RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 SNHG12Q9BXW3 62 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 ST6GALNAC2Q9UJ37 374 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 ADAMTS5Q9UNA0 930 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 OTOL1A6NHN0 477 aaPredicted RBP5.56□□□□□ -1.52
CLK3-212ENST00000563418 EFSO43281 561 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 EDIL3O43854 480 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 FGF17O60258 216 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 CDC14BO60729 498 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 EN2P19622 333 aaPredicted RBP5.56□□□□□ -1.52
CLK3-212ENST00000563418 OR4X1Q8NH49 305 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 NUDT8Q8WV74 236 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 OR2V2Q96R30 315 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 TMEM70Q9BUB7 260 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 TRBV23OR9-2A0A075B6M9 112 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 NCBP2LA6PVI3 153 aaKnown RBP5.56□□□□□ -1.52
CLK3-212ENST00000563418 CXorf1O96002 111 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 PLGLAQ15195 96 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 ZNF664Q8N3J9 261 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 SPSB2Q99619 263 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 EGLN1Q9GZT9 426 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 PLPP1O14494 284 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 VAMP5O95183 116 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 CD52P31358 61 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 MLF1P58340 268 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 RPS11P62280 158 aaKnown RBP eCLIP5.56□□□□□ -1.52
CLK3-212ENST00000563418 ZFAND6Q6FIF0 208 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 OR52E1Q8NGJ3 308 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 OR5D13Q8NGL4 314 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 OR10AG1Q8NH19 301 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 PPP1R35Q8TAP8 253 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 DEC1Q9P2X7 70 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 TRAV9-2A0A087WT02 112 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 GAGE12BA1L429 117 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 IRF2P14316 349 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 PTGER4P35408 488 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 ID2Q02363 134 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 SMAGPQ0VAQ4 97 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 Q1RN00 199 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 OR1N1Q8NGS0 311 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 RAB37Q96AX2 223 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 CSTL1Q9H114 145 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 B3GAT1Q9P2W7 334 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 PIGLQ9Y2B2 252 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 ZNF256Q9Y2P7 627 aaPredicted RBP5.56□□□□□ -1.52
CLK3-212ENST00000563418 LINC01387J3KSC0 135 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 ADAM20O43506 726 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 SMPD2O60906 423 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 FSTP19883 344 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 NSDHLQ15738 373 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 OR13C6PQ8NH95 151 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 IL1F10Q8WWZ1 152 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 ZNF558Q96NG5 402 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 GUCD1Q96NT3 240 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 CITED1Q99966 193 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 ZNF346Q9UL40 294 aaKnown RBP5.56□□□□□ -1.52
CLK3-212ENST00000563418 TBL2Q9Y4P3 447 aaKnown RBP5.56□□□□□ -1.52
CLK3-212ENST00000563418 PNLIPP16233 465 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 KIR2DS3Q14952 304 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 TGIF1Q15583 401 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 MRPL21Q7Z2W9 205 aaKnown RBP5.56□□□□□ -1.52
CLK3-212ENST00000563418 ABHD3Q8WU67 409 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 METTL7AQ9H8H3 244 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 DENND4AQ7Z401 1863 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 M0QZQ0 153 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 FFAR1O14842 300 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 RER1O15258 196 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 INSM1Q01101 510 aaPredicted RBP5.56□□□□□ -1.52
CLK3-212ENST00000563418 PRTGQ2VWP7 1150 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 TMEM108Q6UXF1 575 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 C17orf78Q8N4C9 275 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 MRGPRX3Q96LB0 322 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 HEYLQ9NQ87 328 aaPredicted RBP5.56□□□□□ -1.52
CLK3-212ENST00000563418 SEMA5BQ9P283 1151 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 CCL15-CCL14A0A0B4J2E2 113 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 PRSS37A4D1T9 235 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 C4orf47A7E2U8 309 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 RBFOX2O43251 390 aaKnown RBP eCLIP5.56□□□□□ -1.52
CLK3-212ENST00000563418 CA1P00915 261 aaPredicted RBP5.56□□□□□ -1.52
CLK3-212ENST00000563418 FCGR3AP08637 254 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 FAM157BP0CG42 384 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 CCL15Q16663 113 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 Q96M85 177 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 GABRG3Q99928 467 aa5.56□□□□□ -1.52
CLK3-212ENST00000563418 C19orf25Q9UFG5 118 aaPredicted RBP5.56□□□□□ -1.52
CLK3-212ENST00000563418 ZBTB32Q9Y2Y4 487 aaPredicted RBP5.56□□□□□ -1.52
CLK3-212ENST00000563418 A0A0B4J2E0 115 aa5.55□□□□□ -1.52
CLK3-212ENST00000563418 TRBV5-4A0A0C4DH59 114 aa5.55□□□□□ -1.52
CLK3-212ENST00000563418 A0A1B0GX12 115 aa5.55□□□□□ -1.52
CLK3-212ENST00000563418 LEPROTL1O95214 131 aa5.55□□□□□ -1.52
CLK3-212ENST00000563418 CEBPBP17676 345 aa5.55□□□□□ -1.52
CLK3-212ENST00000563418 CSRP3P50461 194 aa5.55□□□□□ -1.52
CLK3-212ENST00000563418 FGF8P55075 233 aaPredicted RBP5.55□□□□□ -1.52
CLK3-212ENST00000563418 CLDN18P56856 261 aa5.55□□□□□ -1.52
CLK3-212ENST00000563418 DLX2Q07687 328 aaPredicted RBP5.55□□□□□ -1.52
CLK3-212ENST00000563418 PRSS3P2Q8NHM4 247 aa5.55□□□□□ -1.52
CLK3-212ENST00000563418 SCAMP4Q969E2 229 aa5.55□□□□□ -1.52
CLK3-212ENST00000563418 C19orf53Q9UNZ5 99 aaPredicted RBP5.55□□□□□ -1.52
CLK3-212ENST00000563418 PATJQ8NI35 1801 aa5.55□□□□□ -1.52
CLK3-212ENST00000563418 KCNE1BA0A087WTH5 132 aa5.55□□□□□ -1.52
CLK3-212ENST00000563418 TUSC2O75896 110 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms