RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, human

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-222	ENST00000566083	FGGY	Q96C11	551 aa		12.02	□□□□□ -0.49
CLN3-222	ENST00000566083	ADAT3	Q96EY9	351 aa	Predicted RBP	12.02	□□□□□ -0.49
CLN3-222	ENST00000566083	HMG20A	Q9NP66	347 aa		12.02	□□□□□ -0.49
CLN3-222	ENST00000566083	EXOSC4	Q9NPD3	245 aa	Known RBP	12.02	□□□□□ -0.49
CLN3-222	ENST00000566083	RBFOX1	Q9NWB1	397 aa	Known RBP	12.02	□□□□□ -0.49
CLN3-222	ENST00000566083	TAS2R3	Q9NYW6	316 aa		12.02	□□□□□ -0.49
CLN3-222	ENST00000566083	KIAA2026	Q5HYC2	2103 aa		12.01	□□□□□ -0.49
CLN3-222	ENST00000566083	PSPN	O60542	156 aa		12.01	□□□□□ -0.49
CLN3-222	ENST00000566083	ENTPD6	O75354	484 aa		12.01	□□□□□ -0.49
CLN3-222	ENST00000566083	ALX3	O95076	343 aa		12.01	□□□□□ -0.49
CLN3-222	ENST00000566083	IGHA1	P01876	353 aa		12.01	□□□□□ -0.49
CLN3-222	ENST00000566083	BCL3	P20749	454 aa		12.01	□□□□□ -0.49
CLN3-222	ENST00000566083	LMO1	P25800	156 aa		12.01	□□□□□ -0.49
CLN3-222	ENST00000566083	CEACAM3	P40198	252 aa		12.01	□□□□□ -0.49
CLN3-222	ENST00000566083	NPBWR2	P48146	333 aa		12.01	□□□□□ -0.49
CLN3-222	ENST00000566083	BEAN1	Q3B7T3	259 aa		12.01	□□□□□ -0.49
CLN3-222	ENST00000566083	SAMD5	Q5TGI4	173 aa		12.01	□□□□□ -0.49
CLN3-222	ENST00000566083	CCBE1	Q6UXH8	406 aa	Predicted RBP	12.01	□□□□□ -0.49
CLN3-222	ENST00000566083	HEPN1	Q6WQI6	88 aa		12.01	□□□□□ -0.49
CLN3-222	ENST00000566083	HAVCR2	Q8TDQ0	301 aa		12.01	□□□□□ -0.49
CLN3-222	ENST00000566083	RNFT2	Q96EX2	444 aa		12.01	□□□□□ -0.49
CLN3-222	ENST00000566083	CPNE2	Q96FN4	548 aa	Predicted RBP	12.01	□□□□□ -0.49
CLN3-222	ENST00000566083	CHST6	Q9GZX3	395 aa		12.01	□□□□□ -0.49
CLN3-222	ENST00000566083	FRRS1L	Q9P0K9	344 aa		12.01	□□□□□ -0.49
CLN3-222	ENST00000566083	DPM3	Q9P2X0	92 aa		12.01	□□□□□ -0.49
CLN3-222	ENST00000566083	HILPDA	Q9Y5L2	63 aa		12.01	□□□□□ -0.49
CLN3-222	ENST00000566083	IGKV1-9	A0A0C4DH69	117 aa		12	□□□□□ -0.49
CLN3-222	ENST00000566083	SAC3D1	A6NKF1	404 aa		12	□□□□□ -0.49
CLN3-222	ENST00000566083	FAM90A22P	A8MWA6	464 aa		12	□□□□□ -0.49
CLN3-222	ENST00000566083	MPZL2	O60487	215 aa		12	□□□□□ -0.49
CLN3-222	ENST00000566083	ALPL	P05186	524 aa		12	□□□□□ -0.49
CLN3-222	ENST00000566083	CSN2	P05814	226 aa		12	□□□□□ -0.49
CLN3-222	ENST00000566083	VDAC2	P45880	294 aa	Predicted RBP	12	□□□□□ -0.49
CLN3-222	ENST00000566083	OR3A1	P47881	315 aa		12	□□□□□ -0.49
CLN3-222	ENST00000566083	BDH1	Q02338	343 aa		12	□□□□□ -0.49
CLN3-222	ENST00000566083	KPNB1	Q14974	876 aa	Known RBP	12	□□□□□ -0.49
CLN3-222	ENST00000566083	ZFP1	Q6P2D0	407 aa		12	□□□□□ -0.49
CLN3-222	ENST00000566083	TCF23	Q7RTU1	214 aa		12	□□□□□ -0.49
CLN3-222	ENST00000566083	TMEM219	Q86XT9	240 aa		12	□□□□□ -0.49
CLN3-222	ENST00000566083	ABHD12	Q8N2K0	398 aa		12	□□□□□ -0.49
CLN3-222	ENST00000566083	OR5D14	Q8NGL3	314 aa		12	□□□□□ -0.49
CLN3-222	ENST00000566083	OR13C3	Q8NGS6	347 aa		12	□□□□□ -0.49
CLN3-222	ENST00000566083	CORO2A	Q92828	525 aa		12	□□□□□ -0.49
CLN3-222	ENST00000566083	WNT10A	Q9GZT5	417 aa		12	□□□□□ -0.49
CLN3-222	ENST00000566083	COMMD4	Q9H0A8	199 aa		12	□□□□□ -0.49
CLN3-222	ENST00000566083	LEUTX	A8MZ59	168 aa		11.99	□□□□□ -0.49
CLN3-222	ENST00000566083		J3QRE1	110 aa		11.99	□□□□□ -0.49
CLN3-222	ENST00000566083	KDM4B	O94953	1096 aa		11.99	□□□□□ -0.49
CLN3-222	ENST00000566083	OR2H2	O95918	312 aa		11.99	□□□□□ -0.49
CLN3-222	ENST00000566083	DBT	P11182	482 aa	Known RBP	11.99	□□□□□ -0.49
CLN3-222	ENST00000566083	DUSP1	P28562	367 aa		11.99	□□□□□ -0.49
CLN3-222	ENST00000566083	ALDH3A2	P51648	485 aa		11.99	□□□□□ -0.49
CLN3-222	ENST00000566083	FBLN7	Q53RD9	439 aa		11.99	□□□□□ -0.49
CLN3-222	ENST00000566083	SYS1	Q8N2H4	156 aa		11.99	□□□□□ -0.49
CLN3-222	ENST00000566083	TPRX1	Q8N7U7	411 aa		11.99	□□□□□ -0.49
CLN3-222	ENST00000566083	OR4D6	Q8NGJ1	314 aa		11.99	□□□□□ -0.49
CLN3-222	ENST00000566083	WIPF2	Q8TF74	440 aa	Predicted RBP	11.99	□□□□□ -0.49
CLN3-222	ENST00000566083	STMN2	Q93045	179 aa		11.99	□□□□□ -0.49
CLN3-222	ENST00000566083	R3HDM4	Q96D70	268 aa		11.99	□□□□□ -0.49
CLN3-222	ENST00000566083		Q96MT0	163 aa		11.99	□□□□□ -0.49
CLN3-222	ENST00000566083	LIN7B	Q9HAP6	207 aa		11.99	□□□□□ -0.49
CLN3-222	ENST00000566083	INPP5E	Q9NRR6	644 aa		11.99	□□□□□ -0.49
CLN3-222	ENST00000566083	EXOG	Q9Y2C4	368 aa	Known RBP	11.99	□□□□□ -0.49
CLN3-222	ENST00000566083	GSTK1	Q9Y2Q3	226 aa		11.99	□□□□□ -0.49
CLN3-222	ENST00000566083	MEX3A	A1L020	520 aa	Known RBP	11.98	□□□□□ -0.49
CLN3-222	ENST00000566083	OOSP1	A8MZH6	123 aa		11.98	□□□□□ -0.49
CLN3-222	ENST00000566083		G3V4G9	280 aa		11.98	□□□□□ -0.49
CLN3-222	ENST00000566083		J3QLW9	94 aa		11.98	□□□□□ -0.49
CLN3-222	ENST00000566083		M0QZK8	103 aa		11.98	□□□□□ -0.49
CLN3-222	ENST00000566083	TOR1A	O14656	332 aa		11.98	□□□□□ -0.49
CLN3-222	ENST00000566083	RRP9	O43818	475 aa	Known RBP	11.98	□□□□□ -0.49
CLN3-222	ENST00000566083	FADS2	O95864	444 aa	Known RBP	11.98	□□□□□ -0.49
CLN3-222	ENST00000566083	ZNF44	P15621	663 aa		11.98	□□□□□ -0.49
CLN3-222	ENST00000566083	ZNF19	P17023	458 aa		11.98	□□□□□ -0.49
CLN3-222	ENST00000566083	CD34	P28906	385 aa		11.98	□□□□□ -0.49
CLN3-222	ENST00000566083	PRRX1	P54821	245 aa		11.98	□□□□□ -0.49
CLN3-222	ENST00000566083	ALKBH1	Q13686	389 aa	Known RBP	11.98	□□□□□ -0.49
CLN3-222	ENST00000566083	NSUN5P1	Q3KNT7	163 aa		11.98	□□□□□ -0.49
CLN3-222	ENST00000566083	LDLRAD2	Q5SZI1	272 aa		11.98	□□□□□ -0.49
CLN3-222	ENST00000566083	CCDC144NL	Q6NUI1	221 aa		11.98	□□□□□ -0.49
CLN3-222	ENST00000566083	SERPINA12	Q8IW75	414 aa		11.98	□□□□□ -0.49
CLN3-222	ENST00000566083	OR4P4	Q8NGL7	312 aa		11.98	□□□□□ -0.49
CLN3-222	ENST00000566083	RNF166	Q96A37	237 aa	Predicted RBP	11.98	□□□□□ -0.49
CLN3-222	ENST00000566083	ZCCHC4	Q9H5U6	513 aa		11.98	□□□□□ -0.49
CLN3-222	ENST00000566083	OR6C3	Q9NZP0	311 aa		11.98	□□□□□ -0.49
CLN3-222	ENST00000566083	IL36RN	Q9UBH0	155 aa		11.98	□□□□□ -0.49
CLN3-222	ENST00000566083	PRKDC	P78527	4128 aa	Known RBP	11.97	□□□□□ -0.49
CLN3-222	ENST00000566083	TMEM212	A6NML5	194 aa		11.97	□□□□□ -0.49
CLN3-222	ENST00000566083	OR4C45	A6NMZ5	311 aa		11.97	□□□□□ -0.49
CLN3-222	ENST00000566083	ZNF729	A6NN14	1252 aa	Predicted RBP	11.97	□□□□□ -0.49
CLN3-222	ENST00000566083	SIRPB1	O00241	398 aa		11.97	□□□□□ -0.49
CLN3-222	ENST00000566083	CD28	P10747	220 aa		11.97	□□□□□ -0.49
CLN3-222	ENST00000566083	CDK2	P24941	298 aa		11.97	□□□□□ -0.49
CLN3-222	ENST00000566083	NANOS3	P60323	173 aa	Known RBP	11.97	□□□□□ -0.49
CLN3-222	ENST00000566083	GALE	Q14376	348 aa		11.97	□□□□□ -0.49
CLN3-222	ENST00000566083	HABP2	Q14520	560 aa	Predicted RBP	11.97	□□□□□ -0.49
CLN3-222	ENST00000566083	ZNF565	Q8N9K5	539 aa		11.97	□□□□□ -0.49
CLN3-222	ENST00000566083	OR13C9	Q8NGT0	318 aa		11.97	□□□□□ -0.49
CLN3-222	ENST00000566083	PELI1	Q96FA3	418 aa		11.97	□□□□□ -0.49
CLN3-222	ENST00000566083	C4orf36	Q96KX1	117 aa		11.97	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms