RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 WNT4P56705 351 aa9.45□□□□□ -0.9
CCDC88C-208ENST00000554165 BPIFB3P59826 476 aa9.45□□□□□ -0.9
CCDC88C-208ENST00000554165 MED21Q13503 144 aa9.45□□□□□ -0.9
CCDC88C-208ENST00000554165 GRK1Q15835 563 aa9.45□□□□□ -0.9
CCDC88C-208ENST00000554165 Q6P435 159 aa9.45□□□□□ -0.9
CCDC88C-208ENST00000554165 C12orf54Q6X4T0 127 aa9.45□□□□□ -0.9
CCDC88C-208ENST00000554165 GDPD3Q7L5L3 318 aa9.45□□□□□ -0.9
CCDC88C-208ENST00000554165 Q8IYB0 196 aa9.45□□□□□ -0.9
CCDC88C-208ENST00000554165 SAXO1Q8IYX7 474 aa9.45□□□□□ -0.9
CCDC88C-208ENST00000554165 HAVCR2Q8TDQ0 301 aa9.45□□□□□ -0.9
CCDC88C-208ENST00000554165 TNFAIP8L1Q8WVP5 186 aa9.45□□□□□ -0.9
CCDC88C-208ENST00000554165 SLC25A28Q96A46 364 aa9.45□□□□□ -0.9
CCDC88C-208ENST00000554165 FAM234AQ9H0X4 552 aa9.45□□□□□ -0.9
CCDC88C-208ENST00000554165 PPA2Q9H2U2 334 aa9.45□□□□□ -0.9
CCDC88C-208ENST00000554165 LSM2Q9Y333 95 aaKnown RBP9.45□□□□□ -0.9
CCDC88C-208ENST00000554165 FBN3Q75N90 2809 aa9.44□□□□□ -0.9
CCDC88C-208ENST00000554165 A0A0G2JK05 382 aa9.44□□□□□ -0.9
CCDC88C-208ENST00000554165 MEIOCA2RUB1 952 aa9.44□□□□□ -0.9
CCDC88C-208ENST00000554165 FAM181BA6NEQ2 426 aa9.44□□□□□ -0.9
CCDC88C-208ENST00000554165 CLDN34H7C241 214 aa9.44□□□□□ -0.9
CCDC88C-208ENST00000554165 SH2D1BO14796 132 aa9.44□□□□□ -0.9
CCDC88C-208ENST00000554165 MYL12BO14950 172 aa9.44□□□□□ -0.9
CCDC88C-208ENST00000554165 MMP23AO75900 390 aa9.44□□□□□ -0.9
CCDC88C-208ENST00000554165 ATP6V1G2O95670 118 aa9.44□□□□□ -0.9
CCDC88C-208ENST00000554165 CD2P06729 351 aa9.44□□□□□ -0.9
CCDC88C-208ENST00000554165 HKR1P10072 659 aa9.44□□□□□ -0.9
CCDC88C-208ENST00000554165 IGFBP3P17936 291 aaPredicted RBP9.44□□□□□ -0.9
CCDC88C-208ENST00000554165 MYF6P23409 242 aa9.44□□□□□ -0.9
CCDC88C-208ENST00000554165 IER3P46695 156 aa9.44□□□□□ -0.9
CCDC88C-208ENST00000554165 UBE2E1P51965 193 aa9.44□□□□□ -0.9
CCDC88C-208ENST00000554165 AESQ08117 197 aa9.44□□□□□ -0.9
CCDC88C-208ENST00000554165 BLMHQ13867 455 aa9.44□□□□□ -0.9
CCDC88C-208ENST00000554165 PIGYQ3MUY2 71 aa9.44□□□□□ -0.9
CCDC88C-208ENST00000554165 AWAT1Q58HT5 328 aa9.44□□□□□ -0.9
CCDC88C-208ENST00000554165 DDI2Q5TDH0 399 aa9.44□□□□□ -0.9
CCDC88C-208ENST00000554165 C16orf87Q6PH81 154 aa9.44□□□□□ -0.9
CCDC88C-208ENST00000554165 FIP1L1Q6UN15 594 aaKnown RBP9.44□□□□□ -0.9
CCDC88C-208ENST00000554165 BAIAP2L2Q6UXY1 529 aa9.44□□□□□ -0.9
CCDC88C-208ENST00000554165 ZSCAN4Q8NAM6 433 aaPredicted RBP9.44□□□□□ -0.9
CCDC88C-208ENST00000554165 CYYR1Q96J86 154 aa9.44□□□□□ -0.9
CCDC88C-208ENST00000554165 GPER1Q99527 375 aa9.44□□□□□ -0.9
CCDC88C-208ENST00000554165 CDCA4Q9BXL8 241 aa9.44□□□□□ -0.9
CCDC88C-208ENST00000554165 ANKRD60Q9BZ19 345 aa9.44□□□□□ -0.9
CCDC88C-208ENST00000554165 FAM192AQ9GZU8 254 aa9.44□□□□□ -0.9
CCDC88C-208ENST00000554165 SEBOXQ9HB31 216 aaPredicted RBP9.44□□□□□ -0.9
CCDC88C-208ENST00000554165 EXOSC4Q9NPD3 245 aaKnown RBP9.44□□□□□ -0.9
CCDC88C-208ENST00000554165 NOX4Q9NPH5 578 aa9.44□□□□□ -0.9
CCDC88C-208ENST00000554165 TMEM138Q9NPI0 162 aa9.44□□□□□ -0.9
CCDC88C-208ENST00000554165 ERGIC3Q9Y282 383 aa9.44□□□□□ -0.9
CCDC88C-208ENST00000554165 FAM96BQ9Y3D0 163 aa9.44□□□□□ -0.9
CCDC88C-208ENST00000554165 NBEAL1Q6ZS30 2694 aa9.43□□□□□ -0.9
CCDC88C-208ENST00000554165 A0A1W2PP11 408 aa9.43□□□□□ -0.9
CCDC88C-208ENST00000554165 C17orf98A8MV24 154 aa9.43□□□□□ -0.9
CCDC88C-208ENST00000554165 SLC33A1O00400 549 aaPredicted RBP9.43□□□□□ -0.9
CCDC88C-208ENST00000554165 HSPB6O14558 160 aa9.43□□□□□ -0.9
CCDC88C-208ENST00000554165 MAGEB3O15480 346 aa9.43□□□□□ -0.9
CCDC88C-208ENST00000554165 ZNF728P0DKX0 622 aa9.43□□□□□ -0.9
CCDC88C-208ENST00000554165 ZNF44P15621 663 aa9.43□□□□□ -0.9
CCDC88C-208ENST00000554165 EEF1B2P24534 225 aaKnown RBP9.43□□□□□ -0.9
CCDC88C-208ENST00000554165 CFPP27918 469 aa9.43□□□□□ -0.9
CCDC88C-208ENST00000554165 BDKRB2P30411 391 aa9.43□□□□□ -0.9
CCDC88C-208ENST00000554165 PTGFRP43088 359 aa9.43□□□□□ -0.9
CCDC88C-208ENST00000554165 MAP2K4P45985 399 aa9.43□□□□□ -0.9
CCDC88C-208ENST00000554165 GLIPR1P48060 266 aa9.43□□□□□ -0.9
CCDC88C-208ENST00000554165 GP2P55259 537 aaKnown RBP9.43□□□□□ -0.9
CCDC88C-208ENST00000554165 SLC35A2P78381 396 aa9.43□□□□□ -0.9
CCDC88C-208ENST00000554165 RELBQ01201 579 aa9.43□□□□□ -0.9
CCDC88C-208ENST00000554165 IRF3Q14653 427 aa9.43□□□□□ -0.9
CCDC88C-208ENST00000554165 TAF9Q16594 264 aa9.43□□□□□ -0.9
CCDC88C-208ENST00000554165 Q499Y3 187 aa9.43□□□□□ -0.9
CCDC88C-208ENST00000554165 YIF1BQ5BJH7 314 aa9.43□□□□□ -0.9
CCDC88C-208ENST00000554165 SPIN3Q5JUX0 258 aa9.43□□□□□ -0.9
CCDC88C-208ENST00000554165 LDLRAD2Q5SZI1 272 aa9.43□□□□□ -0.9
CCDC88C-208ENST00000554165 UTF1Q5T230 341 aa9.43□□□□□ -0.9
CCDC88C-208ENST00000554165 FAM27D1Q5T7N8 215 aa9.43□□□□□ -0.9
CCDC88C-208ENST00000554165 NCR3LG1Q68D85 454 aa9.43□□□□□ -0.9
CCDC88C-208ENST00000554165 ASCL4Q6XD76 172 aa9.43□□□□□ -0.9
CCDC88C-208ENST00000554165 LHFPL4Q7Z7J7 247 aa9.43□□□□□ -0.9
CCDC88C-208ENST00000554165 OR5D13Q8NGL4 314 aa9.43□□□□□ -0.9
CCDC88C-208ENST00000554165 SSMEM1Q8WWF3 244 aa9.43□□□□□ -0.9
CCDC88C-208ENST00000554165 MYDGFQ969H8 173 aa9.43□□□□□ -0.9
CCDC88C-208ENST00000554165 COQ2Q96H96 371 aa9.43□□□□□ -0.9
CCDC88C-208ENST00000554165 DERL3Q96Q80 235 aa9.43□□□□□ -0.9
CCDC88C-208ENST00000554165 ZNF184Q99676 751 aaPredicted RBP9.43□□□□□ -0.9
CCDC88C-208ENST00000554165 ING4Q9UNL4 249 aa9.43□□□□□ -0.9
CCDC88C-208ENST00000554165 TRAV24A0A0B4J272 114 aa9.42□□□□□ -0.9
CCDC88C-208ENST00000554165 MGST3O14880 152 aa9.42□□□□□ -0.9
CCDC88C-208ENST00000554165 DEGS1O15121 323 aa9.42□□□□□ -0.9
CCDC88C-208ENST00000554165 HTR3BO95264 441 aa9.42□□□□□ -0.9
CCDC88C-208ENST00000554165 ALDOBP05062 364 aa9.42□□□□□ -0.9
CCDC88C-208ENST00000554165 MDKP21741 143 aaPredicted RBP9.42□□□□□ -0.9
CCDC88C-208ENST00000554165 LMO1P25800 156 aa9.42□□□□□ -0.9
CCDC88C-208ENST00000554165 ZNF93P35789 620 aaPredicted RBP9.42□□□□□ -0.9
CCDC88C-208ENST00000554165 TGFBR2P37173 567 aa9.42□□□□□ -0.9
CCDC88C-208ENST00000554165 GDNFP39905 211 aa9.42□□□□□ -0.9
CCDC88C-208ENST00000554165 COMPP49747 757 aaPredicted RBP9.42□□□□□ -0.9
CCDC88C-208ENST00000554165 P2RX3P56373 397 aa9.42□□□□□ -0.9
CCDC88C-208ENST00000554165 TAS2R43P59537 309 aa9.42□□□□□ -0.9
CCDC88C-208ENST00000554165 PPP3R1P63098 170 aa9.42□□□□□ -0.9
CCDC88C-208ENST00000554165 GUCA2AQ02747 115 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms