RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 C19orf18Q8NEA5 215 aa7.89□□□□□ -1.15
TRIM28-208ENST00000597172 GCDHQ92947 438 aaPredicted RBP7.89□□□□□ -1.15
TRIM28-208ENST00000597172 Q96M66 194 aa7.89□□□□□ -1.15
TRIM28-208ENST00000597172 WDFY2Q96P53 400 aa7.89□□□□□ -1.15
TRIM28-208ENST00000597172 GAL3ST1Q99999 423 aa7.89□□□□□ -1.15
TRIM28-208ENST00000597172 SOSTQ9BQB4 213 aa7.89□□□□□ -1.15
TRIM28-208ENST00000597172 NICN1Q9BSH3 213 aa7.89□□□□□ -1.15
TRIM28-208ENST00000597172 TM2D1Q9BX74 207 aa7.89□□□□□ -1.15
TRIM28-208ENST00000597172 SELENOIQ9C0D9 397 aa7.89□□□□□ -1.15
TRIM28-208ENST00000597172 RHOFQ9HBH0 211 aa7.89□□□□□ -1.15
TRIM28-208ENST00000597172 TMEM106BQ9NUM4 274 aa7.89□□□□□ -1.15
TRIM28-208ENST00000597172 RHBDL2Q9NX52 303 aa7.89□□□□□ -1.15
TRIM28-208ENST00000597172 RASL12Q9NYN1 266 aa7.89□□□□□ -1.15
TRIM28-208ENST00000597172 PEX16Q9Y5Y5 336 aa7.89□□□□□ -1.15
TRIM28-208ENST00000597172 IGHV3OR15-7A0A075B7D8 119 aa7.88□□□□□ -1.15
TRIM28-208ENST00000597172 RAB27BO00194 218 aa7.88□□□□□ -1.15
TRIM28-208ENST00000597172 TNFRSF13BO14836 293 aaPredicted RBP7.88□□□□□ -1.15
TRIM28-208ENST00000597172 GEMIN2O14893 280 aaKnown RBP7.88□□□□□ -1.15
TRIM28-208ENST00000597172 TMPRSS2O15393 492 aa7.88□□□□□ -1.15
TRIM28-208ENST00000597172 SOCS1O15524 211 aa7.88□□□□□ -1.15
TRIM28-208ENST00000597172 NXPH2O95156 264 aa7.88□□□□□ -1.15
TRIM28-208ENST00000597172 IGHV4-39P01824 125 aa7.88□□□□□ -1.15
TRIM28-208ENST00000597172 APOA1P02647 267 aa7.88□□□□□ -1.15
TRIM28-208ENST00000597172 TFF1P04155 84 aa7.88□□□□□ -1.15
TRIM28-208ENST00000597172 DAOP14920 347 aa7.88□□□□□ -1.15
TRIM28-208ENST00000597172 PRKACAP17612 351 aa7.88□□□□□ -1.15
TRIM28-208ENST00000597172 HNF1AP20823 631 aa7.88□□□□□ -1.15
TRIM28-208ENST00000597172 GLRA1P23415 457 aa7.88□□□□□ -1.15
TRIM28-208ENST00000597172 DUSP1P28562 367 aa7.88□□□□□ -1.15
TRIM28-208ENST00000597172 VEGFCP49767 419 aa7.88□□□□□ -1.15
TRIM28-208ENST00000597172 EFNA4P52798 201 aa7.88□□□□□ -1.15
TRIM28-208ENST00000597172 ACTG1P63261 375 aa7.88□□□□□ -1.15
TRIM28-208ENST00000597172 MRPS11P82912 194 aaKnown RBP7.88□□□□□ -1.15
TRIM28-208ENST00000597172 LSAMPQ13449 338 aa7.88□□□□□ -1.15
TRIM28-208ENST00000597172 ZNF146Q15072 292 aa7.88□□□□□ -1.15
TRIM28-208ENST00000597172 TAF9Q16594 264 aa7.88□□□□□ -1.15
TRIM28-208ENST00000597172 NHLRC3Q5JS37 347 aa7.88□□□□□ -1.15
TRIM28-208ENST00000597172 SFRP4Q6FHJ7 346 aaPredicted RBP7.88□□□□□ -1.15
TRIM28-208ENST00000597172 SIGIRRQ6IA17 410 aa7.88□□□□□ -1.15
TRIM28-208ENST00000597172 Q6P435 159 aa7.88□□□□□ -1.15
TRIM28-208ENST00000597172 DNM1P46Q6ZS02 220 aa7.88□□□□□ -1.15
TRIM28-208ENST00000597172 CCDC190Q86UF4 302 aa7.88□□□□□ -1.15
TRIM28-208ENST00000597172 LRRC28Q86X40 367 aaPredicted RBP7.88□□□□□ -1.15
TRIM28-208ENST00000597172 Q8IYB0 196 aa7.88□□□□□ -1.15
TRIM28-208ENST00000597172 BOLLQ8N9W6 283 aaKnown RBP7.88□□□□□ -1.15
TRIM28-208ENST00000597172 OR11L1Q8NGX0 322 aa7.88□□□□□ -1.15
TRIM28-208ENST00000597172 RAB40AQ8WXH6 277 aa7.88□□□□□ -1.15
TRIM28-208ENST00000597172 RDH5Q92781 318 aa7.88□□□□□ -1.15
TRIM28-208ENST00000597172 EMG1Q92979 244 aaKnown RBP7.88□□□□□ -1.15
TRIM28-208ENST00000597172 MRPS24Q96EL2 167 aaKnown RBP7.88□□□□□ -1.15
TRIM28-208ENST00000597172 TMEM59Q9BXS4 323 aa7.88□□□□□ -1.15
TRIM28-208ENST00000597172 CST11Q9H112 138 aa7.88□□□□□ -1.15
TRIM28-208ENST00000597172 ATG5Q9H1Y0 275 aa7.88□□□□□ -1.15
TRIM28-208ENST00000597172 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP7.88□□□□□ -1.15
TRIM28-208ENST00000597172 PCDHB16Q9NRJ7 776 aa7.88□□□□□ -1.15
TRIM28-208ENST00000597172 ST3GAL6Q9Y274 331 aa7.88□□□□□ -1.15
TRIM28-208ENST00000597172 EPPK1P58107 5090 aaKnown RBP7.88□□□□□ -1.15
TRIM28-208ENST00000597172 FAM25AB3EWG3 89 aa7.87□□□□□ -1.15
TRIM28-208ENST00000597172 FAM25CB3EWG5 89 aa7.87□□□□□ -1.15
TRIM28-208ENST00000597172 FAM25GB3EWG6 89 aa7.87□□□□□ -1.15
TRIM28-208ENST00000597172 IFNL4K9M1U5 179 aa7.87□□□□□ -1.15
TRIM28-208ENST00000597172 XRCC3O43542 346 aa7.87□□□□□ -1.15
TRIM28-208ENST00000597172 PSG2P11465 335 aa7.87□□□□□ -1.15
TRIM28-208ENST00000597172 AMY2BP19961 511 aa7.87□□□□□ -1.15
TRIM28-208ENST00000597172 CDK2P24941 298 aa7.87□□□□□ -1.15
TRIM28-208ENST00000597172 CD80P33681 288 aa7.87□□□□□ -1.15
TRIM28-208ENST00000597172 PITPNBP48739 271 aa7.87□□□□□ -1.15
TRIM28-208ENST00000597172 SNU13P55769 128 aaKnown RBP7.87□□□□□ -1.15
TRIM28-208ENST00000597172 RBM11P57052 281 aaKnown RBP7.87□□□□□ -1.15
TRIM28-208ENST00000597172 MADCAM1Q13477 382 aa7.87□□□□□ -1.15
TRIM28-208ENST00000597172 HFEQ30201 348 aa7.87□□□□□ -1.15
TRIM28-208ENST00000597172 PLAC9Q5JTB6 97 aa7.87□□□□□ -1.15
TRIM28-208ENST00000597172 TEX36Q5VZQ5 186 aa7.87□□□□□ -1.15
TRIM28-208ENST00000597172 CNIH2Q6PI25 160 aa7.87□□□□□ -1.15
TRIM28-208ENST00000597172 LINC00299Q6ZSB3 139 aa7.87□□□□□ -1.15
TRIM28-208ENST00000597172 IZUMO1Q8IYV9 350 aa7.87□□□□□ -1.15
TRIM28-208ENST00000597172 OR4M1Q8NGD0 313 aa7.87□□□□□ -1.15
TRIM28-208ENST00000597172 OR5T2Q8NGG2 359 aa7.87□□□□□ -1.15
TRIM28-208ENST00000597172 ZFAND2BQ8WV99 257 aa7.87□□□□□ -1.15
TRIM28-208ENST00000597172 S100A16Q96FQ6 103 aaKnown RBP7.87□□□□□ -1.15
TRIM28-208ENST00000597172 DIRAS2Q96HU8 199 aa7.87□□□□□ -1.15
TRIM28-208ENST00000597172 URM1Q9BTM9 101 aaKnown RBP7.87□□□□□ -1.15
TRIM28-208ENST00000597172 CHODLQ9H9P2 273 aa7.87□□□□□ -1.15
TRIM28-208ENST00000597172 TMEM165Q9HC07 324 aa7.87□□□□□ -1.15
TRIM28-208ENST00000597172 NLKQ9UBE8 527 aa7.87□□□□□ -1.15
TRIM28-208ENST00000597172 WIPI2Q9Y4P8 454 aa7.87□□□□□ -1.15
TRIM28-208ENST00000597172 NPTNQ9Y639 398 aa7.87□□□□□ -1.15
TRIM28-208ENST00000597172 IGKV1D-17A0A075B6S4 117 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 PPIAL4EA0A075B759 164 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 A0A096LNT2 108 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 TRAV24A0A0B4J272 114 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 TMEM89A2RUT3 159 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 METTL21EPA6NDL7 271 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 OOEPA6NGQ2 149 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 RFPL4AA6NLU0 287 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 LRRC30A6NM36 301 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 PPIAL4DF5H284 164 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 RFPL4AL1F8VTS6 287 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 LGALS8O00214 317 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 KNG1P01042 644 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms