RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 DUSP1P28562 367 aa9.1□□□□□ -0.95
CLK3-222ENST00000568232 CD34P28906 385 aa9.1□□□□□ -0.95
CLK3-222ENST00000568232 BLVRAP53004 296 aa9.1□□□□□ -0.95
CLK3-222ENST00000568232 PRRX1P54821 245 aa9.1□□□□□ -0.95
CLK3-222ENST00000568232 CFHR3Q02985 330 aa9.1□□□□□ -0.95
CLK3-222ENST00000568232 ZNF616Q08AN1 781 aa9.1□□□□□ -0.95
CLK3-222ENST00000568232 HAPLN4Q86UW8 402 aa9.1□□□□□ -0.95
CLK3-222ENST00000568232 IL17DQ8TAD2 202 aa9.1□□□□□ -0.95
CLK3-222ENST00000568232 DLX4Q92988 240 aaPredicted RBP9.1□□□□□ -0.95
CLK3-222ENST00000568232 SLAMF9Q96A28 289 aa9.1□□□□□ -0.95
CLK3-222ENST00000568232 RPEQ96AT9 228 aa9.1□□□□□ -0.95
CLK3-222ENST00000568232 TEAD3Q99594 435 aa9.1□□□□□ -0.95
CLK3-222ENST00000568232 ELAC2Q9BQ52 826 aaKnown RBP9.1□□□□□ -0.95
CLK3-222ENST00000568232 SIKE1Q9BRV8 207 aa9.1□□□□□ -0.95
CLK3-222ENST00000568232 IL20Q9NYY1 176 aa9.1□□□□□ -0.95
CLK3-222ENST00000568232 U3KQV3 271 aa9.1□□□□□ -0.95
CLK3-222ENST00000568232 V9GYQ6 96 aa9.1□□□□□ -0.95
CLK3-222ENST00000568232 A0A0U1RQV5 110 aa9.09□□□□□ -0.95
CLK3-222ENST00000568232 A0A1W2PPI3 338 aa9.09□□□□□ -0.95
CLK3-222ENST00000568232 MAGEA13PA6NCF6 341 aa9.09□□□□□ -0.95
CLK3-222ENST00000568232 NCBP2LA6PVI3 153 aaKnown RBP9.09□□□□□ -0.95
CLK3-222ENST00000568232 A8MZ25 164 aa9.09□□□□□ -0.95
CLK3-222ENST00000568232 SELENOFO60613 162 aa9.09□□□□□ -0.95
CLK3-222ENST00000568232 HAND1O96004 215 aa9.09□□□□□ -0.95
CLK3-222ENST00000568232 IGHG4P01861 327 aa9.09□□□□□ -0.95
CLK3-222ENST00000568232 CALCBP10092 127 aa9.09□□□□□ -0.95
CLK3-222ENST00000568232 PSMB8P28062 276 aa9.09□□□□□ -0.95
CLK3-222ENST00000568232 MTNR1BP49286 362 aa9.09□□□□□ -0.95
CLK3-222ENST00000568232 RASSF2P50749 326 aa9.09□□□□□ -0.95
CLK3-222ENST00000568232 P2RX3P56373 397 aa9.09□□□□□ -0.95
CLK3-222ENST00000568232 IL24Q13007 206 aa9.09□□□□□ -0.95
CLK3-222ENST00000568232 KIAA0141Q14154 515 aaPredicted RBP9.09□□□□□ -0.95
CLK3-222ENST00000568232 KPNB1Q14974 876 aaKnown RBP9.09□□□□□ -0.95
CLK3-222ENST00000568232 METTL21CQ5VZV1 264 aa9.09□□□□□ -0.95
CLK3-222ENST00000568232 SATL1Q86VE3 508 aa9.09□□□□□ -0.95
CLK3-222ENST00000568232 RPP25LQ8N5L8 163 aaKnown RBP9.09□□□□□ -0.95
CLK3-222ENST00000568232 FAM71E2Q8N5Q1 922 aa9.09□□□□□ -0.95
CLK3-222ENST00000568232 RNF148Q8N7C7 305 aa9.09□□□□□ -0.95
CLK3-222ENST00000568232 OTOSQ8NHW6 89 aa9.09□□□□□ -0.95
CLK3-222ENST00000568232 GATAD1Q8WUU5 269 aa9.09□□□□□ -0.95
CLK3-222ENST00000568232 ITFG2Q969R8 447 aa9.09□□□□□ -0.95
CLK3-222ENST00000568232 OTULINQ96BN8 352 aa9.09□□□□□ -0.95
CLK3-222ENST00000568232 RCN3Q96D15 328 aa9.09□□□□□ -0.95
CLK3-222ENST00000568232 HRASLS5Q96KN8 279 aa9.09□□□□□ -0.95
CLK3-222ENST00000568232 CEP19Q96LK0 163 aa9.09□□□□□ -0.95
CLK3-222ENST00000568232 FAM110AQ9BQ89 295 aa9.09□□□□□ -0.95
CLK3-222ENST00000568232 TSSK6Q9BXA6 273 aa9.09□□□□□ -0.95
CLK3-222ENST00000568232 GON7Q9BXV9 100 aa9.09□□□□□ -0.95
CLK3-222ENST00000568232 ABCG5Q9H222 651 aa9.09□□□□□ -0.95
CLK3-222ENST00000568232 KLK15Q9H2R5 256 aa9.09□□□□□ -0.95
CLK3-222ENST00000568232 GAL3ST2Q9H3Q3 398 aa9.09□□□□□ -0.95
CLK3-222ENST00000568232 FAM206AQ9NX38 181 aa9.09□□□□□ -0.95
CLK3-222ENST00000568232 SLC7A11Q9UPY5 501 aa9.09□□□□□ -0.95
CLK3-222ENST00000568232 ABCA13Q86UQ4 5058 aa9.09□□□□□ -0.95
CLK3-222ENST00000568232 TMEM269A0A1B0GVZ9 245 aa9.08□□□□□ -0.96
CLK3-222ENST00000568232 MGST3O14880 152 aa9.08□□□□□ -0.96
CLK3-222ENST00000568232 IGLV3-1P01715 115 aa9.08□□□□□ -0.96
CLK3-222ENST00000568232 ATP6V1B1P15313 513 aa9.08□□□□□ -0.96
CLK3-222ENST00000568232 NFYBP25208 207 aa9.08□□□□□ -0.96
CLK3-222ENST00000568232 IFNGR2P38484 337 aa9.08□□□□□ -0.96
CLK3-222ENST00000568232 OR3A1P47881 315 aa9.08□□□□□ -0.96
CLK3-222ENST00000568232 GLIPR1P48060 266 aa9.08□□□□□ -0.96
CLK3-222ENST00000568232 HCCSP53701 268 aa9.08□□□□□ -0.96
CLK3-222ENST00000568232 SLURP1P55000 103 aa9.08□□□□□ -0.96
CLK3-222ENST00000568232 SNU13P55769 128 aaKnown RBP9.08□□□□□ -0.96
CLK3-222ENST00000568232 SMIM11AP58511 58 aa9.08□□□□□ -0.96
CLK3-222ENST00000568232 CLVS2Q5SYC1 327 aa9.08□□□□□ -0.96
CLK3-222ENST00000568232 TMEM42Q69YG0 159 aa9.08□□□□□ -0.96
CLK3-222ENST00000568232 OR9Q2Q8NGE9 314 aa9.08□□□□□ -0.96
CLK3-222ENST00000568232 OR6Q1Q8NGQ2 317 aa9.08□□□□□ -0.96
CLK3-222ENST00000568232 MYOZ3Q8TDC0 251 aa9.08□□□□□ -0.96
CLK3-222ENST00000568232 LEAP2Q969E1 77 aa9.08□□□□□ -0.96
CLK3-222ENST00000568232 CADM1Q9BY67 442 aaKnown RBP9.08□□□□□ -0.96
CLK3-222ENST00000568232 PKIBQ9C010 78 aa9.08□□□□□ -0.96
CLK3-222ENST00000568232 PBOV1Q9GZY1 135 aa9.08□□□□□ -0.96
CLK3-222ENST00000568232 ALX4Q9H161 411 aaPredicted RBP9.08□□□□□ -0.96
CLK3-222ENST00000568232 TRGV10A0A0A0MS01 117 aa9.07□□□□□ -0.96
CLK3-222ENST00000568232 IGHV3-72A0A0B4J1Y9 119 aa9.07□□□□□ -0.96
CLK3-222ENST00000568232 FAM230AA0A1W2PPH8 454 aa9.07□□□□□ -0.96
CLK3-222ENST00000568232 CNTFRP26992 372 aa9.07□□□□□ -0.96
CLK3-222ENST00000568232 ERP29P30040 261 aaKnown RBP9.07□□□□□ -0.96
CLK3-222ENST00000568232 RRM2P31350 389 aa9.07□□□□□ -0.96
CLK3-222ENST00000568232 LCN1P1Q5VSP4 162 aa9.07□□□□□ -0.96
CLK3-222ENST00000568232 SLX4IPQ5VYV7 408 aa9.07□□□□□ -0.96
CLK3-222ENST00000568232 RPL13AP3Q6NVV1 102 aa9.07□□□□□ -0.96
CLK3-222ENST00000568232 ZNF491Q8N8L2 437 aa9.07□□□□□ -0.96
CLK3-222ENST00000568232 Q8N9W7 124 aa9.07□□□□□ -0.96
CLK3-222ENST00000568232 ARPC1AQ92747 370 aa9.07□□□□□ -0.96
CLK3-222ENST00000568232 CORO2AQ92828 525 aa9.07□□□□□ -0.96
CLK3-222ENST00000568232 EMG1Q92979 244 aaKnown RBP9.07□□□□□ -0.96
CLK3-222ENST00000568232 KCTD7Q96MP8 289 aa9.07□□□□□ -0.96
CLK3-222ENST00000568232 HSPB9Q9BQS6 159 aa9.07□□□□□ -0.96
CLK3-222ENST00000568232 BTBD10Q9BSF8 475 aa9.07□□□□□ -0.96
CLK3-222ENST00000568232 OR51V1Q9H2C8 321 aa9.07□□□□□ -0.96
CLK3-222ENST00000568232 PCDHB16Q9NRJ7 776 aa9.07□□□□□ -0.96
CLK3-222ENST00000568232 ARMC1Q9NVT9 282 aa9.07□□□□□ -0.96
CLK3-222ENST00000568232 ING3Q9NXR8 418 aa9.07□□□□□ -0.96
CLK3-222ENST00000568232 TAS2R3Q9NYW6 316 aa9.07□□□□□ -0.96
CLK3-222ENST00000568232 DNAJB9Q9UBS3 223 aa9.07□□□□□ -0.96
CLK3-222ENST00000568232 AP3M1Q9Y2T2 418 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms