RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 CEACAM1P13688 526 aa14.11□□□□□ -0.15
SHMT2-231ENST00000557433 KLK2P20151 261 aa14.11□□□□□ -0.15
SHMT2-231ENST00000557433 DSCR4P56555 118 aaPredicted RBP14.11□□□□□ -0.15
SHMT2-231ENST00000557433 KIAA0141Q14154 515 aaPredicted RBP14.11□□□□□ -0.15
SHMT2-231ENST00000557433 TGIF1Q15583 401 aa14.11□□□□□ -0.15
SHMT2-231ENST00000557433 DNLZQ5SXM8 178 aa14.11□□□□□ -0.15
SHMT2-231ENST00000557433 ZNF385CQ66K41 422 aaPredicted RBP14.11□□□□□ -0.15
SHMT2-231ENST00000557433 WDR5BQ86VZ2 330 aa14.11□□□□□ -0.15
SHMT2-231ENST00000557433 DTX1Q86Y01 620 aa14.11□□□□□ -0.15
SHMT2-231ENST00000557433 CLEC18CQ8NCF0 446 aa14.11□□□□□ -0.15
SHMT2-231ENST00000557433 OR10G4Q8NGN3 311 aa14.11□□□□□ -0.15
SHMT2-231ENST00000557433 OR13D1Q8NGV5 346 aa14.11□□□□□ -0.15
SHMT2-231ENST00000557433 OR1F12Q8NHA8 337 aa14.11□□□□□ -0.15
SHMT2-231ENST00000557433 FBXO17Q96EF6 278 aa14.11□□□□□ -0.15
SHMT2-231ENST00000557433 ZNF385AQ96PM9 386 aaKnown RBP14.11□□□□□ -0.15
SHMT2-231ENST00000557433 OPA3Q9H6K4 179 aa14.11□□□□□ -0.15
SHMT2-231ENST00000557433 RYDENQ9NUL5 291 aaKnown RBP14.11□□□□□ -0.15
SHMT2-231ENST00000557433 PUS1Q9Y606 427 aaKnown RBP eCLIP14.11□□□□□ -0.15
SHMT2-231ENST00000557433 IGKV1-27A0A075B6S5 117 aa14.1□□□□□ -0.15
SHMT2-231ENST00000557433 TGOLN2O43493 480 aa14.1□□□□□ -0.15
SHMT2-231ENST00000557433 SPRY1O43609 319 aaPredicted RBP14.1□□□□□ -0.15
SHMT2-231ENST00000557433 PPYP01298 95 aa14.1□□□□□ -0.15
SHMT2-231ENST00000557433 DBHP09172 617 aa14.1□□□□□ -0.15
SHMT2-231ENST00000557433 FUT3P21217 361 aa14.1□□□□□ -0.15
SHMT2-231ENST00000557433 ATP6V0CP27449 155 aa14.1□□□□□ -0.15
SHMT2-231ENST00000557433 ZNF506Q5JVG8 444 aa14.1□□□□□ -0.15
SHMT2-231ENST00000557433 SP5Q6BEB4 398 aaPredicted RBP14.1□□□□□ -0.15
SHMT2-231ENST00000557433 ZC3HAV1Q7Z2W4 902 aaKnown RBP14.1□□□□□ -0.15
SHMT2-231ENST00000557433 SLC25A45Q8N413 288 aa14.1□□□□□ -0.15
SHMT2-231ENST00000557433 OR6C1Q96RD1 312 aa14.1□□□□□ -0.15
SHMT2-231ENST00000557433 B4DEV8 164 aa14.09□□□□□ -0.15
SHMT2-231ENST00000557433 H3BQ15 152 aa14.09□□□□□ -0.15
SHMT2-231ENST00000557433 GEMIN2O14893 280 aaKnown RBP14.09□□□□□ -0.15
SHMT2-231ENST00000557433 F10P00742 488 aa14.09□□□□□ -0.15
SHMT2-231ENST00000557433 SRP19P09132 144 aaKnown RBP14.09□□□□□ -0.15
SHMT2-231ENST00000557433 AADACP22760 399 aa14.09□□□□□ -0.15
SHMT2-231ENST00000557433 CD81P60033 236 aa14.09□□□□□ -0.15
SHMT2-231ENST00000557433 VAMP2P63027 116 aa14.09□□□□□ -0.15
SHMT2-231ENST00000557433 OR8G1Q15617 311 aa14.09□□□□□ -0.15
SHMT2-231ENST00000557433 TSPO2Q5TGU0 170 aa14.09□□□□□ -0.15
SHMT2-231ENST00000557433 SPSB3Q6PJ21 355 aa14.09□□□□□ -0.15
SHMT2-231ENST00000557433 SLC35E3Q7Z769 313 aa14.09□□□□□ -0.15
SHMT2-231ENST00000557433 DPPA2Q7Z7J5 298 aa14.09□□□□□ -0.15
SHMT2-231ENST00000557433 ST3GAL6Q9Y274 331 aa14.09□□□□□ -0.15
SHMT2-231ENST00000557433 ZNF729A6NN14 1252 aaPredicted RBP14.09□□□□□ -0.15
SHMT2-231ENST00000557433 SRFP11831 508 aa14.09□□□□□ -0.15
SHMT2-231ENST00000557433 S100A2P29034 98 aa14.09□□□□□ -0.15
SHMT2-231ENST00000557433 RPS10P46783 165 aaKnown RBP14.09□□□□□ -0.15
SHMT2-231ENST00000557433 RBM11P57052 281 aaKnown RBP14.09□□□□□ -0.15
SHMT2-231ENST00000557433 TLE4Q04727 773 aa14.09□□□□□ -0.15
SHMT2-231ENST00000557433 FOXO1Q12778 655 aa14.09□□□□□ -0.15
SHMT2-231ENST00000557433 ZNF695Q8IW36 515 aa14.09□□□□□ -0.15
SHMT2-231ENST00000557433 MR1Q95460 341 aa14.09□□□□□ -0.15
SHMT2-231ENST00000557433 IL22RA2Q969J5 263 aa14.09□□□□□ -0.15
SHMT2-231ENST00000557433 TP53RKQ96S44 253 aa14.09□□□□□ -0.15
SHMT2-231ENST00000557433 GGACTQ9BVM4 153 aa14.09□□□□□ -0.15
SHMT2-231ENST00000557433 OR6C6A6NF89 314 aa14.08□□□□□ -0.16
SHMT2-231ENST00000557433 LIFP15018 202 aa14.08□□□□□ -0.16
SHMT2-231ENST00000557433 UBE2KP61086 200 aa14.08□□□□□ -0.16
SHMT2-231ENST00000557433 RAC1P63000 192 aa14.08□□□□□ -0.16
SHMT2-231ENST00000557433 ACER2Q5QJU3 275 aa14.08□□□□□ -0.16
SHMT2-231ENST00000557433 TMEM252Q8N6L7 170 aa14.08□□□□□ -0.16
SHMT2-231ENST00000557433 ZIC4Q8N9L1 334 aa14.08□□□□□ -0.16
SHMT2-231ENST00000557433 CPT1CQ8TCG5 803 aa14.08□□□□□ -0.16
SHMT2-231ENST00000557433 TVP23CQ96ET8 276 aa14.08□□□□□ -0.16
SHMT2-231ENST00000557433 PARPBPQ9NWS1 579 aa14.08□□□□□ -0.16
SHMT2-231ENST00000557433 TREM2Q9NZC2 230 aa14.08□□□□□ -0.16
SHMT2-231ENST00000557433 DKKL1Q9UK85 242 aa14.08□□□□□ -0.16
SHMT2-231ENST00000557433 NOSIPQ9Y314 301 aaKnown RBP14.08□□□□□ -0.16
SHMT2-231ENST00000557433 UBE2J1Q9Y385 318 aaPredicted RBP14.08□□□□□ -0.16
SHMT2-231ENST00000557433 LOC102723996A0A087X1L8 192 aa14.07□□□□□ -0.16
SHMT2-231ENST00000557433 TRAV1-1A0A0B4J248 108 aa14.07□□□□□ -0.16
SHMT2-231ENST00000557433 IGSF23A1L1A6 192 aa14.07□□□□□ -0.16
SHMT2-231ENST00000557433 NKX2-6A6NCS4 301 aa14.07□□□□□ -0.16
SHMT2-231ENST00000557433 FAM24AA6NFZ4 105 aa14.07□□□□□ -0.16
SHMT2-231ENST00000557433 HSD17B6O14756 317 aa14.07□□□□□ -0.16
SHMT2-231ENST00000557433 TIAF1O95411 115 aa14.07□□□□□ -0.16
SHMT2-231ENST00000557433 LCATP04180 440 aa14.07□□□□□ -0.16
SHMT2-231ENST00000557433 TAGLN2P37802 199 aaKnown RBP14.07□□□□□ -0.16
SHMT2-231ENST00000557433 PCBD1P61457 104 aa14.07□□□□□ -0.16
SHMT2-231ENST00000557433 KHDC3LQ587J8 217 aa14.07□□□□□ -0.16
SHMT2-231ENST00000557433 MEX3BQ6ZN04 569 aaKnown RBP14.07□□□□□ -0.16
SHMT2-231ENST00000557433 PPP1R3BQ86XI6 285 aa14.07□□□□□ -0.16
SHMT2-231ENST00000557433 ZNF610Q8N9Z0 462 aa14.07□□□□□ -0.16
SHMT2-231ENST00000557433 Q8NFD4 153 aa14.07□□□□□ -0.16
SHMT2-231ENST00000557433 OR11L1Q8NGX0 322 aa14.07□□□□□ -0.16
SHMT2-231ENST00000557433 DNASE2BQ8WZ79 361 aa14.07□□□□□ -0.16
SHMT2-231ENST00000557433 RAB39BQ96DA2 213 aa14.07□□□□□ -0.16
SHMT2-231ENST00000557433 RARRES2Q99969 163 aa14.07□□□□□ -0.16
SHMT2-231ENST00000557433 NIPSNAP3BQ9BS92 247 aa14.07□□□□□ -0.16
SHMT2-231ENST00000557433 WDR54Q9H977 334 aa14.07□□□□□ -0.16
SHMT2-231ENST00000557433 NCOA6Q14686 2063 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-231ENST00000557433 ELOA3CA0A087WX78 387 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-231ENST00000557433 IGKV1-12A0A0C4DH73 117 aa14.07□□□□□ -0.16
SHMT2-231ENST00000557433 SEC14L6B5MCN3 397 aa14.07□□□□□ -0.16
SHMT2-231ENST00000557433 IGKV1D-12P01611 117 aa14.07□□□□□ -0.16
SHMT2-231ENST00000557433 PIGYQ3MUY2 71 aa14.07□□□□□ -0.16
SHMT2-231ENST00000557433 AKR1C8PQ5T2L2 129 aa14.07□□□□□ -0.16
SHMT2-231ENST00000557433 PRAMEF20Q5VT98 475 aa14.07□□□□□ -0.16
SHMT2-231ENST00000557433 RAET1LQ5VY80 246 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms