□□□□ -1.6
SCN1A-216ENST00000637968 WDYHV1Q96HA8 205 aa5.07□□□□□ -1.6
SCN1A-216ENST00000637968 OR4F4Q96R69 305 aa5.07□□□□□ -1.6
SCN1A-216ENST00000637968 GPA33Q99795 319 aa5.07□□□□□ -1.6
SCN1A-216ENST00000637968 SGIP1Q9BQI5 828 aa5.07□□□□□ -1.6
SCN1A-216ENST00000637968 LMF2Q9BU23 707 aaKnown RBP5.07□□□□□ -1.6
SCN1A-216ENST00000637968 ABHD14AQ9BUJ0 271 aa5.07□□□□□ -1.6
SCN1A-216ENST00000637968 PECRQ9BY49 303 aa5.07□□□□□ -1.6
SCN1A-216ENST00000637968 GPR84Q9NQS5 396 aa5.07□□□□□ -1.6
SCN1A-216ENST00000637968 HS3ST4Q9Y661 456 aa5.07□□□□□ -1.6
SCN1A-216ENST00000637968 COL2A1P02458 1487 aaPredicted RBP5.07□□□□□ -1.6
SCN1A-216ENST00000637968 NUP205Q92621 2012 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 PPIAL4CA0A0B4J2A2 164 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 PPIAL4GP0DN37 164 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 ADRA2CP18825 462 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 AOAHP28039 575 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 OTX2P32243 289 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 PSG9Q00887 426 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 GAGE5Q13069 117 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 GAGE6Q13070 117 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 PRDX4Q13162 271 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 TDRG1Q3Y452 100 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 CD300EQ496F6 205 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-216ENST00000637968 CCDC144NLQ6NUI1 221 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 ZNF550Q7Z398 422 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 CDC20BQ86Y33 519 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 UMODL1-AS1Q8N2C9 162 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 POC1AQ8NBT0 407 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 PLPP7Q8NBV4 271 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 RSPO3Q9BXY4 272 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-216ENST00000637968 WNT10AQ9GZT5 417 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 FNDC4Q9H6D8 234 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-216ENST00000637968 PRSS16Q9NQE7 514 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 MRPL16Q9NX20 251 aaKnown RBP5.06□□□□□ -1.6
SCN1A-216ENST00000637968 CISD1Q9NZ45 108 aaKnown RBP5.06□□□□□ -1.6
SCN1A-216ENST00000637968 G3V3Y1 287 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 CD5LO43866 347 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 CD33P20138 364 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 ALOX5APP20292 161 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 CYB561P49447 251 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 CSRP2Q16527 193 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 ACKR1Q16570 336 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 TCTEX1D4Q5JR98 221 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 ASTLQ6HA08 431 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-216ENST00000637968 UNQ9370/PRO34162Q6UXP9 181 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 MRGPRGQ86SM5 289 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 C9orf40Q8IXQ3 194 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 KREMEN2Q8NCW0 462 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 OR2Z1Q8NG97 314 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 OR10G4Q8NGN3 311 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 OR2K2Q8NGT1 345 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 TMEM255BQ8WV15 326 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 LHX4Q969G2 390 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 SH3BGRL3Q9H299 93 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 DEC1Q9P2X7 70 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 SMPXQ9UHP9 88 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 GAGE12HA6NDE8 117 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 ANKRD66B4E2M5 251 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 SLC31A1O15431 190 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 RENP00797 406 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 OPRM1P35372 400 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 RPS15P62841 145 aaKnown RBP5.06□□□□□ -1.6
SCN1A-216ENST00000637968 PLAURQ03405 335 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 CCSMST1Q4G0I0 132 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 Q56UQ5 140 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 AGTRAPQ6RW13 159 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 ATOH7Q8N100 152 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 BATF2Q8N1L9 274 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 CACNG8Q8WXS5 425 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 TMEM45BQ96B21 275 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 DCBLD2Q96PD2 775 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 TSSK2Q96PF2 358 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 ST6GALNAC5Q9BVH7 336 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 ZNF703Q9H7S9 590 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-216ENST00000637968 PRR13Q9NZ81 148 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 B3GALT1Q9Y5Z6 326 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 DDX60LQ5H9U9 1706 aaKnown RBP5.06□□□□□ -1.6
SCN1A-216ENST00000637968 C2orf72A6NCS6 295 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 OR11H12B2RN74 326 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 SERF1AO75920 110 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 NDUFB2O95178 105 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 HOXB2P14652 356 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 ZNF708P17019 499 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 CEBPBP17676 345 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 EFNB2P52799 333 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 PDX1P52945 283 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 TRMT12Q53H54 448 aaKnown RBP5.06□□□□□ -1.6
SCN1A-216ENST00000637968 TMEM164Q5U3C3 297 aa5.06□□□□□ -1.6
SCN1A-216ENST00000637968 MRPL54Q6P161 138 aaKnown RBP5.06□□□□□ -1.6
SCN1A-216ENST00000637968 GDF7Q7Z4P5 450 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms