RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 EDDM3AQ14507 147 aa13.24□□□□□ -0.29
TRIM28-206ENST00000595974 GRK1Q15835 563 aa13.24□□□□□ -0.29
TRIM28-206ENST00000595974 MIDNQ504T8 468 aa13.24□□□□□ -0.29
TRIM28-206ENST00000595974 YIF1BQ5BJH7 314 aa13.24□□□□□ -0.29
TRIM28-206ENST00000595974 C11orf42Q8N5U0 333 aa13.24□□□□□ -0.29
TRIM28-206ENST00000595974 C3orf56Q8N813 242 aa13.24□□□□□ -0.29
TRIM28-206ENST00000595974 PXT1Q8NFP0 134 aa13.24□□□□□ -0.29
TRIM28-206ENST00000595974 OR52N4Q8NGI2 321 aa13.24□□□□□ -0.29
TRIM28-206ENST00000595974 OR51A2Q8NGJ7 313 aa13.24□□□□□ -0.29
TRIM28-206ENST00000595974 GHSRQ92847 366 aa13.24□□□□□ -0.29
TRIM28-206ENST00000595974 PGLYRP3Q96LB9 341 aa13.24□□□□□ -0.29
TRIM28-206ENST00000595974 GPER1Q99527 375 aa13.24□□□□□ -0.29
TRIM28-206ENST00000595974 CHIAQ9BZP6 476 aa13.24□□□□□ -0.29
TRIM28-206ENST00000595974 DPAGT1Q9H3H5 408 aa13.24□□□□□ -0.29
TRIM28-206ENST00000595974 hADV38S2A0JD32 116 aa13.23□□□□□ -0.29
TRIM28-206ENST00000595974 C17orf98A8MV24 154 aa13.23□□□□□ -0.29
TRIM28-206ENST00000595974 GABRPO00591 440 aa13.23□□□□□ -0.29
TRIM28-206ENST00000595974 OR2H2O95918 312 aa13.23□□□□□ -0.29
TRIM28-206ENST00000595974 IGHV4-59P01825 116 aa13.23□□□□□ -0.29
TRIM28-206ENST00000595974 ALDOBP05062 364 aa13.23□□□□□ -0.29
TRIM28-206ENST00000595974 ZNF728P0DKX0 622 aa13.23□□□□□ -0.29
TRIM28-206ENST00000595974 CALCBP10092 127 aa13.23□□□□□ -0.29
TRIM28-206ENST00000595974 CFPP27918 469 aa13.23□□□□□ -0.29
TRIM28-206ENST00000595974 C21orf33P30042 268 aaPredicted RBP13.23□□□□□ -0.29
TRIM28-206ENST00000595974 IER3P46695 156 aa13.23□□□□□ -0.29
TRIM28-206ENST00000595974 OR3A1P47881 315 aa13.23□□□□□ -0.29
TRIM28-206ENST00000595974 MTNR1BP49286 362 aa13.23□□□□□ -0.29
TRIM28-206ENST00000595974 DLX6P56179 175 aa13.23□□□□□ -0.29
TRIM28-206ENST00000595974 Q499Y3 187 aa13.23□□□□□ -0.29
TRIM28-206ENST00000595974 PNKDQ8N490 385 aa13.23□□□□□ -0.29
TRIM28-206ENST00000595974 ZFP41Q8N8Y5 198 aa13.23□□□□□ -0.29
TRIM28-206ENST00000595974 CHST4Q8NCG5 386 aa13.23□□□□□ -0.29
TRIM28-206ENST00000595974 OR13C5Q8NGS8 318 aa13.23□□□□□ -0.29
TRIM28-206ENST00000595974 TNFAIP8L1Q8WVP5 186 aa13.23□□□□□ -0.29
TRIM28-206ENST00000595974 CHST6Q9GZX3 395 aa13.23□□□□□ -0.29
TRIM28-206ENST00000595974 TMEM138Q9NPI0 162 aa13.23□□□□□ -0.29
TRIM28-206ENST00000595974 TNFRSF19Q9NS68 423 aa13.23□□□□□ -0.29
TRIM28-206ENST00000595974 ERGIC3Q9Y282 383 aa13.23□□□□□ -0.29
TRIM28-206ENST00000595974 LINC00312Q9Y6C7 94 aa13.23□□□□□ -0.29
TRIM28-206ENST00000595974 BTBD17A6NE02 478 aa13.22□□□□□ -0.29
TRIM28-206ENST00000595974 FAM181BA6NEQ2 426 aa13.22□□□□□ -0.29
TRIM28-206ENST00000595974 H0YHG0 523 aa13.22□□□□□ -0.29
TRIM28-206ENST00000595974 SIRPB1O00241 398 aa13.22□□□□□ -0.29
TRIM28-206ENST00000595974 CD1AP06126 327 aa13.22□□□□□ -0.29
TRIM28-206ENST00000595974 CDK1P06493 297 aa13.22□□□□□ -0.29
TRIM28-206ENST00000595974 ZNF44P15621 663 aa13.22□□□□□ -0.29
TRIM28-206ENST00000595974 FSTP19883 344 aa13.22□□□□□ -0.29
TRIM28-206ENST00000595974 LMO1P25800 156 aa13.22□□□□□ -0.29
TRIM28-206ENST00000595974 ERP29P30040 261 aaKnown RBP13.22□□□□□ -0.29
TRIM28-206ENST00000595974 RPS11P62280 158 aaKnown RBP eCLIP13.22□□□□□ -0.29
TRIM28-206ENST00000595974 BDH1Q02338 343 aa13.22□□□□□ -0.29
TRIM28-206ENST00000595974 C6orf141Q5SZD1 244 aa13.22□□□□□ -0.29
TRIM28-206ENST00000595974 DDI2Q5TDH0 399 aa13.22□□□□□ -0.29
TRIM28-206ENST00000595974 RNLSQ5VYX0 342 aa13.22□□□□□ -0.29
TRIM28-206ENST00000595974 ELP2Q6IA86 826 aa13.22□□□□□ -0.29
TRIM28-206ENST00000595974 TCF23Q7RTU1 214 aa13.22□□□□□ -0.29
TRIM28-206ENST00000595974 SATL1Q86VE3 508 aa13.22□□□□□ -0.29
TRIM28-206ENST00000595974 NANOGP1Q8N7R0 232 aa13.22□□□□□ -0.29
TRIM28-206ENST00000595974 OR4S1Q8NGB4 309 aa13.22□□□□□ -0.29
TRIM28-206ENST00000595974 DYRK2Q92630 601 aa13.22□□□□□ -0.29
TRIM28-206ENST00000595974 ZNF714Q96N38 554 aa13.22□□□□□ -0.29
TRIM28-206ENST00000595974 CKLFQ9UBR5 152 aa13.22□□□□□ -0.29
TRIM28-206ENST00000595974 FBN3Q75N90 2809 aa13.21□□□□□ -0.29
TRIM28-206ENST00000595974 FUOMA2VDF0 154 aa13.21□□□□□ -0.29
TRIM28-206ENST00000595974 CRYBA1P05813 215 aa13.21□□□□□ -0.29
TRIM28-206ENST00000595974 CSN2P05814 226 aa13.21□□□□□ -0.29
TRIM28-206ENST00000595974 IGFBP3P17936 291 aaPredicted RBP13.21□□□□□ -0.29
TRIM28-206ENST00000595974 BDKRB2P30411 391 aa13.21□□□□□ -0.29
TRIM28-206ENST00000595974 P2RX3P56373 397 aa13.21□□□□□ -0.29
TRIM28-206ENST00000595974 RIPK1Q13546 671 aa13.21□□□□□ -0.29
TRIM28-206ENST00000595974 ZNF782Q6ZMW2 699 aaPredicted RBP13.21□□□□□ -0.29
TRIM28-206ENST00000595974 TPRX1Q8N7U7 411 aa13.21□□□□□ -0.29
TRIM28-206ENST00000595974 BEND2Q8NDZ0 799 aa13.21□□□□□ -0.29
TRIM28-206ENST00000595974 OR5R1Q8NH85 324 aa13.21□□□□□ -0.29
TRIM28-206ENST00000595974 THRSPQ92748 146 aa13.21□□□□□ -0.29
TRIM28-206ENST00000595974 MYDGFQ969H8 173 aa13.21□□□□□ -0.29
TRIM28-206ENST00000595974 MND1Q9BWT6 205 aa13.21□□□□□ -0.29
TRIM28-206ENST00000595974 ANKRD60Q9BZ19 345 aa13.21□□□□□ -0.29
TRIM28-206ENST00000595974 FAM192AQ9GZU8 254 aa13.21□□□□□ -0.29
TRIM28-206ENST00000595974 SCN3BQ9NY72 215 aa13.21□□□□□ -0.29
TRIM28-206ENST00000595974 PNMA8CA0A1B0GUJ8 204 aa13.2□□□□□ -0.3
TRIM28-206ENST00000595974 GPR137BO60478 399 aa13.2□□□□□ -0.3
TRIM28-206ENST00000595974 GPX5O75715 221 aa13.2□□□□□ -0.3
TRIM28-206ENST00000595974 IGHV1-8P0DP01 117 aa13.2□□□□□ -0.3
TRIM28-206ENST00000595974 CELP19835 753 aa13.2□□□□□ -0.3
TRIM28-206ENST00000595974 MYF6P23409 242 aa13.2□□□□□ -0.3
TRIM28-206ENST00000595974 COX7A1P24310 79 aa13.2□□□□□ -0.3
TRIM28-206ENST00000595974 ZNF93P35789 620 aaPredicted RBP13.2□□□□□ -0.3
TRIM28-206ENST00000595974 PTGFRP43088 359 aa13.2□□□□□ -0.3
TRIM28-206ENST00000595974 HSPA13P48723 471 aa13.2□□□□□ -0.3
TRIM28-206ENST00000595974 IL13RA2Q14627 380 aa13.2□□□□□ -0.3
TRIM28-206ENST00000595974 RSU1Q15404 277 aa13.2□□□□□ -0.3
TRIM28-206ENST00000595974 Q6P435 159 aa13.2□□□□□ -0.3
TRIM28-206ENST00000595974 ASCL4Q6XD76 172 aa13.2□□□□□ -0.3
TRIM28-206ENST00000595974 Q8NFD4 153 aa13.2□□□□□ -0.3
TRIM28-206ENST00000595974 OR51T1Q8NGJ9 327 aa13.2□□□□□ -0.3
TRIM28-206ENST00000595974 OR13D1Q8NGV5 346 aa13.2□□□□□ -0.3
TRIM28-206ENST00000595974 OR14A2Q96R54 314 aa13.2□□□□□ -0.3
TRIM28-206ENST00000595974 CDCA4Q9BXL8 241 aa13.2□□□□□ -0.3
TRIM28-206ENST00000595974 PPA2Q9H2U2 334 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms