RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, human

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-231	ENST00000568422	CREB3L1	Q96BA8	519 aa		13.52	□□□□□ -0.25
CLN3-231	ENST00000568422	ADAT3	Q96EY9	351 aa	Predicted RBP	13.52	□□□□□ -0.25
CLN3-231	ENST00000568422	OR5M11	Q96RB7	305 aa		13.52	□□□□□ -0.25
CLN3-231	ENST00000568422	OCSTAMP	Q9BR26	566 aa		13.52	□□□□□ -0.25
CLN3-231	ENST00000568422	LIN7B	Q9HAP6	207 aa		13.52	□□□□□ -0.25
CLN3-231	ENST00000568422	HMG20A	Q9NP66	347 aa		13.52	□□□□□ -0.25
CLN3-231	ENST00000568422	TAS2R3	Q9NYW6	316 aa		13.52	□□□□□ -0.25
CLN3-231	ENST00000568422	DPM3	Q9P2X0	92 aa		13.52	□□□□□ -0.25
CLN3-231	ENST00000568422	IL36RN	Q9UBH0	155 aa		13.52	□□□□□ -0.25
CLN3-231	ENST00000568422	NOTCH3	Q9UM47	2321 aa		13.52	□□□□□ -0.25
CLN3-231	ENST00000568422	TRGV10	A0A0A0MS01	117 aa		13.51	□□□□□ -0.25
CLN3-231	ENST00000568422	IGKV1-9	A0A0C4DH69	117 aa		13.51	□□□□□ -0.25
CLN3-231	ENST00000568422	ZNF20	P17024	532 aa		13.51	□□□□□ -0.25
CLN3-231	ENST00000568422	DUSP1	P28562	367 aa		13.51	□□□□□ -0.25
CLN3-231	ENST00000568422	POLR2I	P36954	125 aa	Known RBP	13.51	□□□□□ -0.25
CLN3-231	ENST00000568422	KIR3DL2	P43630	455 aa		13.51	□□□□□ -0.25
CLN3-231	ENST00000568422	OR3A1	P47881	315 aa		13.51	□□□□□ -0.25
CLN3-231	ENST00000568422	LOXL3	P58215	753 aa		13.51	□□□□□ -0.25
CLN3-231	ENST00000568422	CD83	Q01151	205 aa		13.51	□□□□□ -0.25
CLN3-231	ENST00000568422	BDH1	Q02338	343 aa		13.51	□□□□□ -0.25
CLN3-231	ENST00000568422	TP53I3	Q53FA7	332 aa		13.51	□□□□□ -0.25
CLN3-231	ENST00000568422	FDX2	Q6P4F2	183 aa		13.51	□□□□□ -0.25
CLN3-231	ENST00000568422	HEPN1	Q6WQI6	88 aa		13.51	□□□□□ -0.25
CLN3-231	ENST00000568422		Q6ZS46	218 aa		13.51	□□□□□ -0.25
CLN3-231	ENST00000568422	ABHD12	Q8N2K0	398 aa		13.51	□□□□□ -0.25
CLN3-231	ENST00000568422	OR5AU1	Q8NGC0	362 aa		13.51	□□□□□ -0.25
CLN3-231	ENST00000568422	OR4P4	Q8NGL7	312 aa		13.51	□□□□□ -0.25
CLN3-231	ENST00000568422	MRAP	Q8TCY5	172 aa		13.51	□□□□□ -0.25
CLN3-231	ENST00000568422	CAPSL	Q8WWF8	208 aa		13.51	□□□□□ -0.25
CLN3-231	ENST00000568422	STMN2	Q93045	179 aa		13.51	□□□□□ -0.25
CLN3-231	ENST00000568422	FGGY	Q96C11	551 aa		13.51	□□□□□ -0.25
CLN3-231	ENST00000568422	CENPN	Q96H22	339 aa	Predicted RBP	13.51	□□□□□ -0.25
CLN3-231	ENST00000568422	OPALIN	Q96PE5	141 aa		13.51	□□□□□ -0.25
CLN3-231	ENST00000568422	RIBC2	Q9H4K1	309 aa		13.51	□□□□□ -0.25
CLN3-231	ENST00000568422	KIAA2026	Q5HYC2	2103 aa		13.51	□□□□□ -0.25
CLN3-231	ENST00000568422	LEUTX	A8MZ59	168 aa		13.5	□□□□□ -0.25
CLN3-231	ENST00000568422	MT-ND2	P03891	347 aa		13.5	□□□□□ -0.25
CLN3-231	ENST00000568422	CSN2	P05814	226 aa		13.5	□□□□□ -0.25
CLN3-231	ENST00000568422	OCM2	P0CE71	109 aa		13.5	□□□□□ -0.25
CLN3-231	ENST00000568422	OCM	P0CE72	109 aa	Predicted RBP	13.5	□□□□□ -0.25
CLN3-231	ENST00000568422	JUNB	P17275	347 aa	Predicted RBP	13.5	□□□□□ -0.25
CLN3-231	ENST00000568422	LMO1	P25800	156 aa		13.5	□□□□□ -0.25
CLN3-231	ENST00000568422	CEACAM3	P40198	252 aa		13.5	□□□□□ -0.25
CLN3-231	ENST00000568422	CCR9	P51686	369 aa		13.5	□□□□□ -0.25
CLN3-231	ENST00000568422	C1orf146	Q5VVC0	180 aa		13.5	□□□□□ -0.25
CLN3-231	ENST00000568422	CENPV	Q7Z7K6	275 aa	Predicted RBP	13.5	□□□□□ -0.25
CLN3-231	ENST00000568422	CHST4	Q8NCG5	386 aa		13.5	□□□□□ -0.25
CLN3-231	ENST00000568422	WFDC9	Q8NEX5	89 aa		13.5	□□□□□ -0.25
CLN3-231	ENST00000568422	RNF166	Q96A37	237 aa	Predicted RBP	13.5	□□□□□ -0.25
CLN3-231	ENST00000568422	PHF21A	Q96BD5	680 aa		13.5	□□□□□ -0.25
CLN3-231	ENST00000568422	MBOAT4	Q96T53	435 aa		13.5	□□□□□ -0.25
CLN3-231	ENST00000568422	MYCBP	Q99417	103 aa	Predicted RBP	13.5	□□□□□ -0.25
CLN3-231	ENST00000568422	NEK6	Q9HC98	313 aa		13.5	□□□□□ -0.25
CLN3-231	ENST00000568422	EXOSC4	Q9NPD3	245 aa	Known RBP	13.5	□□□□□ -0.25
CLN3-231	ENST00000568422	FRRS1L	Q9P0K9	344 aa		13.5	□□□□□ -0.25
CLN3-231	ENST00000568422	OAZ3	Q9UMX2	235 aa		13.5	□□□□□ -0.25
CLN3-231	ENST00000568422	SIRPB1	O00241	398 aa		13.49	□□□□□ -0.25
CLN3-231	ENST00000568422	MMP23A	O75900	390 aa		13.49	□□□□□ -0.25
CLN3-231	ENST00000568422	ATP5H	O75947	161 aa		13.49	□□□□□ -0.25
CLN3-231	ENST00000568422	KDM4B	O94953	1096 aa		13.49	□□□□□ -0.25
CLN3-231	ENST00000568422	OR2H2	O95918	312 aa		13.49	□□□□□ -0.25
CLN3-231	ENST00000568422	IGLV1-47	P01700	117 aa		13.49	□□□□□ -0.25
CLN3-231	ENST00000568422	RPSA	P08865	295 aa	Known RBP	13.49	□□□□□ -0.25
CLN3-231	ENST00000568422	CD33	P20138	364 aa		13.49	□□□□□ -0.25
CLN3-231	ENST00000568422	CDK2	P24941	298 aa		13.49	□□□□□ -0.25
CLN3-231	ENST00000568422	CD34	P28906	385 aa		13.49	□□□□□ -0.25
CLN3-231	ENST00000568422	SLC25A30	Q5SVS4	291 aa		13.49	□□□□□ -0.25
CLN3-231	ENST00000568422	SAXO1	Q8IYX7	474 aa		13.49	□□□□□ -0.25
CLN3-231	ENST00000568422	COMMD4	Q9H0A8	199 aa		13.49	□□□□□ -0.25
CLN3-231	ENST00000568422	IMPAD1	Q9NX62	359 aa		13.49	□□□□□ -0.25
CLN3-231	ENST00000568422	HHLA2	Q9UM44	414 aa		13.49	□□□□□ -0.25
CLN3-231	ENST00000568422	GSTK1	Q9Y2Q3	226 aa		13.49	□□□□□ -0.25
CLN3-231	ENST00000568422	DAPL1	A0PJW8	107 aa		13.48	□□□□□ -0.25
CLN3-231	ENST00000568422		J3QRE1	110 aa		13.48	□□□□□ -0.25
CLN3-231	ENST00000568422	SLC16A6	O15403	523 aa		13.48	□□□□□ -0.25
CLN3-231	ENST00000568422	ALX3	O95076	343 aa		13.48	□□□□□ -0.25
CLN3-231	ENST00000568422	SNU13	P55769	128 aa	Known RBP	13.48	□□□□□ -0.25
CLN3-231	ENST00000568422	KPNB1	Q14974	876 aa	Known RBP	13.48	□□□□□ -0.25
CLN3-231	ENST00000568422	TMEM95	Q3KNT9	176 aa		13.48	□□□□□ -0.25
CLN3-231	ENST00000568422	PRAMEF5	Q5TYX0	476 aa		13.48	□□□□□ -0.25
CLN3-231	ENST00000568422	MEDAG	Q5VYS4	303 aa		13.48	□□□□□ -0.25
CLN3-231	ENST00000568422	CCDC144NL	Q6NUI1	221 aa		13.48	□□□□□ -0.25
CLN3-231	ENST00000568422	AURKAIP1	Q9NWT8	199 aa	Predicted RBP	13.48	□□□□□ -0.25
CLN3-231	ENST00000568422	SNTN	A6NMZ2	147 aa		13.47	□□□□□ -0.25
CLN3-231	ENST00000568422	OOSP1	A8MZH6	123 aa		13.47	□□□□□ -0.25
CLN3-231	ENST00000568422		M0QZK8	103 aa		13.47	□□□□□ -0.25
CLN3-231	ENST00000568422	TOR1A	O14656	332 aa		13.47	□□□□□ -0.25
CLN3-231	ENST00000568422	OR2F2	O95006	317 aa		13.47	□□□□□ -0.25
CLN3-231	ENST00000568422	HTR1A	P08908	422 aa		13.47	□□□□□ -0.25
CLN3-231	ENST00000568422	CALCB	P10092	127 aa		13.47	□□□□□ -0.25
CLN3-231	ENST00000568422	PF4V1	P10720	104 aa		13.47	□□□□□ -0.25
CLN3-231	ENST00000568422	PTGFR	P43088	359 aa		13.47	□□□□□ -0.25
CLN3-231	ENST00000568422	PRRX1	P54821	245 aa		13.47	□□□□□ -0.25
CLN3-231	ENST00000568422	AES	Q08117	197 aa		13.47	□□□□□ -0.25
CLN3-231	ENST00000568422	OR4D6	Q8NGJ1	314 aa		13.47	□□□□□ -0.25
CLN3-231	ENST00000568422	OR13C3	Q8NGS6	347 aa		13.47	□□□□□ -0.25
CLN3-231	ENST00000568422	MRPL48	Q96GC5	212 aa	Known RBP	13.47	□□□□□ -0.25
CLN3-231	ENST00000568422	HRASLS5	Q96KN8	279 aa		13.47	□□□□□ -0.25
CLN3-231	ENST00000568422	RBM14	Q96PK6	669 aa	Known RBP	13.47	□□□□□ -0.25
CLN3-231	ENST00000568422	SLC25A33	Q9BSK2	321 aa		13.47	□□□□□ -0.25

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