RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 USP9YO00507 2555 aaPredicted RBP12.99□□□□□ -0.33
UPF1-206ENST00000598471 TRAV38-1A0A0B4J264 116 aa12.98□□□□□ -0.33
UPF1-206ENST00000598471 OOEPA6NGQ2 149 aa12.98□□□□□ -0.33
UPF1-206ENST00000598471 OR2AT4A6NND4 320 aa12.98□□□□□ -0.33
UPF1-206ENST00000598471 LGALS8O00214 317 aa12.98□□□□□ -0.33
UPF1-206ENST00000598471 SIRPB1O00241 398 aa12.98□□□□□ -0.33
UPF1-206ENST00000598471 OR2H2O95918 312 aa12.98□□□□□ -0.33
UPF1-206ENST00000598471 CD3GP09693 182 aa12.98□□□□□ -0.33
UPF1-206ENST00000598471 IL7P13232 177 aa12.98□□□□□ -0.33
UPF1-206ENST00000598471 CDKN1AP38936 164 aa12.98□□□□□ -0.33
UPF1-206ENST00000598471 CBX5P45973 191 aa12.98□□□□□ -0.33
UPF1-206ENST00000598471 DGCR2P98153 550 aa12.98□□□□□ -0.33
UPF1-206ENST00000598471 SSBP1Q04837 148 aaKnown RBP12.98□□□□□ -0.33
UPF1-206ENST00000598471 PDCD1Q15116 288 aa12.98□□□□□ -0.33
UPF1-206ENST00000598471 KCNJ8Q15842 424 aa12.98□□□□□ -0.33
UPF1-206ENST00000598471 RNASE12Q5GAN4 147 aaKnown RBP12.98□□□□□ -0.33
UPF1-206ENST00000598471 TEX36Q5VZQ5 186 aa12.98□□□□□ -0.33
UPF1-206ENST00000598471 SIGIRRQ6IA17 410 aa12.98□□□□□ -0.33
UPF1-206ENST00000598471 Q6P435 159 aa12.98□□□□□ -0.33
UPF1-206ENST00000598471 PEG10Q86TG7 708 aaKnown RBP12.98□□□□□ -0.33
UPF1-206ENST00000598471 C19orf18Q8NEA5 215 aa12.98□□□□□ -0.33
UPF1-206ENST00000598471 OR52I2Q8NH67 350 aa12.98□□□□□ -0.33
UPF1-206ENST00000598471 ST8SIA4Q92187 359 aa12.98□□□□□ -0.33
UPF1-206ENST00000598471 SDHCQ99643 169 aaPredicted RBP12.98□□□□□ -0.33
UPF1-206ENST00000598471 THAP7Q9BT49 309 aaPredicted RBP12.98□□□□□ -0.33
UPF1-206ENST00000598471 RAI1Q7Z5J4 1906 aaPredicted RBP12.98□□□□□ -0.33
UPF1-206ENST00000598471 PPIAL4EA0A075B759 164 aa12.97□□□□□ -0.33
UPF1-206ENST00000598471 RFPL4AA6NLU0 287 aa12.97□□□□□ -0.33
UPF1-206ENST00000598471 PPIAL4DF5H284 164 aa12.97□□□□□ -0.33
UPF1-206ENST00000598471 C3orf80F5H4A9 247 aa12.97□□□□□ -0.33
UPF1-206ENST00000598471 RFPL4AL1F8VTS6 287 aa12.97□□□□□ -0.33
UPF1-206ENST00000598471 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.97□□□□□ -0.33
UPF1-206ENST00000598471 RBBP9O75884 186 aa12.97□□□□□ -0.33
UPF1-206ENST00000598471 CSF3P09919 207 aa12.97□□□□□ -0.33
UPF1-206ENST00000598471 PPIAL4FP0DN26 164 aa12.97□□□□□ -0.33
UPF1-206ENST00000598471 PSG2P11465 335 aa12.97□□□□□ -0.33
UPF1-206ENST00000598471 PTHLHP12272 177 aa12.97□□□□□ -0.33
UPF1-206ENST00000598471 DAOP14920 347 aa12.97□□□□□ -0.33
UPF1-206ENST00000598471 ACTBP60709 375 aa12.97□□□□□ -0.33
UPF1-206ENST00000598471 ACTG1P63261 375 aa12.97□□□□□ -0.33
UPF1-206ENST00000598471 PAN3Q58A45 887 aaKnown RBP12.97□□□□□ -0.33
UPF1-206ENST00000598471 TRAPPC6BQ86SZ2 158 aa12.97□□□□□ -0.33
UPF1-206ENST00000598471 ZNF295-AS1Q8N0V1 137 aa12.97□□□□□ -0.33
UPF1-206ENST00000598471 SUMF2Q8NBJ7 301 aa12.97□□□□□ -0.33
UPF1-206ENST00000598471 PPP1R35Q8TAP8 253 aa12.97□□□□□ -0.33
UPF1-206ENST00000598471 GPX8Q8TED1 209 aa12.97□□□□□ -0.33
UPF1-206ENST00000598471 GCDHQ92947 438 aaPredicted RBP12.97□□□□□ -0.33
UPF1-206ENST00000598471 CMSS1Q9BQ75 279 aaKnown RBP12.97□□□□□ -0.33
UPF1-206ENST00000598471 DPCDQ9BVM2 203 aaPredicted RBP12.97□□□□□ -0.33
UPF1-206ENST00000598471 IFT46Q9NQC8 304 aa12.97□□□□□ -0.33
UPF1-206ENST00000598471 PPIAL4AQ9Y536 164 aa12.97□□□□□ -0.33
UPF1-206ENST00000598471 CACNG2Q9Y698 323 aa12.97□□□□□ -0.33
UPF1-206ENST00000598471 ARFGEF3Q5TH69 2177 aa12.97□□□□□ -0.33
UPF1-206ENST00000598471 IGHV3OR15-7A0A075B7D8 119 aa12.96□□□□□ -0.33
UPF1-206ENST00000598471 UBE2QL1A1L167 161 aa12.96□□□□□ -0.33
UPF1-206ENST00000598471 NKX6-3A6NJ46 265 aa12.96□□□□□ -0.33
UPF1-206ENST00000598471 OVOL3O00110 214 aa12.96□□□□□ -0.33
UPF1-206ENST00000598471 GSTT2BP0CG30 244 aa12.96□□□□□ -0.33
UPF1-206ENST00000598471 PRDX2P32119 198 aa12.96□□□□□ -0.33
UPF1-206ENST00000598471 MDH2P40926 338 aaKnown RBP12.96□□□□□ -0.33
UPF1-206ENST00000598471 GABRA2P47869 451 aa12.96□□□□□ -0.33
UPF1-206ENST00000598471 KCNJ3P48549 501 aa12.96□□□□□ -0.33
UPF1-206ENST00000598471 EFNA4P52798 201 aa12.96□□□□□ -0.33
UPF1-206ENST00000598471 DEFA1P59665 94 aa12.96□□□□□ -0.33
UPF1-206ENST00000598471 DEFA3P59666 94 aa12.96□□□□□ -0.33
UPF1-206ENST00000598471 AP3S2P59780 193 aa12.96□□□□□ -0.33
UPF1-206ENST00000598471 BAK1Q16611 211 aa12.96□□□□□ -0.33
UPF1-206ENST00000598471 ZNF57Q68EA5 555 aaPredicted RBP12.96□□□□□ -0.33
UPF1-206ENST00000598471 SFRP4Q6FHJ7 346 aaPredicted RBP12.96□□□□□ -0.33
UPF1-206ENST00000598471 NUDCD2Q8WVJ2 157 aa12.96□□□□□ -0.33
UPF1-206ENST00000598471 YIPF5Q969M3 257 aa12.96□□□□□ -0.33
UPF1-206ENST00000598471 SEH1LQ96EE3 360 aa12.96□□□□□ -0.33
UPF1-206ENST00000598471 TIMD4Q96H15 378 aa12.96□□□□□ -0.33
UPF1-206ENST00000598471 SULT4A1Q9BR01 284 aa12.96□□□□□ -0.33
UPF1-206ENST00000598471 FAAP24Q9BTP7 215 aa12.96□□□□□ -0.33
UPF1-206ENST00000598471 MYOZ1Q9NP98 299 aaPredicted RBP12.96□□□□□ -0.33
UPF1-206ENST00000598471 TAS2R8Q9NYW2 309 aa12.96□□□□□ -0.33
UPF1-206ENST00000598471 ZNF581Q9P0T4 197 aa12.96□□□□□ -0.33
UPF1-206ENST00000598471 AK3Q9UIJ7 227 aa12.96□□□□□ -0.33
UPF1-206ENST00000598471 CHD3Q12873 2000 aaKnown RBP12.95□□□□□ -0.34
UPF1-206ENST00000598471 TRAV24A0A0B4J272 114 aa12.95□□□□□ -0.34
UPF1-206ENST00000598471 A0A1W2PQ09 198 aa12.95□□□□□ -0.34
UPF1-206ENST00000598471 MEIOCA2RUB1 952 aa12.95□□□□□ -0.34
UPF1-206ENST00000598471 ISPDA4D126 451 aa12.95□□□□□ -0.34
UPF1-206ENST00000598471 H7C1Q1 480 aa12.95□□□□□ -0.34
UPF1-206ENST00000598471 SLC33A1O00400 549 aaPredicted RBP12.95□□□□□ -0.34
UPF1-206ENST00000598471 HSPB6O14558 160 aa12.95□□□□□ -0.34
UPF1-206ENST00000598471 ECDO95905 644 aaPredicted RBP12.95□□□□□ -0.34
UPF1-206ENST00000598471 F12P00748 615 aaPredicted RBP12.95□□□□□ -0.34
UPF1-206ENST00000598471 CSF1P09603 554 aa12.95□□□□□ -0.34
UPF1-206ENST00000598471 LMO1P25800 156 aa12.95□□□□□ -0.34
UPF1-206ENST00000598471 RCVRNP35243 200 aa12.95□□□□□ -0.34
UPF1-206ENST00000598471 GDNFP39905 211 aa12.95□□□□□ -0.34
UPF1-206ENST00000598471 CEBPDP49716 269 aaPredicted RBP12.95□□□□□ -0.34
UPF1-206ENST00000598471 GUCA2AQ02747 115 aa12.95□□□□□ -0.34
UPF1-206ENST00000598471 COL10A1Q03692 680 aa12.95□□□□□ -0.34
UPF1-206ENST00000598471 FAM201AQ5SY85 155 aa12.95□□□□□ -0.34
UPF1-206ENST00000598471 SHEQ5VZ18 495 aa12.95□□□□□ -0.34
UPF1-206ENST00000598471 STUMQ69YW2 141 aa12.95□□□□□ -0.34
UPF1-206ENST00000598471 DNM1P46Q6ZS02 220 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms