RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 OR2AT4A6NND4 320 aa12.82□□□□□ -0.36
TRIM28-209ENST00000597423 POM121CA8CG34 1229 aa12.82□□□□□ -0.36
TRIM28-209ENST00000597423 CENPXA8MT69 81 aa12.82□□□□□ -0.36
TRIM28-209ENST00000597423 PPIAL4DF5H284 164 aa12.82□□□□□ -0.36
TRIM28-209ENST00000597423 RFPL4AL1F8VTS6 287 aa12.82□□□□□ -0.36
TRIM28-209ENST00000597423 LGALS8O00214 317 aa12.82□□□□□ -0.36
TRIM28-209ENST00000597423 NDUFA2O43678 99 aa12.82□□□□□ -0.36
TRIM28-209ENST00000597423 CYB5R3P00387 301 aaPredicted RBP12.82□□□□□ -0.36
TRIM28-209ENST00000597423 F12P00748 615 aaPredicted RBP12.82□□□□□ -0.36
TRIM28-209ENST00000597423 HPXP02790 462 aa12.82□□□□□ -0.36
TRIM28-209ENST00000597423 CSF3P09919 207 aa12.82□□□□□ -0.36
TRIM28-209ENST00000597423 PPIAL4FP0DN26 164 aa12.82□□□□□ -0.36
TRIM28-209ENST00000597423 LMO1P25800 156 aa12.82□□□□□ -0.36
TRIM28-209ENST00000597423 KCNJ3P48549 501 aa12.82□□□□□ -0.36
TRIM28-209ENST00000597423 BAK1Q16611 211 aa12.82□□□□□ -0.36
TRIM28-209ENST00000597423 ZNF57Q68EA5 555 aaPredicted RBP12.82□□□□□ -0.36
TRIM28-209ENST00000597423 SIGIRRQ6IA17 410 aa12.82□□□□□ -0.36
TRIM28-209ENST00000597423 Q6P435 159 aa12.82□□□□□ -0.36
TRIM28-209ENST00000597423 DNM1P46Q6ZS02 220 aa12.82□□□□□ -0.36
TRIM28-209ENST00000597423 C6orf201Q7Z4U5 140 aa12.82□□□□□ -0.36
TRIM28-209ENST00000597423 OR52I2Q8NH67 350 aa12.82□□□□□ -0.36
TRIM28-209ENST00000597423 GPX8Q8TED1 209 aa12.82□□□□□ -0.36
TRIM28-209ENST00000597423 DEDD2Q8WXF8 326 aa12.82□□□□□ -0.36
TRIM28-209ENST00000597423 ST8SIA4Q92187 359 aa12.82□□□□□ -0.36
TRIM28-209ENST00000597423 COX4I2Q96KJ9 171 aa12.82□□□□□ -0.36
TRIM28-209ENST00000597423 SDHCQ99643 169 aaPredicted RBP12.82□□□□□ -0.36
TRIM28-209ENST00000597423 DPCDQ9BVM2 203 aaPredicted RBP12.82□□□□□ -0.36
TRIM28-209ENST00000597423 MYOZ1Q9NP98 299 aaPredicted RBP12.82□□□□□ -0.36
TRIM28-209ENST00000597423 IFT46Q9NQC8 304 aa12.82□□□□□ -0.36
TRIM28-209ENST00000597423 TREM2Q9NZC2 230 aa12.82□□□□□ -0.36
TRIM28-209ENST00000597423 RCC2Q9P258 522 aaKnown RBP12.82□□□□□ -0.36
TRIM28-209ENST00000597423 ZNF107Q9UII5 783 aaPredicted RBP12.82□□□□□ -0.36
TRIM28-209ENST00000597423 PPIAL4AQ9Y536 164 aa12.82□□□□□ -0.36
TRIM28-209ENST00000597423 FLNCQ14315 2725 aa12.82□□□□□ -0.36
TRIM28-209ENST00000597423 FSTL3O95633 263 aa12.81□□□□□ -0.36
TRIM28-209ENST00000597423 OR2H2O95918 312 aa12.81□□□□□ -0.36
TRIM28-209ENST00000597423 CSF1P09603 554 aa12.81□□□□□ -0.36
TRIM28-209ENST00000597423 PSG2P11465 335 aa12.81□□□□□ -0.36
TRIM28-209ENST00000597423 MDH2P40926 338 aaKnown RBP12.81□□□□□ -0.36
TRIM28-209ENST00000597423 GABRA2P47869 451 aa12.81□□□□□ -0.36
TRIM28-209ENST00000597423 EFNA4P52798 201 aa12.81□□□□□ -0.36
TRIM28-209ENST00000597423 DGCR2P98153 550 aa12.81□□□□□ -0.36
TRIM28-209ENST00000597423 PDCD1Q15116 288 aa12.81□□□□□ -0.36
TRIM28-209ENST00000597423 PAN3Q58A45 887 aaKnown RBP12.81□□□□□ -0.36
TRIM28-209ENST00000597423 TEX36Q5VZQ5 186 aa12.81□□□□□ -0.36
TRIM28-209ENST00000597423 TRAPPC6BQ86SZ2 158 aa12.81□□□□□ -0.36
TRIM28-209ENST00000597423 TOMM5Q8N4H5 51 aa12.81□□□□□ -0.36
TRIM28-209ENST00000597423 SUMF2Q8NBJ7 301 aa12.81□□□□□ -0.36
TRIM28-209ENST00000597423 YIPF5Q969M3 257 aa12.81□□□□□ -0.36
TRIM28-209ENST00000597423 TIMD4Q96H15 378 aa12.81□□□□□ -0.36
TRIM28-209ENST00000597423 CCL19Q99731 98 aa12.81□□□□□ -0.36
TRIM28-209ENST00000597423 CMSS1Q9BQ75 279 aaKnown RBP12.81□□□□□ -0.36
TRIM28-209ENST00000597423 OCSTAMPQ9BR26 566 aa12.81□□□□□ -0.36
TRIM28-209ENST00000597423 CHST6Q9GZX3 395 aa12.81□□□□□ -0.36
TRIM28-209ENST00000597423 DNTTIP1Q9H147 329 aa12.81□□□□□ -0.36
TRIM28-209ENST00000597423 MTFP1Q9UDX5 166 aa12.81□□□□□ -0.36
TRIM28-209ENST00000597423 USP9XQ93008 2570 aaPredicted RBP12.8□□□□□ -0.36
TRIM28-209ENST00000597423 UBE2QL1A1L167 161 aa12.8□□□□□ -0.36
TRIM28-209ENST00000597423 NKX6-3A6NJ46 265 aa12.8□□□□□ -0.36
TRIM28-209ENST00000597423 C3orf80F5H4A9 247 aa12.8□□□□□ -0.36
TRIM28-209ENST00000597423 SIRPB1O00241 398 aa12.8□□□□□ -0.36
TRIM28-209ENST00000597423 ORC5O43913 435 aa12.8□□□□□ -0.36
TRIM28-209ENST00000597423 DAOP14920 347 aa12.8□□□□□ -0.36
TRIM28-209ENST00000597423 EGR1P18146 543 aa12.8□□□□□ -0.36
TRIM28-209ENST00000597423 RCVRNP35243 200 aa12.8□□□□□ -0.36
TRIM28-209ENST00000597423 FAUP35544 74 aaKnown RBP12.8□□□□□ -0.36
TRIM28-209ENST00000597423 GDNFP39905 211 aa12.8□□□□□ -0.36
TRIM28-209ENST00000597423 TMEM33P57088 247 aa12.8□□□□□ -0.36
TRIM28-209ENST00000597423 RNASE12Q5GAN4 147 aaKnown RBP12.8□□□□□ -0.36
TRIM28-209ENST00000597423 SHEQ5VZ18 495 aa12.8□□□□□ -0.36
TRIM28-209ENST00000597423 SFRP4Q6FHJ7 346 aaPredicted RBP12.8□□□□□ -0.36
TRIM28-209ENST00000597423 MZT2BQ6NZ67 158 aa12.8□□□□□ -0.36
TRIM28-209ENST00000597423 OR5D13Q8NGL4 314 aa12.8□□□□□ -0.36
TRIM28-209ENST00000597423 SETD6Q8TBK2 473 aa12.8□□□□□ -0.36
TRIM28-209ENST00000597423 RAB1CQ92928 201 aa12.8□□□□□ -0.36
TRIM28-209ENST00000597423 MED30Q96HR3 178 aa12.8□□□□□ -0.36
TRIM28-209ENST00000597423 PSMG3-AS1Q96PY0 264 aa12.8□□□□□ -0.36
TRIM28-209ENST00000597423 SULT4A1Q9BR01 284 aa12.8□□□□□ -0.36
TRIM28-209ENST00000597423 CHMP1AQ9HD42 196 aaPredicted RBP12.8□□□□□ -0.36
TRIM28-209ENST00000597423 ETAA1Q9NY74 926 aa12.8□□□□□ -0.36
TRIM28-209ENST00000597423 IL36RNQ9UBH0 155 aa12.8□□□□□ -0.36
TRIM28-209ENST00000597423 AK3Q9UIJ7 227 aa12.8□□□□□ -0.36
TRIM28-209ENST00000597423 KCNK7Q9Y2U2 307 aa12.8□□□□□ -0.36
TRIM28-209ENST00000597423 RBMX2Q9Y388 322 aaKnown RBP12.8□□□□□ -0.36
TRIM28-209ENST00000597423 ICE1Q9Y2F5 2266 aa12.79□□□□□ -0.36
TRIM28-209ENST00000597423 ROS1P08922 2347 aa12.79□□□□□ -0.36
TRIM28-209ENST00000597423 TRAV24A0A0B4J272 114 aa12.79□□□□□ -0.36
TRIM28-209ENST00000597423 A0A1W2PQ09 198 aa12.79□□□□□ -0.36
TRIM28-209ENST00000597423 FUOMA2VDF0 154 aa12.79□□□□□ -0.36
TRIM28-209ENST00000597423 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.79□□□□□ -0.36
TRIM28-209ENST00000597423 OVOL3O00110 214 aa12.79□□□□□ -0.36
TRIM28-209ENST00000597423 SLC33A1O00400 549 aaPredicted RBP12.79□□□□□ -0.36
TRIM28-209ENST00000597423 DTYMKP23919 212 aa12.79□□□□□ -0.36
TRIM28-209ENST00000597423 COL8A2P25067 703 aa12.79□□□□□ -0.36
TRIM28-209ENST00000597423 CD80P33681 288 aa12.79□□□□□ -0.36
TRIM28-209ENST00000597423 ATPAF1Q5TC12 328 aaPredicted RBP12.79□□□□□ -0.36
TRIM28-209ENST00000597423 STEAP3Q658P3 488 aa12.79□□□□□ -0.36
TRIM28-209ENST00000597423 BRICD5Q6PL45 260 aa12.79□□□□□ -0.36
TRIM28-209ENST00000597423 LYSMD2Q8IV50 215 aa12.79□□□□□ -0.36
TRIM28-209ENST00000597423 ZNF561Q8N587 486 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 120.9 ms