RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 ST6GALNAC3Q8NDV1 305 aa10.96□□□□□ -0.65
SNX1-211ENST00000560829 TMEM185AQ8NFB2 350 aa10.96□□□□□ -0.65
SNX1-211ENST00000560829 OR2AK2Q8NG84 335 aa10.96□□□□□ -0.65
SNX1-211ENST00000560829 MARCH1Q8TCQ1 289 aa10.96□□□□□ -0.65
SNX1-211ENST00000560829 DYRK2Q92630 601 aa10.96□□□□□ -0.65
SNX1-211ENST00000560829 HYLS1Q96M11 299 aa10.96□□□□□ -0.65
SNX1-211ENST00000560829 OR2A7Q96R45 310 aa10.96□□□□□ -0.65
SNX1-211ENST00000560829 ZNF286AQ9HBT8 521 aa10.96□□□□□ -0.65
SNX1-211ENST00000560829 MGAT4CQ9UBM8 478 aa10.96□□□□□ -0.65
SNX1-211ENST00000560829 MEMO1Q9Y316 297 aa10.96□□□□□ -0.65
SNX1-211ENST00000560829 MYO7BQ6PIF6 2116 aa10.96□□□□□ -0.66
SNX1-211ENST00000560829 IGLV3-9A0A075B6K5 115 aa10.95□□□□□ -0.66
SNX1-211ENST00000560829 SDCBPO00560 298 aaPredicted RBP10.95□□□□□ -0.66
SNX1-211ENST00000560829 CDIPTO14735 213 aa10.95□□□□□ -0.66
SNX1-211ENST00000560829 GIPP09681 153 aaPredicted RBP10.95□□□□□ -0.66
SNX1-211ENST00000560829 DHODHQ02127 395 aa10.95□□□□□ -0.66
SNX1-211ENST00000560829 MZT1Q08AG7 82 aa10.95□□□□□ -0.66
SNX1-211ENST00000560829 C17orf107Q6ZR85 190 aa10.95□□□□□ -0.66
SNX1-211ENST00000560829 C11orf53Q8IXP5 236 aa10.95□□□□□ -0.66
SNX1-211ENST00000560829 POC1AQ8NBT0 407 aa10.95□□□□□ -0.66
SNX1-211ENST00000560829 RANBP3Q9H6Z4 567 aaPredicted RBP10.95□□□□□ -0.66
SNX1-211ENST00000560829 HES4Q9HCC6 221 aa10.95□□□□□ -0.66
SNX1-211ENST00000560829 CA10Q9NS85 328 aa10.95□□□□□ -0.66
SNX1-211ENST00000560829 NECAP2Q9NVZ3 263 aa10.95□□□□□ -0.66
SNX1-211ENST00000560829 PIPOXQ9P0Z9 390 aa10.95□□□□□ -0.66
SNX1-211ENST00000560829 IGF2RP11717 2491 aa10.95□□□□□ -0.66
SNX1-211ENST00000560829 TRBV6-6A0A0A6YYG2 114 aa10.95□□□□□ -0.66
SNX1-211ENST00000560829 POM121CA8CG34 1229 aa10.95□□□□□ -0.66
SNX1-211ENST00000560829 MCRIP1C9JLW8 97 aa10.95□□□□□ -0.66
SNX1-211ENST00000560829 PTBP3O95758 552 aaKnown RBP10.95□□□□□ -0.66
SNX1-211ENST00000560829 CD40P25942 277 aa10.95□□□□□ -0.66
SNX1-211ENST00000560829 CA7P43166 264 aa10.95□□□□□ -0.66
SNX1-211ENST00000560829 RPS23P62266 143 aaKnown RBP10.95□□□□□ -0.66
SNX1-211ENST00000560829 ZNF146Q15072 292 aa10.95□□□□□ -0.66
SNX1-211ENST00000560829 MPPED2Q15777 294 aa10.95□□□□□ -0.66
SNX1-211ENST00000560829 Q6P435 159 aa10.95□□□□□ -0.66
SNX1-211ENST00000560829 DHRS11Q6UWP2 260 aa10.95□□□□□ -0.66
SNX1-211ENST00000560829 NLRC3Q7RTR2 1065 aa10.95□□□□□ -0.66
SNX1-211ENST00000560829 LYG2Q86SG7 212 aa10.95□□□□□ -0.66
SNX1-211ENST00000560829 C12orf45Q8N5I9 185 aaPredicted RBP10.95□□□□□ -0.66
SNX1-211ENST00000560829 TMEM171Q8WVE6 324 aa10.95□□□□□ -0.66
SNX1-211ENST00000560829 ASB13Q8WXK3 278 aa10.95□□□□□ -0.66
SNX1-211ENST00000560829 DHRS9Q9BPW9 319 aa10.95□□□□□ -0.66
SNX1-211ENST00000560829 RIMS4Q9H426 269 aaPredicted RBP10.95□□□□□ -0.66
SNX1-211ENST00000560829 C5orf66Q9H5L9 145 aa10.95□□□□□ -0.66
SNX1-211ENST00000560829 FZR1Q9UM11 496 aa10.95□□□□□ -0.66
SNX1-211ENST00000560829 TRAV24A0A0B4J272 114 aa10.94□□□□□ -0.66
SNX1-211ENST00000560829 FAM221AA4D161 298 aa10.94□□□□□ -0.66
SNX1-211ENST00000560829 OR5H14A6NHG9 310 aa10.94□□□□□ -0.66
SNX1-211ENST00000560829 SMLR1H3BR10 107 aa10.94□□□□□ -0.66
SNX1-211ENST00000560829 HLA-AP01891 365 aaKnown RBP10.94□□□□□ -0.66
SNX1-211ENST00000560829 GRPP07492 148 aa10.94□□□□□ -0.66
SNX1-211ENST00000560829 OR5H8P0DN80 308 aa10.94□□□□□ -0.66
SNX1-211ENST00000560829 SFTPCP11686 197 aa10.94□□□□□ -0.66
SNX1-211ENST00000560829 DUSP1P28562 367 aa10.94□□□□□ -0.66
SNX1-211ENST00000560829 NPY4RP50391 375 aa10.94□□□□□ -0.66
SNX1-211ENST00000560829 CASP6P55212 293 aa10.94□□□□□ -0.66
SNX1-211ENST00000560829 PPP1R1AQ13522 171 aa10.94□□□□□ -0.66
SNX1-211ENST00000560829 RBM39Q14498 530 aaKnown RBP10.94□□□□□ -0.66
SNX1-211ENST00000560829 SPIN3Q5JUX0 258 aa10.94□□□□□ -0.66
SNX1-211ENST00000560829 SHEQ5VZ18 495 aa10.94□□□□□ -0.66
SNX1-211ENST00000560829 TMEM108Q6UXF1 575 aa10.94□□□□□ -0.66
SNX1-211ENST00000560829 SUMF2Q8NBJ7 301 aa10.94□□□□□ -0.66
SNX1-211ENST00000560829 ADAD2Q8NCV1 583 aaKnown RBP10.94□□□□□ -0.66
SNX1-211ENST00000560829 NUP37Q8NFH4 326 aa10.94□□□□□ -0.66
SNX1-211ENST00000560829 ZFAND1Q8TCF1 268 aa10.94□□□□□ -0.66
SNX1-211ENST00000560829 SVILO95425 2214 aa10.94□□□□□ -0.66
SNX1-211ENST00000560829 SPTBN4Q9H254 2564 aa10.94□□□□□ -0.66
SNX1-211ENST00000560829 TRGV8A0A0C4DH27 118 aa10.93□□□□□ -0.66
SNX1-211ENST00000560829 C9orf170A2RU37 121 aa10.93□□□□□ -0.66
SNX1-211ENST00000560829 ATP6V1G2-DDX39BF2Z307 99 aa10.93□□□□□ -0.66
SNX1-211ENST00000560829 F5H5P2 479 aa10.93□□□□□ -0.66
SNX1-211ENST00000560829 G3V3Q6 166 aa10.93□□□□□ -0.66
SNX1-211ENST00000560829 PPP3CBP16298 524 aa10.93□□□□□ -0.66
SNX1-211ENST00000560829 HLA-GP17693 338 aa10.93□□□□□ -0.66
SNX1-211ENST00000560829 PTAFRP25105 342 aa10.93□□□□□ -0.66
SNX1-211ENST00000560829 CD200P41217 278 aa10.93□□□□□ -0.66
SNX1-211ENST00000560829 RAP2BP61225 183 aa10.93□□□□□ -0.66
SNX1-211ENST00000560829 TMEM128Q5BJH2 165 aa10.93□□□□□ -0.66
SNX1-211ENST00000560829 ALKBH2Q6NS38 261 aa10.93□□□□□ -0.66
SNX1-211ENST00000560829 MITD1Q8WV92 249 aa10.93□□□□□ -0.66
SNX1-211ENST00000560829 RTBDNQ9BSG5 229 aaPredicted RBP10.93□□□□□ -0.66
SNX1-211ENST00000560829 MSL2Q9HCI7 577 aa10.93□□□□□ -0.66
SNX1-211ENST00000560829 Q9N2K0 584 aa10.93□□□□□ -0.66
SNX1-211ENST00000560829 TREM2Q9NZC2 230 aa10.93□□□□□ -0.66
SNX1-211ENST00000560829 PIEZO2Q9H5I5 2752 aa10.93□□□□□ -0.66
SNX1-211ENST00000560829 DEGS1O15121 323 aa10.93□□□□□ -0.66
SNX1-211ENST00000560829 NXPH2O95156 264 aa10.93□□□□□ -0.66
SNX1-211ENST00000560829 DUS4LO95620 317 aaKnown RBP10.93□□□□□ -0.66
SNX1-211ENST00000560829 THBDP07204 575 aa10.93□□□□□ -0.66
SNX1-211ENST00000560829 KLF3P57682 345 aaPredicted RBP10.93□□□□□ -0.66
SNX1-211ENST00000560829 C2orf68Q2NKX9 166 aa10.93□□□□□ -0.66
SNX1-211ENST00000560829 LPCAT3Q6P1A2 487 aa10.93□□□□□ -0.66
SNX1-211ENST00000560829 SLC22A25Q6T423 547 aa10.93□□□□□ -0.66
SNX1-211ENST00000560829 LRP11Q86VZ4 500 aa10.93□□□□□ -0.66
SNX1-211ENST00000560829 TMEM230Q96A57 120 aa10.93□□□□□ -0.66
SNX1-211ENST00000560829 ZNF2Q9BSG1 426 aaPredicted RBP10.93□□□□□ -0.66
SNX1-211ENST00000560829 DPCDQ9BVM2 203 aaPredicted RBP10.93□□□□□ -0.66
SNX1-211ENST00000560829 WDR13Q9H1Z4 485 aa10.93□□□□□ -0.66
SNX1-211ENST00000560829 PIEZO1Q92508 2521 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms