RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 CORO2AQ92828 525 aa12.01□□□□□ -0.49
CLN3-213ENST00000565047 MALSU1Q96EH3 234 aa12.01□□□□□ -0.49
CLN3-213ENST00000565047 RDH12Q96NR8 316 aa12.01□□□□□ -0.49
CLN3-213ENST00000565047 RHOFQ9HBH0 211 aa12.01□□□□□ -0.49
CLN3-213ENST00000565047 SMPD3Q9NY59 655 aaPredicted RBP12.01□□□□□ -0.49
CLN3-213ENST00000565047 TBL2Q9Y4P3 447 aaKnown RBP12.01□□□□□ -0.49
CLN3-213ENST00000565047 WNK1Q9H4A3 2382 aa12□□□□□ -0.49
CLN3-213ENST00000565047 A0A0G2JK05 382 aa12□□□□□ -0.49
CLN3-213ENST00000565047 SULT1B1O43704 296 aa12□□□□□ -0.49
CLN3-213ENST00000565047 GABRR1P24046 479 aa12□□□□□ -0.49
CLN3-213ENST00000565047 ETV1P50549 477 aa12□□□□□ -0.49
CLN3-213ENST00000565047 RAB13P51153 203 aa12□□□□□ -0.49
CLN3-213ENST00000565047 DYNLT3P51808 116 aa12□□□□□ -0.49
CLN3-213ENST00000565047 P2RX3P56373 397 aa12□□□□□ -0.49
CLN3-213ENST00000565047 EDDM3AQ14507 147 aa12□□□□□ -0.49
CLN3-213ENST00000565047 KISS1Q15726 138 aa12□□□□□ -0.49
CLN3-213ENST00000565047 KLHL22Q53GT1 634 aa12□□□□□ -0.49
CLN3-213ENST00000565047 ZNF691Q5VV52 312 aa12□□□□□ -0.49
CLN3-213ENST00000565047 BAIAP2L2Q6UXY1 529 aa12□□□□□ -0.49
CLN3-213ENST00000565047 Q8NFD4 153 aa12□□□□□ -0.49
CLN3-213ENST00000565047 OR5D18Q8NGL1 313 aa12□□□□□ -0.49
CLN3-213ENST00000565047 OR5D14Q8NGL3 314 aa12□□□□□ -0.49
CLN3-213ENST00000565047 OR13D1Q8NGV5 346 aa12□□□□□ -0.49
CLN3-213ENST00000565047 OR5AK2Q8NH90 309 aa12□□□□□ -0.49
CLN3-213ENST00000565047 MRPL48Q96GC5 212 aaKnown RBP12□□□□□ -0.49
CLN3-213ENST00000565047 RANBP3Q9H6Z4 567 aaPredicted RBP12□□□□□ -0.49
CLN3-213ENST00000565047 GSTK1Q9Y2Q3 226 aa12□□□□□ -0.49
CLN3-213ENST00000565047 SIRT4Q9Y6E7 314 aaPredicted RBP12□□□□□ -0.49
CLN3-213ENST00000565047 A6NDX4 124 aa11.99□□□□□ -0.49
CLN3-213ENST00000565047 SIRPB1O00241 398 aa11.99□□□□□ -0.49
CLN3-213ENST00000565047 TIMM23O14925 209 aa11.99□□□□□ -0.49
CLN3-213ENST00000565047 CLIC3O95833 236 aa11.99□□□□□ -0.49
CLN3-213ENST00000565047 CYB5AP00167 134 aa11.99□□□□□ -0.49
CLN3-213ENST00000565047 ARG1P05089 322 aa11.99□□□□□ -0.49
CLN3-213ENST00000565047 CSN2P05814 226 aa11.99□□□□□ -0.49
CLN3-213ENST00000565047 RPSAP08865 295 aaKnown RBP11.99□□□□□ -0.49
CLN3-213ENST00000565047 CCDC159P0C7I6 412 aa11.99□□□□□ -0.49
CLN3-213ENST00000565047 CGB3P0DN86 165 aa11.99□□□□□ -0.49
CLN3-213ENST00000565047 CGB7P0DN87 165 aa11.99□□□□□ -0.49
CLN3-213ENST00000565047 JUNBP17275 347 aaPredicted RBP11.99□□□□□ -0.49
CLN3-213ENST00000565047 GABRA5P31644 462 aa11.99□□□□□ -0.49
CLN3-213ENST00000565047 LGALS4P56470 323 aa11.99□□□□□ -0.49
CLN3-213ENST00000565047 ADARB1P78563 741 aaKnown RBP11.99□□□□□ -0.49
CLN3-213ENST00000565047 IL18R1Q13478 541 aa11.99□□□□□ -0.49
CLN3-213ENST00000565047 ELP2Q6IA86 826 aa11.99□□□□□ -0.49
CLN3-213ENST00000565047 LAIR2Q6ISS4 152 aa11.99□□□□□ -0.49
CLN3-213ENST00000565047 ASCL4Q6XD76 172 aa11.99□□□□□ -0.49
CLN3-213ENST00000565047 LIAT1Q6ZQX7 453 aa11.99□□□□□ -0.49
CLN3-213ENST00000565047 Q8N2B8 174 aa11.99□□□□□ -0.49
CLN3-213ENST00000565047 ZNF485Q8NCK3 441 aa11.99□□□□□ -0.49
CLN3-213ENST00000565047 OR51A2Q8NGJ7 313 aa11.99□□□□□ -0.49
CLN3-213ENST00000565047 CFHR4Q92496 578 aa11.99□□□□□ -0.49
CLN3-213ENST00000565047 MYCBPQ99417 103 aaPredicted RBP11.99□□□□□ -0.49
CLN3-213ENST00000565047 CDCA4Q9BXL8 241 aa11.99□□□□□ -0.49
CLN3-213ENST00000565047 TMEM133Q9H2Q1 129 aa11.99□□□□□ -0.49
CLN3-213ENST00000565047 TCF7L1Q9HCS4 588 aa11.99□□□□□ -0.49
CLN3-213ENST00000565047 TCF19Q9Y242 345 aa11.99□□□□□ -0.49
CLN3-213ENST00000565047 UBE2J1Q9Y385 318 aaPredicted RBP11.99□□□□□ -0.49
CLN3-213ENST00000565047 SESN1Q9Y6P5 492 aa11.99□□□□□ -0.49
CLN3-213ENST00000565047 IGHV2-26A0A0B4J1V2 119 aa11.98□□□□□ -0.49
CLN3-213ENST00000565047 FAM90A22PA8MWA6 464 aa11.98□□□□□ -0.49
CLN3-213ENST00000565047 M0QZ24 198 aa11.98□□□□□ -0.49
CLN3-213ENST00000565047 SLC33A1O00400 549 aaPredicted RBP11.98□□□□□ -0.49
CLN3-213ENST00000565047 SH2D1BO14796 132 aa11.98□□□□□ -0.49
CLN3-213ENST00000565047 BAG2O95816 211 aa11.98□□□□□ -0.49
CLN3-213ENST00000565047 LALBAP00709 142 aa11.98□□□□□ -0.49
CLN3-213ENST00000565047 GDNFP39905 211 aa11.98□□□□□ -0.49
CLN3-213ENST00000565047 GLIPR1P48060 266 aa11.98□□□□□ -0.49
CLN3-213ENST00000565047 GBX2P52951 348 aaPredicted RBP11.98□□□□□ -0.49
CLN3-213ENST00000565047 SNU13P55769 128 aaKnown RBP11.98□□□□□ -0.49
CLN3-213ENST00000565047 AESQ08117 197 aa11.98□□□□□ -0.49
CLN3-213ENST00000565047 SSX2Q16385 188 aa11.98□□□□□ -0.49
CLN3-213ENST00000565047 ZSCAN26Q16670 478 aa11.98□□□□□ -0.49
CLN3-213ENST00000565047 CCDC58Q4VC31 144 aa11.98□□□□□ -0.49
CLN3-213ENST00000565047 UTF1Q5T230 341 aa11.98□□□□□ -0.49
CLN3-213ENST00000565047 MINOS1Q5TGZ0 78 aa11.98□□□□□ -0.49
CLN3-213ENST00000565047 PXT1Q8NFP0 134 aa11.98□□□□□ -0.49
CLN3-213ENST00000565047 OR4P4Q8NGL7 312 aa11.98□□□□□ -0.49
CLN3-213ENST00000565047 CNIH3Q8TBE1 160 aa11.98□□□□□ -0.49
CLN3-213ENST00000565047 HAVCR2Q8TDQ0 301 aa11.98□□□□□ -0.49
CLN3-213ENST00000565047 WIPF2Q8TF74 440 aaPredicted RBP11.98□□□□□ -0.49
CLN3-213ENST00000565047 COQ2Q96H96 371 aa11.98□□□□□ -0.49
CLN3-213ENST00000565047 MMP27Q9H306 513 aa11.98□□□□□ -0.49
CLN3-213ENST00000565047 ZNF702PQ9H963 129 aa11.98□□□□□ -0.49
CLN3-213ENST00000565047 EXOSC4Q9NPD3 245 aaKnown RBP11.98□□□□□ -0.49
CLN3-213ENST00000565047 MINOS1-NBL1R4GNA1 71 aa11.98□□□□□ -0.49
CLN3-213ENST00000565047 OGG1O15527 345 aa11.97□□□□□ -0.49
CLN3-213ENST00000565047 IGLV1-47P01700 117 aa11.97□□□□□ -0.49
CLN3-213ENST00000565047 DCKP27707 260 aa11.97□□□□□ -0.49
CLN3-213ENST00000565047 OR2G6Q5TZ20 316 aa11.97□□□□□ -0.49
CLN3-213ENST00000565047 RPL22L1Q6P5R6 122 aaKnown RBP11.97□□□□□ -0.49
CLN3-213ENST00000565047 HEPN1Q6WQI6 88 aa11.97□□□□□ -0.49
CLN3-213ENST00000565047 CHST4Q8NCG5 386 aa11.97□□□□□ -0.49
CLN3-213ENST00000565047 OR51T1Q8NGJ9 327 aa11.97□□□□□ -0.49
CLN3-213ENST00000565047 FOXRED1Q96CU9 486 aaPredicted RBP11.97□□□□□ -0.49
CLN3-213ENST00000565047 RAB18Q9NP72 206 aa11.97□□□□□ -0.49
CLN3-213ENST00000565047 SERTAD4Q9NUC0 356 aa11.97□□□□□ -0.49
CLN3-213ENST00000565047 TAS2R3Q9NYW6 316 aa11.97□□□□□ -0.49
CLN3-213ENST00000565047 CLEC2DQ9UHP7 191 aa11.97□□□□□ -0.49
CLN3-213ENST00000565047 GLS2Q9UI32 602 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms