RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 UBE2E1P51965 193 aa13.19□□□□□ -0.3
TRIM28-213ENST00000598355 MEF2CQ06413 473 aaPredicted RBP13.19□□□□□ -0.3
TRIM28-213ENST00000598355 BAMBIQ13145 260 aa13.19□□□□□ -0.3
TRIM28-213ENST00000598355 BLMHQ13867 455 aa13.19□□□□□ -0.3
TRIM28-213ENST00000598355 Q6P435 159 aa13.19□□□□□ -0.3
TRIM28-213ENST00000598355 LYPD6Q86Y78 171 aa13.19□□□□□ -0.3
TRIM28-213ENST00000598355 TMEM86BQ8N661 226 aa13.19□□□□□ -0.3
TRIM28-213ENST00000598355 OR51T1Q8NGJ9 327 aa13.19□□□□□ -0.3
TRIM28-213ENST00000598355 ORAI1Q96D31 301 aa13.19□□□□□ -0.3
TRIM28-213ENST00000598355 DERL3Q96Q80 235 aa13.19□□□□□ -0.3
TRIM28-213ENST00000598355 OR14A2Q96R54 314 aa13.19□□□□□ -0.3
TRIM28-213ENST00000598355 EXOSC4Q9NPD3 245 aaKnown RBP13.19□□□□□ -0.3
TRIM28-213ENST00000598355 IL36GQ9NZH8 169 aa13.19□□□□□ -0.3
TRIM28-213ENST00000598355 A0A0U1RQK1 487 aa13.18□□□□□ -0.3
TRIM28-213ENST00000598355 A0A1W2PPH5 198 aa13.18□□□□□ -0.3
TRIM28-213ENST00000598355 MAGEA13PA6NCF6 341 aa13.18□□□□□ -0.3
TRIM28-213ENST00000598355 PTGES3LE9PB15 166 aa13.18□□□□□ -0.3
TRIM28-213ENST00000598355 PIN1P1O15428 100 aa13.18□□□□□ -0.3
TRIM28-213ENST00000598355 SC5DO75845 299 aa13.18□□□□□ -0.3
TRIM28-213ENST00000598355 MELTFP08582 738 aa13.18□□□□□ -0.3
TRIM28-213ENST00000598355 TMEM225BP0DP42 221 aa13.18□□□□□ -0.3
TRIM28-213ENST00000598355 CCL3L1P16619 93 aa13.18□□□□□ -0.3
TRIM28-213ENST00000598355 BDKRB2P30411 391 aa13.18□□□□□ -0.3
TRIM28-213ENST00000598355 BMXP51813 675 aa13.18□□□□□ -0.3
TRIM28-213ENST00000598355 PPP3R1P63098 170 aa13.18□□□□□ -0.3
TRIM28-213ENST00000598355 NHLRC3Q5JS37 347 aa13.18□□□□□ -0.3
TRIM28-213ENST00000598355 DDI2Q5TDH0 399 aa13.18□□□□□ -0.3
TRIM28-213ENST00000598355 GDPD3Q7L5L3 318 aa13.18□□□□□ -0.3
TRIM28-213ENST00000598355 CHST4Q8NCG5 386 aa13.18□□□□□ -0.3
TRIM28-213ENST00000598355 OR4S1Q8NGB4 309 aa13.18□□□□□ -0.3
TRIM28-213ENST00000598355 OR4M1Q8NGD0 313 aa13.18□□□□□ -0.3
TRIM28-213ENST00000598355 THRSPQ92748 146 aa13.18□□□□□ -0.3
TRIM28-213ENST00000598355 OR5M11Q96RB7 305 aa13.18□□□□□ -0.3
TRIM28-213ENST00000598355 ZNRD1Q9P1U0 126 aa13.18□□□□□ -0.3
TRIM28-213ENST00000598355 RAB26Q9ULW5 256 aa13.18□□□□□ -0.3
TRIM28-213ENST00000598355 FOXJ3Q9UPW0 622 aa13.18□□□□□ -0.3
TRIM28-213ENST00000598355 GSTK1Q9Y2Q3 226 aa13.18□□□□□ -0.3
TRIM28-213ENST00000598355 TPRKBQ9Y3C4 175 aa13.18□□□□□ -0.3
TRIM28-213ENST00000598355 POMT1Q9Y6A1 747 aa13.18□□□□□ -0.3
TRIM28-213ENST00000598355 LINC00312Q9Y6C7 94 aa13.18□□□□□ -0.3
TRIM28-213ENST00000598355 PNMA8CA0A1B0GUJ8 204 aa13.17□□□□□ -0.3
TRIM28-213ENST00000598355 SH2D1BO14796 132 aa13.17□□□□□ -0.3
TRIM28-213ENST00000598355 MGST3O14880 152 aa13.17□□□□□ -0.3
TRIM28-213ENST00000598355 NPFFO15130 113 aa13.17□□□□□ -0.3
TRIM28-213ENST00000598355 MAGEB3O15480 346 aa13.17□□□□□ -0.3
TRIM28-213ENST00000598355 HOXA3O43365 443 aaPredicted RBP13.17□□□□□ -0.3
TRIM28-213ENST00000598355 CALCBP10092 127 aa13.17□□□□□ -0.3
TRIM28-213ENST00000598355 SAA4P35542 130 aa13.17□□□□□ -0.3
TRIM28-213ENST00000598355 VHLP40337 213 aa13.17□□□□□ -0.3
TRIM28-213ENST00000598355 PTGFRP43088 359 aa13.17□□□□□ -0.3
TRIM28-213ENST00000598355 OR3A4PP47883 348 aa13.17□□□□□ -0.3
TRIM28-213ENST00000598355 PAX5Q02548 391 aa13.17□□□□□ -0.3
TRIM28-213ENST00000598355 PRB3Q04118 309 aaPredicted RBP13.17□□□□□ -0.3
TRIM28-213ENST00000598355 IL13RA2Q14627 380 aa13.17□□□□□ -0.3
TRIM28-213ENST00000598355 SPHARQ15513 63 aa13.17□□□□□ -0.3
TRIM28-213ENST00000598355 GRK1Q15835 563 aa13.17□□□□□ -0.3
TRIM28-213ENST00000598355 PDZD9Q8IXQ8 264 aa13.17□□□□□ -0.3
TRIM28-213ENST00000598355 TNFAIP8L1Q8WVP5 186 aa13.17□□□□□ -0.3
TRIM28-213ENST00000598355 SLC25A28Q96A46 364 aa13.17□□□□□ -0.3
TRIM28-213ENST00000598355 AJUBAQ96IF1 538 aa13.17□□□□□ -0.3
TRIM28-213ENST00000598355 DUX5Q96PT3 197 aa13.17□□□□□ -0.3
TRIM28-213ENST00000598355 CHST6Q9GZX3 395 aa13.17□□□□□ -0.3
TRIM28-213ENST00000598355 GLS2Q9UI32 602 aa13.17□□□□□ -0.3
TRIM28-213ENST00000598355 SLC33A1O00400 549 aaPredicted RBP13.16□□□□□ -0.3
TRIM28-213ENST00000598355 ZNF728P0DKX0 622 aa13.16□□□□□ -0.3
TRIM28-213ENST00000598355 HKR1P10072 659 aa13.16□□□□□ -0.3
TRIM28-213ENST00000598355 GABRR1P24046 479 aa13.16□□□□□ -0.3
TRIM28-213ENST00000598355 ZNF93P35789 620 aaPredicted RBP13.16□□□□□ -0.3
TRIM28-213ENST00000598355 SNU13P55769 128 aaKnown RBP13.16□□□□□ -0.3
TRIM28-213ENST00000598355 P2RX3P56373 397 aa13.16□□□□□ -0.3
TRIM28-213ENST00000598355 EDDM3BP56851 147 aa13.16□□□□□ -0.3
TRIM28-213ENST00000598355 ACTG1P63261 375 aa13.16□□□□□ -0.3
TRIM28-213ENST00000598355 GPR50Q13585 617 aa13.16□□□□□ -0.3
TRIM28-213ENST00000598355 MIDNQ504T8 468 aa13.16□□□□□ -0.3
TRIM28-213ENST00000598355 UNQ9370/PRO34162Q6UXP9 181 aa13.16□□□□□ -0.3
TRIM28-213ENST00000598355 PRSS48Q7RTY5 328 aa13.16□□□□□ -0.3
TRIM28-213ENST00000598355 CDH26Q8IXH8 852 aa13.16□□□□□ -0.3
TRIM28-213ENST00000598355 PPP1R35Q8TAP8 253 aa13.16□□□□□ -0.3
TRIM28-213ENST00000598355 SSMEM1Q8WWF3 244 aa13.16□□□□□ -0.3
TRIM28-213ENST00000598355 GPER1Q99527 375 aa13.16□□□□□ -0.3
TRIM28-213ENST00000598355 ZNF184Q99676 751 aaPredicted RBP13.16□□□□□ -0.3
TRIM28-213ENST00000598355 NKX3-1Q99801 234 aaPredicted RBP13.16□□□□□ -0.3
TRIM28-213ENST00000598355 A0A0G2JK05 382 aa13.15□□□□□ -0.3
TRIM28-213ENST00000598355 hCG_1809904A0A1W2PP81 198 aa13.15□□□□□ -0.3
TRIM28-213ENST00000598355 A0A1W2PPE2 198 aa13.15□□□□□ -0.3
TRIM28-213ENST00000598355 A0A1W2PR64 198 aa13.15□□□□□ -0.3
TRIM28-213ENST00000598355 A0A1W2PRV1 198 aa13.15□□□□□ -0.3
TRIM28-213ENST00000598355 hADV38S2A0JD32 116 aa13.15□□□□□ -0.3
TRIM28-213ENST00000598355 SIRPB1O00241 398 aa13.15□□□□□ -0.3
TRIM28-213ENST00000598355 RGS10O43665 173 aa13.15□□□□□ -0.3
TRIM28-213ENST00000598355 FBP1P09467 338 aa13.15□□□□□ -0.3
TRIM28-213ENST00000598355 EEF1B2P24534 225 aaKnown RBP13.15□□□□□ -0.3
TRIM28-213ENST00000598355 MAPK3P27361 379 aaPredicted RBP13.15□□□□□ -0.3
TRIM28-213ENST00000598355 IER3P46695 156 aa13.15□□□□□ -0.3
TRIM28-213ENST00000598355 GP2P55259 537 aaKnown RBP13.15□□□□□ -0.3
TRIM28-213ENST00000598355 ERVFRD-1P60508 538 aa13.15□□□□□ -0.3
TRIM28-213ENST00000598355 EDDM3AQ14507 147 aa13.15□□□□□ -0.3
TRIM28-213ENST00000598355 RBM48Q5RL73 367 aaKnown RBP13.15□□□□□ -0.3
TRIM28-213ENST00000598355 PNKDQ8N490 385 aa13.15□□□□□ -0.3
TRIM28-213ENST00000598355 MS4A15Q8N5U1 240 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms