RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 WDR74Q6RFH5 385 aaPredicted RBP12.12□□□□□ -0.47
VPS9D1-202ENST00000561976 MUCL1Q96DR8 90 aa12.12□□□□□ -0.47
VPS9D1-202ENST00000561976 MAGT1Q9H0U3 335 aa12.12□□□□□ -0.47
VPS9D1-202ENST00000561976 SMDT1Q9H4I9 107 aa12.12□□□□□ -0.47
VPS9D1-202ENST00000561976 ZNF442Q9H7R0 627 aa12.12□□□□□ -0.47
VPS9D1-202ENST00000561976 UBE2J1Q9Y385 318 aaPredicted RBP12.12□□□□□ -0.47
VPS9D1-202ENST00000561976 LIPGQ9Y5X9 500 aa12.12□□□□□ -0.47
VPS9D1-202ENST00000561976 ASCC3Q8N3C0 2202 aaKnown RBP12.11□□□□□ -0.47
VPS9D1-202ENST00000561976 IGSF23A1L1A6 192 aa12.11□□□□□ -0.47
VPS9D1-202ENST00000561976 WRBO00258 174 aa12.11□□□□□ -0.47
VPS9D1-202ENST00000561976 HSPA12AO43301 675 aa12.11□□□□□ -0.47
VPS9D1-202ENST00000561976 SSSCA1O60232 199 aa12.11□□□□□ -0.47
VPS9D1-202ENST00000561976 HOXA5P20719 270 aa12.11□□□□□ -0.47
VPS9D1-202ENST00000561976 MAS1LP35410 378 aa12.11□□□□□ -0.47
VPS9D1-202ENST00000561976 RND3P61587 244 aa12.11□□□□□ -0.47
VPS9D1-202ENST00000561976 HIST1H3AP68431 136 aa12.11□□□□□ -0.47
VPS9D1-202ENST00000561976 MALLQ13021 153 aa12.11□□□□□ -0.47
VPS9D1-202ENST00000561976 HIKESHIQ53FT3 197 aa12.11□□□□□ -0.47
VPS9D1-202ENST00000561976 OR2B11Q5JQS5 317 aa12.11□□□□□ -0.47
VPS9D1-202ENST00000561976 SPIN3Q5JUX0 258 aa12.11□□□□□ -0.47
VPS9D1-202ENST00000561976 HIST2H3PS2Q5TEC6 136 aa12.11□□□□□ -0.47
VPS9D1-202ENST00000561976 ZNF343Q6P1L6 599 aa12.11□□□□□ -0.47
VPS9D1-202ENST00000561976 SLC25A45Q8N413 288 aa12.11□□□□□ -0.47
VPS9D1-202ENST00000561976 FADS6Q8N9I5 356 aa12.11□□□□□ -0.47
VPS9D1-202ENST00000561976 PAPOLGQ9BWT3 736 aaKnown RBP12.11□□□□□ -0.47
VPS9D1-202ENST00000561976 SLC7A11Q9UPY5 501 aa12.11□□□□□ -0.47
VPS9D1-202ENST00000561976 SLC33A1O00400 549 aaPredicted RBP12.11□□□□□ -0.47
VPS9D1-202ENST00000561976 TP53I11O14683 189 aa12.11□□□□□ -0.47
VPS9D1-202ENST00000561976 NRASP01111 189 aa12.11□□□□□ -0.47
VPS9D1-202ENST00000561976 H3F3AP84243 136 aa12.11□□□□□ -0.47
VPS9D1-202ENST00000561976 Q6ZSR3 168 aa12.11□□□□□ -0.47
VPS9D1-202ENST00000561976 LHFPL2Q6ZUX7 228 aa12.11□□□□□ -0.47
VPS9D1-202ENST00000561976 ZNF695Q8IW36 515 aa12.11□□□□□ -0.47
VPS9D1-202ENST00000561976 MAML2Q8IZL2 1156 aaPredicted RBP12.11□□□□□ -0.47
VPS9D1-202ENST00000561976 BATF2Q8N1L9 274 aa12.11□□□□□ -0.47
VPS9D1-202ENST00000561976 PFDN5Q99471 154 aa12.11□□□□□ -0.47
VPS9D1-202ENST00000561976 SHANK1Q9Y566 2161 aa12.1□□□□□ -0.47
VPS9D1-202ENST00000561976 IGKV1-12A0A0C4DH73 117 aa12.1□□□□□ -0.47
VPS9D1-202ENST00000561976 CCDC163A0A0D9SF12 145 aa12.1□□□□□ -0.47
VPS9D1-202ENST00000561976 ZNF724A8MTY0 619 aa12.1□□□□□ -0.47
VPS9D1-202ENST00000561976 H0YL77 283 aa12.1□□□□□ -0.47
VPS9D1-202ENST00000561976 MPPED1O15442 326 aa12.1□□□□□ -0.47
VPS9D1-202ENST00000561976 IGKV1D-12P01611 117 aa12.1□□□□□ -0.47
VPS9D1-202ENST00000561976 LBX1P52954 281 aa12.1□□□□□ -0.47
VPS9D1-202ENST00000561976 C9orf152Q5JTZ5 239 aa12.1□□□□□ -0.47
VPS9D1-202ENST00000561976 ZNF774Q6NX45 483 aa12.1□□□□□ -0.47
VPS9D1-202ENST00000561976 YPEL4Q96NS1 127 aa12.1□□□□□ -0.47
VPS9D1-202ENST00000561976 DCAF16Q9NXF7 216 aa12.1□□□□□ -0.47
VPS9D1-202ENST00000561976 PPYP01298 95 aa12.1□□□□□ -0.47
VPS9D1-202ENST00000561976 CD63P08962 238 aa12.1□□□□□ -0.47
VPS9D1-202ENST00000561976 CDX1P47902 265 aaPredicted RBP12.1□□□□□ -0.47
VPS9D1-202ENST00000561976 UCP3P55916 312 aa12.1□□□□□ -0.47
VPS9D1-202ENST00000561976 SPSB3Q6PJ21 355 aa12.1□□□□□ -0.47
VPS9D1-202ENST00000561976 ZNF429Q86V71 674 aa12.1□□□□□ -0.47
VPS9D1-202ENST00000561976 TMEM123Q8N131 208 aa12.1□□□□□ -0.47
VPS9D1-202ENST00000561976 TMEM217Q8N7C4 229 aa12.1□□□□□ -0.47
VPS9D1-202ENST00000561976 SMRP1Q8NCR6 262 aa12.1□□□□□ -0.47
VPS9D1-202ENST00000561976 OR5C1Q8NGR4 320 aa12.1□□□□□ -0.47
VPS9D1-202ENST00000561976 INTS12Q96CB8 462 aaKnown RBP12.1□□□□□ -0.47
VPS9D1-202ENST00000561976 SLC25A31Q9H0C2 315 aa12.1□□□□□ -0.47
VPS9D1-202ENST00000561976 PLEKHF2Q9H8W4 249 aa12.1□□□□□ -0.47
VPS9D1-202ENST00000561976 DOK5Q9P104 306 aa12.1□□□□□ -0.47
VPS9D1-202ENST00000561976 DMRT1Q9Y5R6 373 aa12.1□□□□□ -0.47
VPS9D1-202ENST00000561976 WDR87Q6ZQQ6 2873 aa12.1□□□□□ -0.47
VPS9D1-202ENST00000561976 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.09□□□□□ -0.47
VPS9D1-202ENST00000561976 TRDCB7Z8K6 153 aa12.09□□□□□ -0.47
VPS9D1-202ENST00000561976 G3V3Y1 287 aa12.09□□□□□ -0.47
VPS9D1-202ENST00000561976 PITX3O75364 302 aa12.09□□□□□ -0.47
VPS9D1-202ENST00000561976 CST7O76096 145 aa12.09□□□□□ -0.47
VPS9D1-202ENST00000561976 CDS2O95674 445 aa12.09□□□□□ -0.47
VPS9D1-202ENST00000561976 TCN2P20062 427 aa12.09□□□□□ -0.47
VPS9D1-202ENST00000561976 DLK1P80370 383 aa12.09□□□□□ -0.47
VPS9D1-202ENST00000561976 FOXL2NBQ6ZUU3 175 aa12.09□□□□□ -0.47
VPS9D1-202ENST00000561976 GAR1Q9NY12 217 aaKnown RBP12.09□□□□□ -0.47
VPS9D1-202ENST00000561976 C19orf25Q9UFG5 118 aaPredicted RBP12.09□□□□□ -0.47
VPS9D1-202ENST00000561976 CHCHD2Q9Y6H1 151 aaPredicted RBP12.09□□□□□ -0.47
VPS9D1-202ENST00000561976 GATCO43716 136 aaKnown RBP12.09□□□□□ -0.47
VPS9D1-202ENST00000561976 PDCD6O75340 191 aa12.09□□□□□ -0.47
VPS9D1-202ENST00000561976 OR7C1O76099 320 aaPredicted RBP12.09□□□□□ -0.47
VPS9D1-202ENST00000561976 NXPH3O95157 252 aa12.09□□□□□ -0.47
VPS9D1-202ENST00000561976 VAMP5O95183 116 aa12.09□□□□□ -0.47
VPS9D1-202ENST00000561976 SRP19P09132 144 aaKnown RBP12.09□□□□□ -0.47
VPS9D1-202ENST00000561976 PATE4P0C8F1 98 aa12.09□□□□□ -0.47
VPS9D1-202ENST00000561976 SRPXP78539 464 aa12.09□□□□□ -0.47
VPS9D1-202ENST00000561976 PYY3Q5JQD4 70 aa12.09□□□□□ -0.47
VPS9D1-202ENST00000561976 P4HA3Q7Z4N8 544 aa12.09□□□□□ -0.47
VPS9D1-202ENST00000561976 TMEM252Q8N6L7 170 aa12.09□□□□□ -0.47
VPS9D1-202ENST00000561976 ZNF610Q8N9Z0 462 aa12.09□□□□□ -0.47
VPS9D1-202ENST00000561976 Q8WTZ3 238 aa12.09□□□□□ -0.47
VPS9D1-202ENST00000561976 TMEM171Q8WVE6 324 aa12.09□□□□□ -0.47
VPS9D1-202ENST00000561976 KIAA1456Q9P272 454 aa12.09□□□□□ -0.47
VPS9D1-202ENST00000561976 RARRES3Q9UL19 164 aa12.09□□□□□ -0.47
VPS9D1-202ENST00000561976 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.08□□□□□ -0.48
VPS9D1-202ENST00000561976 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.08□□□□□ -0.48
VPS9D1-202ENST00000561976 BTBD17A6NE02 478 aa12.08□□□□□ -0.48
VPS9D1-202ENST00000561976 HSD17B6O14756 317 aa12.08□□□□□ -0.48
VPS9D1-202ENST00000561976 CXCL1P09341 107 aa12.08□□□□□ -0.48
VPS9D1-202ENST00000561976 DYNLT3P51808 116 aa12.08□□□□□ -0.48
VPS9D1-202ENST00000561976 RAB35Q15286 201 aa12.08□□□□□ -0.48
VPS9D1-202ENST00000561976 CXorf66Q5JRM2 361 aaPredicted RBP12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms