RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 GRK1Q15835 563 aa9.46□□□□□ -0.9
CCDC88C-212ENST00000556767 ELP2Q6IA86 826 aa9.46□□□□□ -0.9
CCDC88C-212ENST00000556767 ASCL4Q6XD76 172 aa9.46□□□□□ -0.9
CCDC88C-212ENST00000556767 LRRTM1Q86UE6 522 aa9.46□□□□□ -0.9
CCDC88C-212ENST00000556767 CDH26Q8IXH8 852 aa9.46□□□□□ -0.9
CCDC88C-212ENST00000556767 OR5D13Q8NGL4 314 aa9.46□□□□□ -0.9
CCDC88C-212ENST00000556767 DACT3Q96B18 629 aaPredicted RBP9.46□□□□□ -0.9
CCDC88C-212ENST00000556767 FOXRED1Q96CU9 486 aaPredicted RBP9.46□□□□□ -0.9
CCDC88C-212ENST00000556767 SNX22Q96L94 193 aa9.46□□□□□ -0.9
CCDC88C-212ENST00000556767 WDFY2Q96P53 400 aa9.46□□□□□ -0.9
CCDC88C-212ENST00000556767 OCEL1Q9H607 264 aa9.46□□□□□ -0.9
CCDC88C-212ENST00000556767 PCDHB16Q9NRJ7 776 aa9.46□□□□□ -0.9
CCDC88C-212ENST00000556767 C19orf12Q9NSK7 152 aa9.46□□□□□ -0.9
CCDC88C-212ENST00000556767 TRBV23-1A0A0A0MS06 115 aa9.45□□□□□ -0.9
CCDC88C-212ENST00000556767 TRAV40A0A0B4J280 105 aa9.45□□□□□ -0.9
CCDC88C-212ENST00000556767 TRDV1A0A1B0GX56 115 aa9.45□□□□□ -0.9
CCDC88C-212ENST00000556767 HSPB6O14558 160 aa9.45□□□□□ -0.9
CCDC88C-212ENST00000556767 ZNF737O75373 536 aa9.45□□□□□ -0.9
CCDC88C-212ENST00000556767 IFNA2P01563 188 aa9.45□□□□□ -0.9
CCDC88C-212ENST00000556767 GTF2F2P13984 249 aa9.45□□□□□ -0.9
CCDC88C-212ENST00000556767 EPHA1P21709 976 aa9.45□□□□□ -0.9
CCDC88C-212ENST00000556767 MYL9P24844 172 aa9.45□□□□□ -0.9
CCDC88C-212ENST00000556767 SCGB2A2Q13296 93 aa9.45□□□□□ -0.9
CCDC88C-212ENST00000556767 BLMHQ13867 455 aa9.45□□□□□ -0.9
CCDC88C-212ENST00000556767 GPR176Q14439 515 aa9.45□□□□□ -0.9
CCDC88C-212ENST00000556767 PIGYQ3MUY2 71 aa9.45□□□□□ -0.9
CCDC88C-212ENST00000556767 OR8H2Q8N162 312 aa9.45□□□□□ -0.9
CCDC88C-212ENST00000556767 OSR2Q8N2R0 312 aa9.45□□□□□ -0.9
CCDC88C-212ENST00000556767 LY6G5BQ8NDX9 201 aa9.45□□□□□ -0.9
CCDC88C-212ENST00000556767 OR4S1Q8NGB4 309 aa9.45□□□□□ -0.9
CCDC88C-212ENST00000556767 OR4D6Q8NGJ1 314 aa9.45□□□□□ -0.9
CCDC88C-212ENST00000556767 POM121Q96HA1 1249 aa9.45□□□□□ -0.9
CCDC88C-212ENST00000556767 UQCC2Q9BRT2 126 aa9.45□□□□□ -0.9
CCDC88C-212ENST00000556767 PPA2Q9H2U2 334 aa9.45□□□□□ -0.9
CCDC88C-212ENST00000556767 PLGRKTQ9HBL7 147 aa9.45□□□□□ -0.9
CCDC88C-212ENST00000556767 ING3Q9NXR8 418 aa9.45□□□□□ -0.9
CCDC88C-212ENST00000556767 ST3GAL6Q9Y274 331 aa9.45□□□□□ -0.9
CCDC88C-212ENST00000556767 AK6Q9Y3D8 172 aaKnown RBP9.45□□□□□ -0.9
CCDC88C-212ENST00000556767 A0A1W2PP11 408 aa9.44□□□□□ -0.9
CCDC88C-212ENST00000556767 A0A1W2PPH5 198 aa9.44□□□□□ -0.9
CCDC88C-212ENST00000556767 MEX3AA1L020 520 aaKnown RBP9.44□□□□□ -0.9
CCDC88C-212ENST00000556767 PSPNO60542 156 aa9.44□□□□□ -0.9
CCDC88C-212ENST00000556767 CRTAPO75718 401 aaPredicted RBP9.44□□□□□ -0.9
CCDC88C-212ENST00000556767 OR7C1O76099 320 aaPredicted RBP9.44□□□□□ -0.9
CCDC88C-212ENST00000556767 IL13RA2Q14627 380 aa9.44□□□□□ -0.9
CCDC88C-212ENST00000556767 PAN3Q58A45 887 aaKnown RBP9.44□□□□□ -0.9
CCDC88C-212ENST00000556767 GPR157Q5UAW9 335 aa9.44□□□□□ -0.9
CCDC88C-212ENST00000556767 TMEM200BQ69YZ2 307 aa9.44□□□□□ -0.9
CCDC88C-212ENST00000556767 C22orf42Q6IC83 251 aa9.44□□□□□ -0.9
CCDC88C-212ENST00000556767 Q6P435 159 aa9.44□□□□□ -0.9
CCDC88C-212ENST00000556767 C17orf107Q6ZR85 190 aa9.44□□□□□ -0.9
CCDC88C-212ENST00000556767 VMO1Q7Z5L0 202 aa9.44□□□□□ -0.9
CCDC88C-212ENST00000556767 PDZD9Q8IXQ8 264 aa9.44□□□□□ -0.9
CCDC88C-212ENST00000556767 BPIFB2Q8N4F0 458 aa9.44□□□□□ -0.9
CCDC88C-212ENST00000556767 TPRX1Q8N7U7 411 aa9.44□□□□□ -0.9
CCDC88C-212ENST00000556767 CHST4Q8NCG5 386 aa9.44□□□□□ -0.9
CCDC88C-212ENST00000556767 C8orf46Q8TAG6 207 aa9.44□□□□□ -0.9
CCDC88C-212ENST00000556767 TBC1D15Q8TC07 691 aa9.44□□□□□ -0.9
CCDC88C-212ENST00000556767 C22orf15Q8WYQ4 148 aa9.44□□□□□ -0.9
CCDC88C-212ENST00000556767 UPRTQ96BW1 309 aa9.44□□□□□ -0.9
CCDC88C-212ENST00000556767 TBX15Q96SF7 602 aa9.44□□□□□ -0.9
CCDC88C-212ENST00000556767 MS4A7Q9GZW8 240 aaPredicted RBP9.44□□□□□ -0.9
CCDC88C-212ENST00000556767 SIRPDQ9H106 197 aa9.44□□□□□ -0.9
CCDC88C-212ENST00000556767 BANF2Q9H503 90 aa9.44□□□□□ -0.9
CCDC88C-212ENST00000556767 SEBOXQ9HB31 216 aaPredicted RBP9.44□□□□□ -0.9
CCDC88C-212ENST00000556767 SIRT7Q9NRC8 400 aa9.44□□□□□ -0.9
CCDC88C-212ENST00000556767 IL36GQ9NZH8 169 aa9.44□□□□□ -0.9
CCDC88C-212ENST00000556767 NUP50Q9UKX7 468 aa9.44□□□□□ -0.9
CCDC88C-212ENST00000556767 STUB1Q9UNE7 303 aa9.44□□□□□ -0.9
CCDC88C-212ENST00000556767 SSR3Q9UNL2 185 aa9.44□□□□□ -0.9
CCDC88C-212ENST00000556767 KPTNQ9Y664 436 aa9.44□□□□□ -0.9
CCDC88C-212ENST00000556767 ZANQ9Y493 2812 aa9.43□□□□□ -0.9
CCDC88C-212ENST00000556767 A0A0G2JK05 382 aa9.43□□□□□ -0.9
CCDC88C-212ENST00000556767 SLC33A1O00400 549 aaPredicted RBP9.43□□□□□ -0.9
CCDC88C-212ENST00000556767 PDCD5O14737 125 aa9.43□□□□□ -0.9
CCDC88C-212ENST00000556767 MGST3O14880 152 aa9.43□□□□□ -0.9
CCDC88C-212ENST00000556767 IGHV4-38-2P0DP08 117 aa9.43□□□□□ -0.9
CCDC88C-212ENST00000556767 CCL3L1P16619 93 aa9.43□□□□□ -0.9
CCDC88C-212ENST00000556767 CD36P16671 472 aa9.43□□□□□ -0.9
CCDC88C-212ENST00000556767 FPR2P25090 351 aa9.43□□□□□ -0.9
CCDC88C-212ENST00000556767 HTR2CP28335 458 aa9.43□□□□□ -0.9
CCDC88C-212ENST00000556767 OR3A1P47881 315 aa9.43□□□□□ -0.9
CCDC88C-212ENST00000556767 RBM11P57052 281 aaKnown RBP9.43□□□□□ -0.9
CCDC88C-212ENST00000556767 PRB3Q04118 309 aaPredicted RBP9.43□□□□□ -0.9
CCDC88C-212ENST00000556767 ATXN7L3Q14CW9 347 aaPredicted RBP9.43□□□□□ -0.9
CCDC88C-212ENST00000556767 TAF9Q16594 264 aa9.43□□□□□ -0.9
CCDC88C-212ENST00000556767 KLF17Q5JT82 389 aaPredicted RBP9.43□□□□□ -0.9
CCDC88C-212ENST00000556767 ATAD3CQ5T2N8 411 aa9.43□□□□□ -0.9
CCDC88C-212ENST00000556767 SYT6Q5T7P8 510 aaPredicted RBP9.43□□□□□ -0.9
CCDC88C-212ENST00000556767 METAP1DQ6UB28 335 aaPredicted RBP9.43□□□□□ -0.9
CCDC88C-212ENST00000556767 TRAPPC6BQ86SZ2 158 aa9.43□□□□□ -0.9
CCDC88C-212ENST00000556767 OR51T1Q8NGJ9 327 aa9.43□□□□□ -0.9
CCDC88C-212ENST00000556767 NEK7Q8TDX7 302 aa9.43□□□□□ -0.9
CCDC88C-212ENST00000556767 LHX4Q969G2 390 aa9.43□□□□□ -0.9
CCDC88C-212ENST00000556767 FAM46BQ96A09 425 aa9.43□□□□□ -0.9
CCDC88C-212ENST00000556767 DMRTB1Q96MA1 342 aa9.43□□□□□ -0.9
CCDC88C-212ENST00000556767 CHCHD6Q9BRQ6 235 aa9.43□□□□□ -0.9
CCDC88C-212ENST00000556767 SELENOIQ9C0D9 397 aa9.43□□□□□ -0.9
CCDC88C-212ENST00000556767 CST11Q9H112 138 aa9.43□□□□□ -0.9
CCDC88C-212ENST00000556767 ZNF696Q9H7X3 374 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 106.6 ms