RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 CEBPDP49716 269 aaPredicted RBP15.75■□□□□ 0.11
CLN3-260ENST00000637578 DLX1P56177 255 aa15.75■□□□□ 0.11
CLN3-260ENST00000637578 FAM27D1Q5T7N8 215 aa15.75■□□□□ 0.11
CLN3-260ENST00000637578 UNQ9370/PRO34162Q6UXP9 181 aa15.75■□□□□ 0.11
CLN3-260ENST00000637578 SPACA5Q96QH8 159 aa15.75■□□□□ 0.11
CLN3-260ENST00000637578 CCRL2O00421 344 aa15.75■□□□□ 0.11
CLN3-260ENST00000637578 ALX3O95076 343 aa15.75■□□□□ 0.11
CLN3-260ENST00000637578 SMIM18P0DKX4 95 aa15.75■□□□□ 0.11
CLN3-260ENST00000637578 FSTP19883 344 aa15.75■□□□□ 0.11
CLN3-260ENST00000637578 PSMA1P25786 263 aaKnown RBP15.75■□□□□ 0.11
CLN3-260ENST00000637578 IER3P46695 156 aa15.75■□□□□ 0.11
CLN3-260ENST00000637578 RBP2P50120 134 aa15.75■□□□□ 0.11
CLN3-260ENST00000637578 UBE2E1P51965 193 aa15.75■□□□□ 0.11
CLN3-260ENST00000637578 GP2P55259 537 aaKnown RBP15.75■□□□□ 0.11
CLN3-260ENST00000637578 PPP3R1P63098 170 aa15.75■□□□□ 0.11
CLN3-260ENST00000637578 SYT6Q5T7P8 510 aaPredicted RBP15.75■□□□□ 0.11
CLN3-260ENST00000637578 NCR3LG1Q68D85 454 aa15.75■□□□□ 0.11
CLN3-260ENST00000637578 TMEM91Q6ZNR0 172 aa15.75■□□□□ 0.11
CLN3-260ENST00000637578 SLC25A26Q70HW3 274 aa15.75■□□□□ 0.11
CLN3-260ENST00000637578 RNF144BQ7Z419 303 aa15.75■□□□□ 0.11
CLN3-260ENST00000637578 BATF2Q8N1L9 274 aa15.75■□□□□ 0.11
CLN3-260ENST00000637578 C11orf42Q8N5U0 333 aa15.75■□□□□ 0.11
CLN3-260ENST00000637578 THRSPQ92748 146 aa15.75■□□□□ 0.11
CLN3-260ENST00000637578 ZNF747Q9BV97 191 aa15.75■□□□□ 0.11
CLN3-260ENST00000637578 CHIAQ9BZP6 476 aa15.75■□□□□ 0.11
CLN3-260ENST00000637578 K7N7A8 449 aa15.74■□□□□ 0.11
CLN3-260ENST00000637578 NPFFO15130 113 aa15.74■□□□□ 0.11
CLN3-260ENST00000637578 ZNF737O75373 536 aa15.74■□□□□ 0.11
CLN3-260ENST00000637578 TK1P04183 234 aa15.74■□□□□ 0.11
CLN3-260ENST00000637578 IGFBP3P17936 291 aaPredicted RBP15.74■□□□□ 0.11
CLN3-260ENST00000637578 TGFBR2P37173 567 aa15.74■□□□□ 0.11
CLN3-260ENST00000637578 CAPZA1P52907 286 aa15.74■□□□□ 0.11
CLN3-260ENST00000637578 ATP1B3P54709 279 aa15.74■□□□□ 0.11
CLN3-260ENST00000637578 MTCP1P56278 107 aa15.74■□□□□ 0.11
CLN3-260ENST00000637578 RPL31P62899 125 aaKnown RBP15.74■□□□□ 0.11
CLN3-260ENST00000637578 FABP5Q01469 135 aa15.74■□□□□ 0.11
CLN3-260ENST00000637578 PRB3Q04118 309 aaPredicted RBP15.74■□□□□ 0.11
CLN3-260ENST00000637578 BLMHQ13867 455 aa15.74■□□□□ 0.11
CLN3-260ENST00000637578 TRAM1Q15629 374 aa15.74■□□□□ 0.11
CLN3-260ENST00000637578 TMEM200BQ69YZ2 307 aa15.74■□□□□ 0.11
CLN3-260ENST00000637578 HCP5Q6MZN7 132 aa15.74■□□□□ 0.11
CLN3-260ENST00000637578 LHFPL2Q6ZUX7 228 aa15.74■□□□□ 0.11
CLN3-260ENST00000637578 CEACAM19Q7Z692 300 aa15.74■□□□□ 0.11
CLN3-260ENST00000637578 OR5D13Q8NGL4 314 aa15.74■□□□□ 0.11
CLN3-260ENST00000637578 TBC1D15Q8TC07 691 aa15.74■□□□□ 0.11
CLN3-260ENST00000637578 VCX3AQ9NNX9 186 aa15.74■□□□□ 0.11
CLN3-260ENST00000637578 CKLFQ9UBR5 152 aa15.74■□□□□ 0.11
CLN3-260ENST00000637578 OR14J1Q9UGF5 321 aa15.74■□□□□ 0.11
CLN3-260ENST00000637578 MAGEA13PA6NCF6 341 aa15.73■□□□□ 0.11
CLN3-260ENST00000637578 FAM181BA6NEQ2 426 aa15.73■□□□□ 0.11
CLN3-260ENST00000637578 GPX5O75715 221 aa15.73■□□□□ 0.11
CLN3-260ENST00000637578 CHRM2P08172 466 aa15.73■□□□□ 0.11
CLN3-260ENST00000637578 HCKP08631 526 aa15.73■□□□□ 0.11
CLN3-260ENST00000637578 KLRD1Q13241 179 aa15.73■□□□□ 0.11
CLN3-260ENST00000637578 CRIP3Q6Q6R5 217 aa15.73■□□□□ 0.11
CLN3-260ENST00000637578 Q8IYB0 196 aa15.73■□□□□ 0.11
CLN3-260ENST00000637578 TAF15Q92804 592 aaKnown RBP eCLIP15.73■□□□□ 0.11
CLN3-260ENST00000637578 SLAMF9Q96A28 289 aa15.73■□□□□ 0.11
CLN3-260ENST00000637578 RFT1Q96AA3 541 aa15.73■□□□□ 0.11
CLN3-260ENST00000637578 PPIL3Q9H2H8 161 aaKnown RBP15.73■□□□□ 0.11
CLN3-260ENST00000637578 NEK6Q9HC98 313 aa15.73■□□□□ 0.11
CLN3-260ENST00000637578 GABRPO00591 440 aa15.72■□□□□ 0.11
CLN3-260ENST00000637578 UCHL1P09936 223 aa15.72■□□□□ 0.11
CLN3-260ENST00000637578 RPL15P61313 204 aaKnown RBP15.72■□□□□ 0.11
CLN3-260ENST00000637578 COL10A1Q03692 680 aa15.72■□□□□ 0.11
CLN3-260ENST00000637578 FIP1L1Q6UN15 594 aaKnown RBP15.72■□□□□ 0.11
CLN3-260ENST00000637578 MKXQ8IYA7 352 aa15.72■□□□□ 0.11
CLN3-260ENST00000637578 FAM185AQ8N0U4 392 aa15.72■□□□□ 0.11
CLN3-260ENST00000637578 OR52N4Q8NGI2 321 aa15.72■□□□□ 0.11
CLN3-260ENST00000637578 TMEM138Q9NPI0 162 aa15.72■□□□□ 0.11
CLN3-260ENST00000637578 FOXJ3Q9UPW0 622 aa15.72■□□□□ 0.11
CLN3-260ENST00000637578 FAM96BQ9Y3D0 163 aa15.72■□□□□ 0.11
CLN3-260ENST00000637578 MMP24Q9Y5R2 645 aa15.72■□□□□ 0.11
CLN3-260ENST00000637578 POM121CA8CG34 1229 aa15.71■□□□□ 0.11
CLN3-260ENST00000637578 IGHV4-59P01825 116 aa15.71■□□□□ 0.11
CLN3-260ENST00000637578 POU3F4P49335 361 aa15.71■□□□□ 0.11
CLN3-260ENST00000637578 PDZK1IP1Q13113 114 aa15.71■□□□□ 0.11
CLN3-260ENST00000637578 KISS1Q15726 138 aa15.71■□□□□ 0.11
CLN3-260ENST00000637578 CD200R1LQ6Q8B3 271 aa15.71■□□□□ 0.11
CLN3-260ENST00000637578 OR5D18Q8NGL1 313 aa15.71■□□□□ 0.11
CLN3-260ENST00000637578 DYRK2Q92630 601 aa15.71■□□□□ 0.11
CLN3-260ENST00000637578 NKX3-1Q99801 234 aaPredicted RBP15.71■□□□□ 0.11
CLN3-260ENST00000637578 ZNRD1Q9P1U0 126 aa15.71■□□□□ 0.11
CLN3-260ENST00000637578 A0A1W2PPH5 198 aa15.7■□□□□ 0.1
CLN3-260ENST00000637578 MAGEB3O15480 346 aa15.7■□□□□ 0.1
CLN3-260ENST00000637578 MAS1P04201 325 aa15.7■□□□□ 0.1
CLN3-260ENST00000637578 FBP1P09467 338 aa15.7■□□□□ 0.1
CLN3-260ENST00000637578 JUNBP17275 347 aaPredicted RBP15.7■□□□□ 0.1
CLN3-260ENST00000637578 BDKRB2P30411 391 aa15.7■□□□□ 0.1
CLN3-260ENST00000637578 SAA4P35542 130 aa15.7■□□□□ 0.1
CLN3-260ENST00000637578 NPBWR2P48146 333 aa15.7■□□□□ 0.1
CLN3-260ENST00000637578 HSD17B12Q53GQ0 312 aa15.7■□□□□ 0.1
CLN3-260ENST00000637578 DDI2Q5TDH0 399 aa15.7■□□□□ 0.1
CLN3-260ENST00000637578 PNKDQ8N490 385 aa15.7■□□□□ 0.1
CLN3-260ENST00000637578 OR4M1Q8NGD0 313 aa15.7■□□□□ 0.1
CLN3-260ENST00000637578 AJUBAQ96IF1 538 aa15.7■□□□□ 0.1
CLN3-260ENST00000637578 DPAGT1Q9H3H5 408 aa15.7■□□□□ 0.1
CLN3-260ENST00000637578 TNFRSF19Q9NS68 423 aa15.7■□□□□ 0.1
CLN3-260ENST00000637578 C1RLQ9NZP8 487 aa15.7■□□□□ 0.1
CLN3-260ENST00000637578 SPRY1O43609 319 aaPredicted RBP15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms