RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 SMIM15Q7Z3B0 74 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 GLT6D1Q7Z4J2 308 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 NT5DC3Q86UY8 548 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 P2RY8Q86VZ1 359 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 HOGA1Q86XE5 327 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 LRRC25Q8N386 305 aaPredicted RBP2.36□□□□□ -2.03
VPS35-209ENST00000568642 ZADH2Q8N4Q0 377 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 CLDN22Q8N7P3 220 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 OR13G1Q8NGZ3 307 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 SGMS2Q8NHU3 365 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 FLVCR1-AS1Q8TAF5 88 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 SRSF12Q8WXF0 261 aaKnown RBP2.36□□□□□ -2.03
VPS35-209ENST00000568642 CHCHD10Q8WYQ3 142 aaPredicted RBP2.36□□□□□ -2.03
VPS35-209ENST00000568642 TMEM54Q969K7 222 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 FGGYQ96C11 551 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 NSL1Q96IY1 281 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 PDCD1LG2Q9BQ51 273 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 TMEM208Q9BTX3 173 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 NUDT9Q9BW91 350 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 KRTAP4-4Q9BYR3 166 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 ULBP1Q9BZM6 244 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 FAM107BQ9H098 131 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 RNF167Q9H6Y7 350 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 MYOZ1Q9NP98 299 aaPredicted RBP2.36□□□□□ -2.03
VPS35-209ENST00000568642 RGS18Q9NS28 235 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 ABCC13Q9NSE7 274 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 AURKAIP1Q9NWT8 199 aaPredicted RBP2.36□□□□□ -2.03
VPS35-209ENST00000568642 NDE1Q9NXR1 346 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 TMEM181Q9P2C4 612 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 SEC14L4Q9UDX3 406 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 CD84Q9UIB8 345 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 VAX2Q9UIW0 290 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 SAMD4AQ9UPU9 718 aaKnown RBP2.36□□□□□ -2.03
VPS35-209ENST00000568642 ST3GAL6Q9Y274 331 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 BTRCQ9Y297 605 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 TP53TG5Q9Y2B4 290 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 RPL36Q9Y3U8 105 aaKnown RBP2.36□□□□□ -2.03
VPS35-209ENST00000568642 ARL5AQ9Y689 179 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 COL27A1Q8IZC6 1860 aaPredicted RBP2.36□□□□□ -2.03
VPS35-209ENST00000568642 ARID1AO14497 2285 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 NFASCO94856 1347 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 IGSF9BQ9UPX0 1349 aa2.36□□□□□ -2.03
VPS35-209ENST00000568642 KIAA1109Q2LD37 5005 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 DENND4CQ5VZ89 1909 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 BAZ2AQ9UIF9 1905 aaKnown RBP2.35□□□□□ -2.03
VPS35-209ENST00000568642 IGHV3-38A0A0C4DH36 116 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 SMIM35A0A1B0GVV1 85 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 A6NDN8 102 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 CEACAM18A8MTB9 384 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 EVPLLA8MZ36 301 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 LOC110117498-PIK3R3F6TDL0 507 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 LINC01619G3V211 115 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 TMX2-CTNND1H3BSU7 103 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 BUB3O43684 328 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 ENSAO43768 121 aaKnown RBP2.35□□□□□ -2.03
VPS35-209ENST00000568642 SOX15O60248 233 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 ICOSLGO75144 302 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 GPR75O95800 540 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 HCKP08631 526 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 TBPP20226 339 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 TAC1P20366 129 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 SERPINA2P20848 420 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 GPD1P21695 349 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 HTR1EP28566 365 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 NTSP30990 170 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 GPR183P32249 361 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 IFNGR2P38484 337 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 NR4A2P43354 598 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 ACOT2P49753 483 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 PPOXP50336 477 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 CRYBA2P53672 197 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 SUB1P53999 127 aaKnown RBP eCLIP2.35□□□□□ -2.03
VPS35-209ENST00000568642 DLX6P56179 175 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 PEX3P56589 373 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 MXD1Q05195 221 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 IL18R1Q13478 541 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 IRF4Q15306 451 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 LTB4RQ15722 352 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 C17orf58Q2M2W7 97 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 HLA-DRB5Q30154 266 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 ZBED5Q49AG3 693 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 BRMS1LQ5PSV4 323 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 KCTD16Q68DU8 428 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 ALKAL1Q6UXT8 129 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 FOXL2NBQ6ZUU3 175 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 TMEM179Q6ZVK1 233 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 HORMAD1Q86X24 394 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 CLVS1Q8IUQ0 354 aaPredicted RBP2.35□□□□□ -2.03
VPS35-209ENST00000568642 CIARTQ8N365 385 aaPredicted RBP2.35□□□□□ -2.03
VPS35-209ENST00000568642 PNKDQ8N490 385 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 NPWQ8N729 165 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 CCDC112Q8NEF3 446 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 AGAP11Q8TF27 550 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 TRUB1Q8WWH5 349 aaKnown RBP2.35□□□□□ -2.03
VPS35-209ENST00000568642 FRAT1Q92837 279 aaPredicted RBP2.35□□□□□ -2.03
VPS35-209ENST00000568642 PAGE5Q96GU1 130 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 ZNF597Q96LX8 424 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 MED18Q9BUE0 208 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 YTHDF1Q9BYJ9 559 aaKnown RBP2.35□□□□□ -2.03
VPS35-209ENST00000568642 PRSS22Q9GZN4 317 aa2.35□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms