RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 PLP2Q04941 152 aa9.13□□□□□ -0.95
CUX1-221ENST00000622516 PIP4P1Q86T03 277 aa9.13□□□□□ -0.95
CUX1-221ENST00000622516 MDP1Q86V88 176 aa9.13□□□□□ -0.95
CUX1-221ENST00000622516 C17orf78Q8N4C9 275 aa9.13□□□□□ -0.95
CUX1-221ENST00000622516 INO80EQ8NBZ0 244 aaPredicted RBP9.13□□□□□ -0.95
CUX1-221ENST00000622516 RNF126Q9BV68 326 aa9.13□□□□□ -0.95
CUX1-221ENST00000622516 MTCH1Q9NZJ7 389 aa9.13□□□□□ -0.95
CUX1-221ENST00000622516 C14orf166Q9Y224 244 aaKnown RBP9.13□□□□□ -0.95
CUX1-221ENST00000622516 AUP1Q9Y679 476 aa9.13□□□□□ -0.95
CUX1-221ENST00000622516 MSGN1A6NI15 193 aa9.13□□□□□ -0.95
CUX1-221ENST00000622516 RBM11P57052 281 aaKnown RBP9.13□□□□□ -0.95
CUX1-221ENST00000622516 ERVS71-1P61550 626 aa9.13□□□□□ -0.95
CUX1-221ENST00000622516 MALLQ13021 153 aa9.13□□□□□ -0.95
CUX1-221ENST00000622516 C21orf62-AS1Q17RA5 79 aa9.13□□□□□ -0.95
CUX1-221ENST00000622516 HAGHLQ6PII5 290 aaPredicted RBP9.13□□□□□ -0.95
CUX1-221ENST00000622516 C16orf54Q6UWD8 224 aa9.13□□□□□ -0.95
CUX1-221ENST00000622516 ASCL4Q6XD76 172 aa9.13□□□□□ -0.95
CUX1-221ENST00000622516 ACOT7LQ6ZUV0 252 aa9.13□□□□□ -0.95
CUX1-221ENST00000622516 KCNRGQ8N5I3 272 aa9.13□□□□□ -0.95
CUX1-221ENST00000622516 OR5T2Q8NGG2 359 aa9.13□□□□□ -0.95
CUX1-221ENST00000622516 OR11L1Q8NGX0 322 aa9.13□□□□□ -0.95
CUX1-221ENST00000622516 APOBEC3DQ96AK3 386 aaPredicted RBP9.13□□□□□ -0.95
CUX1-221ENST00000622516 SDHAF2Q9NX18 166 aa9.13□□□□□ -0.95
CUX1-221ENST00000622516 ZNF391Q9UJN7 358 aa9.13□□□□□ -0.95
CUX1-221ENST00000622516 HEATR1Q9H583 2144 aaKnown RBP9.13□□□□□ -0.95
CUX1-221ENST00000622516 A0A0B4J2A0 478 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 CEACAM18A8MTB9 384 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 TOR1AO14656 332 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 ACTL6AO96019 429 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 SELEP16581 610 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 CA6P23280 308 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 PIGPP57054 158 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 SRSF4Q08170 494 aaKnown RBP9.12□□□□□ -0.95
CUX1-221ENST00000622516 RAB32Q13637 225 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 FBXW9Q5XUX1 488 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 RGS7BPQ6MZT1 257 aaPredicted RBP9.12□□□□□ -0.95
CUX1-221ENST00000622516 TMEM65Q6PI78 240 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 P4HA3Q7Z4N8 544 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 CNEP1R1Q8N9A8 125 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 CPNE2Q96FN4 548 aaPredicted RBP9.12□□□□□ -0.95
CUX1-221ENST00000622516 TRIB1Q96RU8 372 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 SHPKQ9UHJ6 478 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 APC2O95996 2303 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 PCNX1Q96RV3 2341 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 CD300LBA8K4G0 201 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 DEFB109BQ30KR1 87 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 NRN1LQ496H8 165 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 CCDC36Q8IYA8 594 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 ZDHHC23Q8IYP9 409 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 TMEM178AQ8NBL3 297 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 OR1S1Q8NH92 325 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 RBPMSQ93062 196 aaKnown RBP9.12□□□□□ -0.95
CUX1-221ENST00000622516 SCGB3A2Q96PL1 93 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 ASCL3Q9NQ33 180 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 HSF4Q9ULV5 492 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 A0A0D9SG52 128 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 hCG_1807616A0A1W2PRN6 198 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 PQLC2LA1A4F0 135 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 CDRT15L2A8MXV6 281 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 HS3ST1O14792 307 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 PDCD6O75340 191 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 SLC25A4P12235 298 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 APLNRP35414 380 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 HOXA4Q00056 320 aaPredicted RBP9.12□□□□□ -0.95
CUX1-221ENST00000622516 ARL6IP1Q15041 203 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 PXT1Q8NFP0 134 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 OR5L1Q8NGL2 311 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 OR1K1Q8NGR3 316 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 NEK7Q8TDX7 302 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 LINC00052Q96N35 136 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 REG4Q9BYZ8 158 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 NECAP2Q9NVZ3 263 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 KIF25Q9UIL4 384 aa9.12□□□□□ -0.95
CUX1-221ENST00000622516 ROS1P08922 2347 aa9.11□□□□□ -0.95
CUX1-221ENST00000622516 RHBDL1O75783 438 aa9.11□□□□□ -0.95
CUX1-221ENST00000622516 IFNA2P01563 188 aa9.11□□□□□ -0.95
CUX1-221ENST00000622516 FUT3P21217 361 aa9.11□□□□□ -0.95
CUX1-221ENST00000622516 ARR3P36575 388 aa9.11□□□□□ -0.95
CUX1-221ENST00000622516 IDH3GP51553 393 aaPredicted RBP9.11□□□□□ -0.95
CUX1-221ENST00000622516 IKZF1Q13422 519 aa9.11□□□□□ -0.95
CUX1-221ENST00000622516 ELP2Q6IA86 826 aa9.11□□□□□ -0.95
CUX1-221ENST00000622516 CLEC9AQ6UXN8 241 aa9.11□□□□□ -0.95
CUX1-221ENST00000622516 SLC30A7Q8NEW0 376 aa9.11□□□□□ -0.95
CUX1-221ENST00000622516 ASB13Q8WXK3 278 aa9.11□□□□□ -0.95
CUX1-221ENST00000622516 ZDHHC11Q9H8X9 412 aa9.11□□□□□ -0.95
CUX1-221ENST00000622516 OR2S2Q9NQN1 319 aa9.11□□□□□ -0.95
CUX1-221ENST00000622516 ZNF175Q9Y473 711 aa9.11□□□□□ -0.95
CUX1-221ENST00000622516 BCL2L11O43521 198 aa9.11□□□□□ -0.95
CUX1-221ENST00000622516 OR2F2O95006 317 aa9.11□□□□□ -0.95
CUX1-221ENST00000622516 SCGB1D2O95969 90 aa9.11□□□□□ -0.95
CUX1-221ENST00000622516 OR2F1Q13607 317 aa9.11□□□□□ -0.95
CUX1-221ENST00000622516 RBM39Q14498 530 aaKnown RBP9.11□□□□□ -0.95
CUX1-221ENST00000622516 CEACAM21Q3KPI0 293 aa9.11□□□□□ -0.95
CUX1-221ENST00000622516 ALKBH6Q3KRA9 238 aa9.11□□□□□ -0.95
CUX1-221ENST00000622516 BCL2L2Q92843 193 aaPredicted RBP9.11□□□□□ -0.95
CUX1-221ENST00000622516 EXTL1Q92935 676 aa9.11□□□□□ -0.95
CUX1-221ENST00000622516 MRPL24Q96A35 216 aaKnown RBP9.11□□□□□ -0.95
CUX1-221ENST00000622516 KCNMB2Q9Y691 235 aa9.11□□□□□ -0.95
CUX1-221ENST00000622516 TRAV39A0A0B4J263 110 aa9.1□□□□□ -0.95
CUX1-221ENST00000622516 PRSS44E7EML9 344 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms