RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 NEK7Q8TDX7 302 aa9.12□□□□□ -0.95
CUX1-217ENST00000558836 LINC00052Q96N35 136 aa9.12□□□□□ -0.95
CUX1-217ENST00000558836 REG4Q9BYZ8 158 aa9.12□□□□□ -0.95
CUX1-217ENST00000558836 NECAP2Q9NVZ3 263 aa9.12□□□□□ -0.95
CUX1-217ENST00000558836 KIF25Q9UIL4 384 aa9.12□□□□□ -0.95
CUX1-217ENST00000558836 ROS1P08922 2347 aa9.11□□□□□ -0.95
CUX1-217ENST00000558836 RHBDL1O75783 438 aa9.11□□□□□ -0.95
CUX1-217ENST00000558836 IFNA2P01563 188 aa9.11□□□□□ -0.95
CUX1-217ENST00000558836 FUT3P21217 361 aa9.11□□□□□ -0.95
CUX1-217ENST00000558836 ARR3P36575 388 aa9.11□□□□□ -0.95
CUX1-217ENST00000558836 IDH3GP51553 393 aaPredicted RBP9.11□□□□□ -0.95
CUX1-217ENST00000558836 IKZF1Q13422 519 aa9.11□□□□□ -0.95
CUX1-217ENST00000558836 ELP2Q6IA86 826 aa9.11□□□□□ -0.95
CUX1-217ENST00000558836 CLEC9AQ6UXN8 241 aa9.11□□□□□ -0.95
CUX1-217ENST00000558836 GALNT11Q8NCW6 608 aa9.11□□□□□ -0.95
CUX1-217ENST00000558836 SLC30A7Q8NEW0 376 aa9.11□□□□□ -0.95
CUX1-217ENST00000558836 ASB13Q8WXK3 278 aa9.11□□□□□ -0.95
CUX1-217ENST00000558836 ZDHHC11Q9H8X9 412 aa9.11□□□□□ -0.95
CUX1-217ENST00000558836 OR2S2Q9NQN1 319 aa9.11□□□□□ -0.95
CUX1-217ENST00000558836 BET1O15155 118 aa9.11□□□□□ -0.95
CUX1-217ENST00000558836 BCL2L11O43521 198 aa9.11□□□□□ -0.95
CUX1-217ENST00000558836 OR2F2O95006 317 aa9.11□□□□□ -0.95
CUX1-217ENST00000558836 SCGB1D2O95969 90 aa9.11□□□□□ -0.95
CUX1-217ENST00000558836 OR2F1Q13607 317 aa9.11□□□□□ -0.95
CUX1-217ENST00000558836 RBM39Q14498 530 aaKnown RBP9.11□□□□□ -0.95
CUX1-217ENST00000558836 CEACAM21Q3KPI0 293 aa9.11□□□□□ -0.95
CUX1-217ENST00000558836 ALKBH6Q3KRA9 238 aa9.11□□□□□ -0.95
CUX1-217ENST00000558836 LURAP1LQ8IV03 231 aa9.11□□□□□ -0.95
CUX1-217ENST00000558836 LRRC20Q8TCA0 184 aa9.11□□□□□ -0.95
CUX1-217ENST00000558836 BCL2L2Q92843 193 aaPredicted RBP9.11□□□□□ -0.95
CUX1-217ENST00000558836 EXTL1Q92935 676 aa9.11□□□□□ -0.95
CUX1-217ENST00000558836 MRPL24Q96A35 216 aaKnown RBP9.11□□□□□ -0.95
CUX1-217ENST00000558836 KCNMB2Q9Y691 235 aa9.11□□□□□ -0.95
CUX1-217ENST00000558836 TRAV39A0A0B4J263 110 aa9.1□□□□□ -0.95
CUX1-217ENST00000558836 KALRNO60229 2985 aa9.1□□□□□ -0.95
CUX1-217ENST00000558836 OR5AC1P0C628 307 aa9.1□□□□□ -0.95
CUX1-217ENST00000558836 ZNF728P0DKX0 622 aa9.1□□□□□ -0.95
CUX1-217ENST00000558836 CALCRP30988 508 aa9.1□□□□□ -0.95
CUX1-217ENST00000558836 IAH1Q2TAA2 248 aaPredicted RBP9.1□□□□□ -0.95
CUX1-217ENST00000558836 NSUN5P2Q63ZY6 315 aa9.1□□□□□ -0.95
CUX1-217ENST00000558836 SGPP2Q8IWX5 399 aa9.1□□□□□ -0.95
CUX1-217ENST00000558836 PDZD9Q8IXQ8 264 aa9.1□□□□□ -0.95
CUX1-217ENST00000558836 RDH5Q92781 318 aa9.1□□□□□ -0.95
CUX1-217ENST00000558836 HIST1H2AAQ96QV6 131 aa9.1□□□□□ -0.95
CUX1-217ENST00000558836 NMES1Q9C002 83 aa9.1□□□□□ -0.95
CUX1-217ENST00000558836 RNF122Q9H9V4 155 aa9.1□□□□□ -0.95
CUX1-217ENST00000558836 RAB18Q9NP72 206 aa9.1□□□□□ -0.95
CUX1-217ENST00000558836 C12orf4Q9NQ89 552 aa9.1□□□□□ -0.95
CUX1-217ENST00000558836 RYDENQ9NUL5 291 aaKnown RBP9.1□□□□□ -0.95
CUX1-217ENST00000558836 SPEF1Q9Y4P9 236 aa9.1□□□□□ -0.95
CUX1-217ENST00000558836 AGFG2O95081 481 aa9.1□□□□□ -0.95
CUX1-217ENST00000558836 SCTP09683 121 aa9.1□□□□□ -0.95
CUX1-217ENST00000558836 PRKACAP17612 351 aa9.1□□□□□ -0.95
CUX1-217ENST00000558836 STK11Q15831 433 aa9.1□□□□□ -0.95
CUX1-217ENST00000558836 ABCA11PQ4W5N1 156 aa9.1□□□□□ -0.95
CUX1-217ENST00000558836 RTN4IP1Q8WWV3 396 aaPredicted RBP9.1□□□□□ -0.95
CUX1-217ENST00000558836 OR2J1Q9GZK6 312 aa9.1□□□□□ -0.95
CUX1-217ENST00000558836 LUZP4Q9P127 313 aa9.1□□□□□ -0.95
CUX1-217ENST00000558836 MFSD2BA6NFX1 497 aa9.09□□□□□ -0.95
CUX1-217ENST00000558836 AADACP22760 399 aa9.09□□□□□ -0.95
CUX1-217ENST00000558836 IGHV1-2P23083 117 aa9.09□□□□□ -0.95
CUX1-217ENST00000558836 ARHGDIBP52566 201 aa9.09□□□□□ -0.95
CUX1-217ENST00000558836 PPA1Q15181 289 aa9.09□□□□□ -0.95
CUX1-217ENST00000558836 TUSC1Q2TAM9 212 aa9.09□□□□□ -0.95
CUX1-217ENST00000558836 RTL6Q6ICC9 239 aa9.09□□□□□ -0.95
CUX1-217ENST00000558836 STPG2Q8N412 459 aa9.09□□□□□ -0.95
CUX1-217ENST00000558836 UBALD1Q8TB05 177 aa9.09□□□□□ -0.95
CUX1-217ENST00000558836 ZNF286AQ9HBT8 521 aa9.09□□□□□ -0.95
CUX1-217ENST00000558836 EDARQ9UNE0 448 aa9.09□□□□□ -0.95
CUX1-217ENST00000558836 TRAPPC2LH3BP13 241 aa9.09□□□□□ -0.95
CUX1-217ENST00000558836 CA11O75493 328 aa9.09□□□□□ -0.95
CUX1-217ENST00000558836 DTYMKP23919 212 aa9.09□□□□□ -0.95
CUX1-217ENST00000558836 FOXF2Q12947 444 aa9.09□□□□□ -0.95
CUX1-217ENST00000558836 ZNF345Q14585 488 aa9.09□□□□□ -0.95
CUX1-217ENST00000558836 VWA1Q6PCB0 445 aa9.09□□□□□ -0.95
CUX1-217ENST00000558836 DHRS11Q6UWP2 260 aa9.09□□□□□ -0.95
CUX1-217ENST00000558836 C20orf204Q6ZNR8 217 aa9.09□□□□□ -0.95
CUX1-217ENST00000558836 LYZL2Q7Z4W2 148 aa9.09□□□□□ -0.95
CUX1-217ENST00000558836 GLRX5Q86SX6 157 aa9.09□□□□□ -0.95
CUX1-217ENST00000558836 MRPS24Q96EL2 167 aaKnown RBP9.09□□□□□ -0.95
CUX1-217ENST00000558836 C2orf50Q96LR7 162 aa9.09□□□□□ -0.95
CUX1-217ENST00000558836 MS4A7Q9GZW8 240 aaPredicted RBP9.09□□□□□ -0.95
CUX1-217ENST00000558836 SLC2A9Q9NRM0 540 aa9.09□□□□□ -0.95
CUX1-217ENST00000558836 IL36GQ9NZH8 169 aa9.09□□□□□ -0.95
CUX1-217ENST00000558836 PFDN2Q9UHV9 154 aa9.09□□□□□ -0.95
CUX1-217ENST00000558836 LSM5Q9Y4Y9 91 aaKnown RBP9.09□□□□□ -0.95
CUX1-217ENST00000558836 CRYM-AS1A6NIL9 109 aa9.09□□□□□ -0.95
CUX1-217ENST00000558836 ANKRD30BLA7E2S9 258 aa9.09□□□□□ -0.95
CUX1-217ENST00000558836 CDK2AP1O14519 115 aa9.09□□□□□ -0.95
CUX1-217ENST00000558836 RRP8O43159 456 aaKnown RBP9.09□□□□□ -0.95
CUX1-217ENST00000558836 DIRAS3O95661 229 aa9.09□□□□□ -0.95
CUX1-217ENST00000558836 CTSDP07339 412 aaPredicted RBP9.09□□□□□ -0.95
CUX1-217ENST00000558836 AKR1C2P52895 323 aa9.09□□□□□ -0.95
CUX1-217ENST00000558836 UBA52P62987 128 aaKnown RBP9.09□□□□□ -0.95
CUX1-217ENST00000558836 AKR1C1Q04828 323 aa9.09□□□□□ -0.95
CUX1-217ENST00000558836 GGNBP1Q5YKI7 109 aa9.09□□□□□ -0.95
CUX1-217ENST00000558836 OR2A2Q6IF42 318 aa9.09□□□□□ -0.95
CUX1-217ENST00000558836 POC1AQ8NBT0 407 aa9.09□□□□□ -0.95
CUX1-217ENST00000558836 C1orf123Q9NWV4 160 aa9.09□□□□□ -0.95
CUX1-217ENST00000558836 FZR1Q9UM11 496 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms