RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 SLC25A24Q6NUK1 477 aa15.94■□□□□ 0.14
UPF1-210ENST00000600689 OR2C3Q8N628 320 aa15.94■□□□□ 0.14
UPF1-210ENST00000600689 COMMD1Q8N668 190 aa15.94■□□□□ 0.14
UPF1-210ENST00000600689 TMEM171Q8WVE6 324 aa15.94■□□□□ 0.14
UPF1-210ENST00000600689 HAS2Q92819 552 aa15.94■□□□□ 0.14
UPF1-210ENST00000600689 NAT6Q93015 286 aa15.94■□□□□ 0.14
UPF1-210ENST00000600689 POM121Q96HA1 1249 aa15.94■□□□□ 0.14
UPF1-210ENST00000600689 NECAP2Q9NVZ3 263 aa15.94■□□□□ 0.14
UPF1-210ENST00000600689 GNG13Q9P2W3 67 aa15.94■□□□□ 0.14
UPF1-210ENST00000600689 HSF4Q9ULV5 492 aa15.94■□□□□ 0.14
UPF1-210ENST00000600689 HLA-HP01893 362 aa15.94■□□□□ 0.14
UPF1-210ENST00000600689 TRGC1P0CF51 173 aa15.94■□□□□ 0.14
UPF1-210ENST00000600689 MMP9P14780 707 aa15.94■□□□□ 0.14
UPF1-210ENST00000600689 TUBG1P23258 451 aa15.94■□□□□ 0.14
UPF1-210ENST00000600689 ZNF880Q6PDB4 577 aa15.94■□□□□ 0.14
UPF1-210ENST00000600689 LIAT1Q6ZQX7 453 aa15.94■□□□□ 0.14
UPF1-210ENST00000600689 ST8SIA1Q92185 356 aa15.94■□□□□ 0.14
UPF1-210ENST00000600689 FRZBQ92765 325 aa15.94■□□□□ 0.14
UPF1-210ENST00000600689 MOB1AQ9H8S9 216 aa15.94■□□□□ 0.14
UPF1-210ENST00000600689 STRAPQ9Y3F4 350 aaKnown RBP15.94■□□□□ 0.14
UPF1-210ENST00000600689 EPHA1P21709 976 aa15.93■□□□□ 0.14
UPF1-210ENST00000600689 PMELP40967 661 aa15.93■□□□□ 0.14
UPF1-210ENST00000600689 PHYHD1Q5SRE7 291 aa15.93■□□□□ 0.14
UPF1-210ENST00000600689 NIPSNAP3BQ9BS92 247 aa15.93■□□□□ 0.14
UPF1-210ENST00000600689 UBE2J1Q9Y385 318 aaPredicted RBP15.93■□□□□ 0.14
UPF1-210ENST00000600689 A0A087X0M5 115 aa15.93■□□□□ 0.14
UPF1-210ENST00000600689 A0A1B0GX30 115 aa15.93■□□□□ 0.14
UPF1-210ENST00000600689 HSD17B6O14756 317 aa15.93■□□□□ 0.14
UPF1-210ENST00000600689 SELLP14151 372 aa15.93■□□□□ 0.14
UPF1-210ENST00000600689 HERV-K104P61576 105 aa15.93■□□□□ 0.14
UPF1-210ENST00000600689 VAMP2P63027 116 aa15.93■□□□□ 0.14
UPF1-210ENST00000600689 NKAIN1Q4KMZ8 207 aa15.93■□□□□ 0.14
UPF1-210ENST00000600689 LGI3Q8N145 548 aa15.93■□□□□ 0.14
UPF1-210ENST00000600689 NECAP1Q8NC96 275 aa15.93■□□□□ 0.14
UPF1-210ENST00000600689 OR14L1PQ8NHC6 308 aa15.93■□□□□ 0.14
UPF1-210ENST00000600689 CA5BP1Q8WTZ4 195 aa15.93■□□□□ 0.14
UPF1-210ENST00000600689 ZNF837Q96EG3 531 aaPredicted RBP15.93■□□□□ 0.14
UPF1-210ENST00000600689 PGA5P0DJD9 388 aa15.93■□□□□ 0.14
UPF1-210ENST00000600689 AADACP22760 399 aa15.93■□□□□ 0.14
UPF1-210ENST00000600689 FGF8P55075 233 aaPredicted RBP15.93■□□□□ 0.14
UPF1-210ENST00000600689 FAM189A2Q15884 450 aa15.93■□□□□ 0.14
UPF1-210ENST00000600689 SPSB3Q6PJ21 355 aa15.93■□□□□ 0.14
UPF1-210ENST00000600689 FBXL14Q8N1E6 418 aa15.93■□□□□ 0.14
UPF1-210ENST00000600689 MALSU1Q96EH3 234 aa15.93■□□□□ 0.14
UPF1-210ENST00000600689 SCAF4O95104 1147 aaKnown RBP15.92■□□□□ 0.14
UPF1-210ENST00000600689 SRP19P09132 144 aaKnown RBP15.92■□□□□ 0.14
UPF1-210ENST00000600689 ZNF154Q13106 437 aa15.92■□□□□ 0.14
UPF1-210ENST00000600689 AKR1C8PQ5T2L2 129 aa15.92■□□□□ 0.14
UPF1-210ENST00000600689 POC1BQ8TC44 478 aa15.92■□□□□ 0.14
UPF1-210ENST00000600689 ARV1Q9H2C2 271 aa15.92■□□□□ 0.14
UPF1-210ENST00000600689 ZNF442Q9H7R0 627 aa15.92■□□□□ 0.14
UPF1-210ENST00000600689 P4HTMQ9NXG6 502 aa15.92■□□□□ 0.14
UPF1-210ENST00000600689 FOXI3A8MTJ6 420 aaPredicted RBP15.92■□□□□ 0.14
UPF1-210ENST00000600689 DHRS3O75911 302 aa15.92■□□□□ 0.14
UPF1-210ENST00000600689 FOSL2P15408 326 aa15.92■□□□□ 0.14
UPF1-210ENST00000600689 NKX2-1P43699 371 aaPredicted RBP15.92■□□□□ 0.14
UPF1-210ENST00000600689 DYNLT3P51808 116 aa15.92■□□□□ 0.14
UPF1-210ENST00000600689 IZUMO4Q1ZYL8 232 aa15.92■□□□□ 0.14
UPF1-210ENST00000600689 LCN15Q6UWW0 184 aa15.92■□□□□ 0.14
UPF1-210ENST00000600689 M0R135 149 aa15.91■□□□□ 0.14
UPF1-210ENST00000600689 MPV17LQ2QL34 196 aa15.91■□□□□ 0.14
UPF1-210ENST00000600689 SLC25A47Q6Q0C1 308 aa15.91■□□□□ 0.14
UPF1-210ENST00000600689 ZNF799Q96GE5 643 aa15.91■□□□□ 0.14
UPF1-210ENST00000600689 BOD1Q96IK1 185 aa15.91■□□□□ 0.14
UPF1-210ENST00000600689 ZNF385AQ96PM9 386 aaKnown RBP15.91■□□□□ 0.14
UPF1-210ENST00000600689 BCAT2O15382 392 aaPredicted RBP15.91■□□□□ 0.14
UPF1-210ENST00000600689 GPR157Q5UAW9 335 aa15.91■□□□□ 0.14
UPF1-210ENST00000600689 CYB5R2Q6BCY4 276 aa15.91■□□□□ 0.14
UPF1-210ENST00000600689 MYPOPQ86VE0 399 aaPredicted RBP15.91■□□□□ 0.14
UPF1-210ENST00000600689 MSI2Q96DH6 328 aaKnown RBP15.91■□□□□ 0.14
UPF1-210ENST00000600689 GALNT14Q96FL9 552 aa15.91■□□□□ 0.14
UPF1-210ENST00000600689 SSX3Q99909 188 aa15.91■□□□□ 0.14
UPF1-210ENST00000600689 GLRX2Q9NS18 164 aa15.91■□□□□ 0.14
UPF1-210ENST00000600689 FGF21Q9NSA1 209 aa15.91■□□□□ 0.14
UPF1-210ENST00000600689 MRPS17Q9Y2R5 130 aaKnown RBP15.91■□□□□ 0.14
UPF1-210ENST00000600689 DUX1O43812 170 aa15.91■□□□□ 0.14
UPF1-210ENST00000600689 OR7C1O76099 320 aaPredicted RBP15.91■□□□□ 0.14
UPF1-210ENST00000600689 GNRHRP30968 328 aa15.91■□□□□ 0.14
UPF1-210ENST00000600689 HIKESHIQ53FT3 197 aa15.91■□□□□ 0.14
UPF1-210ENST00000600689 PLXDC1Q8IUK5 500 aa15.91■□□□□ 0.14
UPF1-210ENST00000600689 ZNF695Q8IW36 515 aa15.91■□□□□ 0.14
UPF1-210ENST00000600689 ZNF441Q8N8Z8 693 aa15.91■□□□□ 0.14
UPF1-210ENST00000600689 PLPP5Q8NEB5 264 aa15.91■□□□□ 0.14
UPF1-210ENST00000600689 ABHD5Q8WTS1 349 aa15.91■□□□□ 0.14
UPF1-210ENST00000600689 Q96M66 194 aa15.91■□□□□ 0.14
UPF1-210ENST00000600689 METTL9Q9H1A3 318 aa15.91■□□□□ 0.14
UPF1-210ENST00000600689 FSCN3Q9NQT6 498 aa15.91■□□□□ 0.14
UPF1-210ENST00000600689 BTBD17A6NE02 478 aa15.9■□□□□ 0.14
UPF1-210ENST00000600689 ZNF705GA8MUZ8 300 aaPredicted RBP15.9■□□□□ 0.14
UPF1-210ENST00000600689 ADAM20O43506 726 aa15.9■□□□□ 0.14
UPF1-210ENST00000600689 CMTM1Q8IZ96 169 aa15.9■□□□□ 0.14
UPF1-210ENST00000600689 HIST3H2BBQ8N257 126 aa15.9■□□□□ 0.14
UPF1-210ENST00000600689 D2HGDHQ8N465 521 aa15.9■□□□□ 0.14
UPF1-210ENST00000600689 TVP23CQ96ET8 276 aa15.9■□□□□ 0.14
UPF1-210ENST00000600689 YPEL4Q96NS1 127 aa15.9■□□□□ 0.14
UPF1-210ENST00000600689 UCN2Q96RP3 112 aa15.9■□□□□ 0.14
UPF1-210ENST00000600689 ZNF407Q9C0G0 2248 aa15.9■□□□□ 0.14
UPF1-210ENST00000600689 IGKV1-27A0A075B6S5 117 aa15.9■□□□□ 0.14
UPF1-210ENST00000600689 A0A1W2PR80 420 aa15.9■□□□□ 0.14
UPF1-210ENST00000600689 OR5H1A6NKK0 313 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms