RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 RIIAD1A6NNX1 92 aa9.51□□□□□ -0.89
CLK3-226ENST00000569406 NUPR1O60356 82 aa9.51□□□□□ -0.89
CLK3-226ENST00000569406 PET100P0DJ07 73 aa9.51□□□□□ -0.89
CLK3-226ENST00000569406 ANOS1P23352 680 aa9.51□□□□□ -0.89
CLK3-226ENST00000569406 CSNK1A1P48729 337 aa9.51□□□□□ -0.89
CLK3-226ENST00000569406 BLKP51451 505 aa9.51□□□□□ -0.89
CLK3-226ENST00000569406 ZNF83P51522 516 aa9.51□□□□□ -0.89
CLK3-226ENST00000569406 ABHD17CQ6PCB6 329 aa9.51□□□□□ -0.89
CLK3-226ENST00000569406 CD300LDQ6UXZ3 194 aa9.51□□□□□ -0.89
CLK3-226ENST00000569406 VN1R4Q7Z5H5 301 aa9.51□□□□□ -0.89
CLK3-226ENST00000569406 ZC2HC1AQ96GY0 325 aa9.51□□□□□ -0.89
CLK3-226ENST00000569406 OR2T8A6NH00 312 aa9.5□□□□□ -0.89
CLK3-226ENST00000569406 SHISA7A6NL88 538 aa9.5□□□□□ -0.89
CLK3-226ENST00000569406 P2RX6O15547 441 aa9.5□□□□□ -0.89
CLK3-226ENST00000569406 CALCBP10092 127 aa9.5□□□□□ -0.89
CLK3-226ENST00000569406 FOLR1P15328 257 aa9.5□□□□□ -0.89
CLK3-226ENST00000569406 KRTDAPP60985 99 aa9.5□□□□□ -0.89
CLK3-226ENST00000569406 MORN2Q502X0 79 aa9.5□□□□□ -0.89
CLK3-226ENST00000569406 FBXW12Q6X9E4 464 aa9.5□□□□□ -0.89
CLK3-226ENST00000569406 ASB10Q8WXI3 467 aa9.5□□□□□ -0.89
CLK3-226ENST00000569406 STARD4Q96DR4 205 aa9.5□□□□□ -0.89
CLK3-226ENST00000569406 SMIM19Q96E16 107 aa9.5□□□□□ -0.89
CLK3-226ENST00000569406 TIMM29Q9BSF4 260 aa9.5□□□□□ -0.89
CLK3-226ENST00000569406 ELL3Q9HB65 397 aaPredicted RBP9.5□□□□□ -0.89
CLK3-226ENST00000569406 IKZF2Q9UKS7 526 aa9.5□□□□□ -0.89
CLK3-226ENST00000569406 BRWD1Q9NSI6 2320 aa9.5□□□□□ -0.89
CLK3-226ENST00000569406 HYPMO75409 117 aa9.5□□□□□ -0.89
CLK3-226ENST00000569406 TTRP02766 147 aa9.5□□□□□ -0.89
CLK3-226ENST00000569406 TMEM225BP0DP42 221 aa9.5□□□□□ -0.89
CLK3-226ENST00000569406 CDKN2AP42771 156 aaKnown RBP9.5□□□□□ -0.89
CLK3-226ENST00000569406 DLX2Q07687 328 aaPredicted RBP9.5□□□□□ -0.89
CLK3-226ENST00000569406 RPL22L1Q6P5R6 122 aaKnown RBP9.5□□□□□ -0.89
CLK3-226ENST00000569406 OPN5Q6U736 354 aa9.5□□□□□ -0.89
CLK3-226ENST00000569406 LRRC69Q6ZNQ3 347 aa9.5□□□□□ -0.89
CLK3-226ENST00000569406 SLC16A9Q7RTY1 509 aa9.5□□□□□ -0.89
CLK3-226ENST00000569406 OR10G6Q8NH81 332 aa9.5□□□□□ -0.89
CLK3-226ENST00000569406 S1PR5Q9H228 398 aa9.5□□□□□ -0.89
CLK3-226ENST00000569406 TBC1D29Q9UFV1 150 aa9.5□□□□□ -0.89
CLK3-226ENST00000569406 H0Y8X5 98 aa9.5□□□□□ -0.89
CLK3-226ENST00000569406 CCNOP22674 350 aa9.5□□□□□ -0.89
CLK3-226ENST00000569406 EMP2P54851 167 aa9.5□□□□□ -0.89
CLK3-226ENST00000569406 PMP22Q01453 160 aa9.5□□□□□ -0.89
CLK3-226ENST00000569406 ZNF85Q03923 595 aa9.5□□□□□ -0.89
CLK3-226ENST00000569406 CDK5R1Q15078 307 aa9.5□□□□□ -0.89
CLK3-226ENST00000569406 ZNF761Q86XN6 746 aaPredicted RBP9.5□□□□□ -0.89
CLK3-226ENST00000569406 CCL4L1Q8NHW4 92 aa9.5□□□□□ -0.89
CLK3-226ENST00000569406 CMTM2Q8TAZ6 248 aa9.5□□□□□ -0.89
CLK3-226ENST00000569406 TMEM170AQ8WVE7 144 aa9.5□□□□□ -0.89
CLK3-226ENST00000569406 GABRG3Q99928 467 aa9.5□□□□□ -0.89
CLK3-226ENST00000569406 CLEC1BQ9P126 229 aa9.5□□□□□ -0.89
CLK3-226ENST00000569406 ST6GALNAC2Q9UJ37 374 aa9.5□□□□□ -0.89
CLK3-226ENST00000569406 FAM186AA6NE01 2351 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 STK17BO94768 372 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 CSNK2A2P19784 350 aaPredicted RBP9.49□□□□□ -0.89
CLK3-226ENST00000569406 HIST1H1TP22492 207 aaPredicted RBP9.49□□□□□ -0.89
CLK3-226ENST00000569406 CSNK2A1P68400 391 aaPredicted RBP9.49□□□□□ -0.89
CLK3-226ENST00000569406 SIRPAP78324 504 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 BAXQ07812 192 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 SQSTM1Q13501 440 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 EIPR1Q53HC9 387 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 Q6ZWC4 215 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 TMEM123Q8N131 208 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 FER1L6-AS1Q8NA97 138 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 CSNK2A3Q8NEV1 391 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 OR1K1Q8NGR3 316 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 ADOQ96SZ5 270 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 P4HTMQ9NXG6 502 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 SPACA6W5XKT8 324 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 PPIAL4EA0A075B759 164 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 BORCS7-ASMTA0A0B4J1R7 106 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 PPIAL4CA0A0B4J2A2 164 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 A0A1W2PQU0 124 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 PPIAL4DF5H284 164 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 K7EQM0 130 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 OR10J4P0C629 311 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 PPIAL4FP0DN26 164 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 ACOT6Q3I5F7 207 aaPredicted RBP9.49□□□□□ -0.89
CLK3-226ENST00000569406 CALHM1Q8IU99 346 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 ZMYND19Q96E35 227 aaPredicted RBP9.49□□□□□ -0.89
CLK3-226ENST00000569406 OR5B12Q96R08 314 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 BCL2L10Q9HD36 194 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 THYN1Q9P016 225 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 LSM5Q9Y4Y9 91 aaKnown RBP9.49□□□□□ -0.89
CLK3-226ENST00000569406 G3V4G9 280 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 H7BYZ3 331 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 J3QRE1 110 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 HAND1O96004 215 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 ASCL1P50553 236 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 RND2P52198 227 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 RPS11P62280 158 aaKnown RBP eCLIP9.49□□□□□ -0.89
CLK3-226ENST00000569406 RHOGP84095 191 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 PLAURQ03405 335 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 C5orf64Q2M2E5 130 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 HLA-BQ31612 363 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 NUP43Q8NFH3 380 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 OR4B1Q8NGF8 309 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 TMEM255BQ8WV15 326 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 PELI1Q96FA3 418 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 SAMD10Q9BYL1 202 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 C12orf49Q9H741 205 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms