RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 MOB3AQ96BX8 217 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 DMRTA2Q96SC8 542 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 HDHD3Q9BSH5 251 aaPredicted RBP6.28□□□□□ -1.4
VPS13C-206ENST00000558338 PAPOLGQ9BWT3 736 aaKnown RBP6.28□□□□□ -1.4
VPS13C-206ENST00000558338 TTTY12Q9BZ98 90 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 PLK3Q9H4B4 646 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 ZNF442Q9H7R0 627 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 CYTL1Q9NRR1 136 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 OR5AC2Q9NZP5 309 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 FOXJ2Q9P0K8 574 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 GSKIPQ9P0R6 139 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 TRIOBPQ9H2D6 2365 aa6.28□□□□□ -1.4
VPS13C-206ENST00000558338 PCSK5Q92824 1860 aa6.27□□□□□ -1.41
VPS13C-206ENST00000558338 IGKV1D-8A0A087WSZ0 117 aa6.27□□□□□ -1.41
VPS13C-206ENST00000558338 A0A096LPE4 126 aa6.27□□□□□ -1.41
VPS13C-206ENST00000558338 IGKV1-12A0A0C4DH73 117 aa6.27□□□□□ -1.41
VPS13C-206ENST00000558338 A0A1W2PPZ6 126 aa6.27□□□□□ -1.41
VPS13C-206ENST00000558338 PQLC2LA1A4F0 135 aa6.27□□□□□ -1.41
VPS13C-206ENST00000558338 E5RGE8 158 aa6.27□□□□□ -1.41
VPS13C-206ENST00000558338 KLRC4-KLRK1H3BQV0 150 aa6.27□□□□□ -1.41
VPS13C-206ENST00000558338 K7EPK0 472 aa6.27□□□□□ -1.41
VPS13C-206ENST00000558338 LGALS8O00214 317 aa6.27□□□□□ -1.41
VPS13C-206ENST00000558338 NME2P1O60361 137 aa6.27□□□□□ -1.41
VPS13C-206ENST00000558338 JTBO76095 146 aa6.27□□□□□ -1.41
VPS13C-206ENST00000558338 DIRAS3O95661 229 aa6.27□□□□□ -1.41
VPS13C-206ENST00000558338 MT-CO3P00414 261 aa6.27□□□□□ -1.41
VPS13C-206ENST00000558338 IGKV1D-12P01611 117 aa6.27□□□□□ -1.41
VPS13C-206ENST00000558338 APOC3P02656 99 aa6.27□□□□□ -1.41
VPS13C-206ENST00000558338 CD79AP11912 226 aa6.27□□□□□ -1.41
VPS13C-206ENST00000558338 NME2P22392 152 aa6.27□□□□□ -1.41
VPS13C-206ENST00000558338 FGF12P61328 243 aa6.27□□□□□ -1.41
VPS13C-206ENST00000558338 PIGYQ3MUY2 71 aa6.27□□□□□ -1.41
VPS13C-206ENST00000558338 GGNBP1Q5YKI7 109 aa6.27□□□□□ -1.41
VPS13C-206ENST00000558338 IQCF2Q8IXL9 164 aa6.27□□□□□ -1.41
VPS13C-206ENST00000558338 MKXQ8IYA7 352 aa6.27□□□□□ -1.41
VPS13C-206ENST00000558338 LGI3Q8N145 548 aa6.27□□□□□ -1.41
VPS13C-206ENST00000558338 FAM71E2Q8N5Q1 922 aa6.27□□□□□ -1.41
VPS13C-206ENST00000558338 BPIFCQ8NFQ6 507 aa6.27□□□□□ -1.41
VPS13C-206ENST00000558338 OR56B2PQ8NGI1 322 aa6.27□□□□□ -1.41
VPS13C-206ENST00000558338 OR1S2Q8NGQ3 325 aa6.27□□□□□ -1.41
VPS13C-206ENST00000558338 RTN4IP1Q8WWV3 396 aaPredicted RBP6.27□□□□□ -1.41
VPS13C-206ENST00000558338 TOMM40LQ969M1 308 aa6.27□□□□□ -1.41
VPS13C-206ENST00000558338 RRNAD1Q96FB5 475 aaKnown RBP6.27□□□□□ -1.41
VPS13C-206ENST00000558338 SIGLEC12Q96PQ1 595 aa6.27□□□□□ -1.41
VPS13C-206ENST00000558338 HIST1H2AAQ96QV6 131 aa6.27□□□□□ -1.41
VPS13C-206ENST00000558338 PRRX2Q99811 253 aa6.27□□□□□ -1.41
VPS13C-206ENST00000558338 SPACA1Q9HBV2 294 aa6.27□□□□□ -1.41
VPS13C-206ENST00000558338 GP6Q9HCN6 339 aa6.27□□□□□ -1.41
VPS13C-206ENST00000558338 ACKR4Q9NPB9 350 aa6.27□□□□□ -1.41
VPS13C-206ENST00000558338 SLC7A10Q9NS82 523 aa6.27□□□□□ -1.41
VPS13C-206ENST00000558338 LPAR3Q9UBY5 353 aa6.27□□□□□ -1.41
VPS13C-206ENST00000558338 NSG2Q9Y328 171 aa6.27□□□□□ -1.41
VPS13C-206ENST00000558338 LAMA1P25391 3075 aa6.27□□□□□ -1.41
VPS13C-206ENST00000558338 KIR2DS1A0A191URI9 304 aa6.26□□□□□ -1.41
VPS13C-206ENST00000558338 PMS2P1A4D2B8 440 aa6.26□□□□□ -1.41
VPS13C-206ENST00000558338 MSGN1A6NI15 193 aa6.26□□□□□ -1.41
VPS13C-206ENST00000558338 MPTX1A8MV57 137 aa6.26□□□□□ -1.41
VPS13C-206ENST00000558338 J3QW42 95 aa6.26□□□□□ -1.41
VPS13C-206ENST00000558338 OR7C1O76099 320 aaPredicted RBP6.26□□□□□ -1.41
VPS13C-206ENST00000558338 CTXN2P0C2S0 81 aa6.26□□□□□ -1.41
VPS13C-206ENST00000558338 HKR1P10072 659 aa6.26□□□□□ -1.41
VPS13C-206ENST00000558338 CD59P13987 128 aa6.26□□□□□ -1.41
VPS13C-206ENST00000558338 DUSP1P28562 367 aa6.26□□□□□ -1.41
VPS13C-206ENST00000558338 RPL12P30050 165 aaKnown RBP6.26□□□□□ -1.41
VPS13C-206ENST00000558338 FCGR2CP31995 323 aa6.26□□□□□ -1.41
VPS13C-206ENST00000558338 OPRM1P35372 400 aa6.26□□□□□ -1.41
VPS13C-206ENST00000558338 KIR2DS4P43632 304 aa6.26□□□□□ -1.41
VPS13C-206ENST00000558338 BLOC1S1P78537 153 aa6.26□□□□□ -1.41
VPS13C-206ENST00000558338 SRYQ05066 204 aa6.26□□□□□ -1.41
VPS13C-206ENST00000558338 PRDX4Q13162 271 aa6.26□□□□□ -1.41
VPS13C-206ENST00000558338 BTN1A1Q13410 526 aa6.26□□□□□ -1.41
VPS13C-206ENST00000558338 TMEM187Q14656 261 aa6.26□□□□□ -1.41
VPS13C-206ENST00000558338 KIR2DS1Q14954 304 aa6.26□□□□□ -1.41
VPS13C-206ENST00000558338 CEACAM21Q3KPI0 293 aa6.26□□□□□ -1.41
VPS13C-206ENST00000558338 KRTCAP3Q53RY4 240 aa6.26□□□□□ -1.41
VPS13C-206ENST00000558338 SLC25A26Q70HW3 274 aa6.26□□□□□ -1.41
VPS13C-206ENST00000558338 GLRX5Q86SX6 157 aa6.26□□□□□ -1.41
VPS13C-206ENST00000558338 TUSC5Q8IXB3 177 aa6.26□□□□□ -1.41
VPS13C-206ENST00000558338 SVBPQ8N300 66 aa6.26□□□□□ -1.41
VPS13C-206ENST00000558338 TMEM251Q8N6I4 163 aa6.26□□□□□ -1.41
VPS13C-206ENST00000558338 CPEB3Q8NE35 698 aaKnown RBP6.26□□□□□ -1.41
VPS13C-206ENST00000558338 OR5T2Q8NGG2 359 aa6.26□□□□□ -1.41
VPS13C-206ENST00000558338 OR5L1Q8NGL2 311 aa6.26□□□□□ -1.41
VPS13C-206ENST00000558338 TMED6Q8WW62 240 aa6.26□□□□□ -1.41
VPS13C-206ENST00000558338 LRRC46Q96FV0 321 aa6.26□□□□□ -1.41
VPS13C-206ENST00000558338 NARS2Q96I59 477 aaKnown RBP6.26□□□□□ -1.41
VPS13C-206ENST00000558338 MS4A5Q9H3V2 200 aa6.26□□□□□ -1.41
VPS13C-206ENST00000558338 RIMS4Q9H426 269 aaPredicted RBP6.26□□□□□ -1.41
VPS13C-206ENST00000558338 CALHM2Q9HA72 323 aa6.26□□□□□ -1.41
VPS13C-206ENST00000558338 RHOFQ9HBH0 211 aa6.26□□□□□ -1.41
VPS13C-206ENST00000558338 TAF9BQ9HBM6 251 aa6.26□□□□□ -1.41
VPS13C-206ENST00000558338 SLC2A9Q9NRM0 540 aa6.26□□□□□ -1.41
VPS13C-206ENST00000558338 PRR13Q9NZ81 148 aa6.26□□□□□ -1.41
VPS13C-206ENST00000558338 TMED3Q9Y3Q3 217 aa6.26□□□□□ -1.41
VPS13C-206ENST00000558338 POMT1Q9Y6A1 747 aa6.26□□□□□ -1.41
VPS13C-206ENST00000558338 TNRC6AQ8NDV7 1962 aaKnown RBP6.26□□□□□ -1.41
VPS13C-206ENST00000558338 SDK2Q58EX2 2172 aa6.26□□□□□ -1.41
VPS13C-206ENST00000558338 MED12Q93074 2177 aa6.26□□□□□ -1.41
VPS13C-206ENST00000558338 BORCS7-ASMTA0A0B4J1R7 106 aa6.26□□□□□ -1.41
VPS13C-206ENST00000558338 DUXBA0A1W2PPF3 345 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms