RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 LINC00527Q9UJ94 153 aa5.07□□□□□ -1.6
LIMA1-204ENST00000549064 IGLV1-36A0A0B4J1U3 117 aa5.06□□□□□ -1.6
LIMA1-204ENST00000549064 TRIM64CA6NLI5 447 aa5.06□□□□□ -1.6
LIMA1-204ENST00000549064 TRPC5OSA6NMA1 111 aa5.06□□□□□ -1.6
LIMA1-204ENST00000549064 EVPLLA8MZ36 301 aa5.06□□□□□ -1.6
LIMA1-204ENST00000549064 CDC42EP2O14613 210 aa5.06□□□□□ -1.6
LIMA1-204ENST00000549064 UBDO15205 165 aa5.06□□□□□ -1.6
LIMA1-204ENST00000549064 LY6G6CO95867 125 aa5.06□□□□□ -1.6
LIMA1-204ENST00000549064 VIMP08670 466 aaKnown RBP5.06□□□□□ -1.6
LIMA1-204ENST00000549064 PGA5P0DJD9 388 aa5.06□□□□□ -1.6
LIMA1-204ENST00000549064 PSG2P11465 335 aa5.06□□□□□ -1.6
LIMA1-204ENST00000549064 PSKH1P11801 424 aa5.06□□□□□ -1.6
LIMA1-204ENST00000549064 GLRA1P23415 457 aa5.06□□□□□ -1.6
LIMA1-204ENST00000549064 BDKRB2P30411 391 aa5.06□□□□□ -1.6
LIMA1-204ENST00000549064 CDKN2AP42771 156 aaKnown RBP5.06□□□□□ -1.6
LIMA1-204ENST00000549064 PRKXP51817 358 aa5.06□□□□□ -1.6
LIMA1-204ENST00000549064 DLX6P56179 175 aa5.06□□□□□ -1.6
LIMA1-204ENST00000549064 MTPNP58546 118 aa5.06□□□□□ -1.6
LIMA1-204ENST00000549064 SPIBQ01892 262 aa5.06□□□□□ -1.6
LIMA1-204ENST00000549064 ZNF770Q6IQ21 691 aaPredicted RBP5.06□□□□□ -1.6
LIMA1-204ENST00000549064 OR2AK2Q8NG84 335 aa5.06□□□□□ -1.6
LIMA1-204ENST00000549064 OR10Z1Q8NGY1 313 aa5.06□□□□□ -1.6
LIMA1-204ENST00000549064 OR2AJ1Q8NGZ0 328 aa5.06□□□□□ -1.6
LIMA1-204ENST00000549064 OR2T27Q8NH04 317 aa5.06□□□□□ -1.6
LIMA1-204ENST00000549064 OR4Q3Q8NH05 313 aa5.06□□□□□ -1.6
LIMA1-204ENST00000549064 NDNFQ8TB73 568 aa5.06□□□□□ -1.6
LIMA1-204ENST00000549064 TMEM163Q8TC26 289 aa5.06□□□□□ -1.6
LIMA1-204ENST00000549064 CAPSLQ8WWF8 208 aa5.06□□□□□ -1.6
LIMA1-204ENST00000549064 QTRT1Q9BXR0 403 aaKnown RBP5.06□□□□□ -1.6
LIMA1-204ENST00000549064 SP140LQ9H930 580 aa5.06□□□□□ -1.6
LIMA1-204ENST00000549064 NMNAT1Q9HAN9 279 aaPredicted RBP5.06□□□□□ -1.6
LIMA1-204ENST00000549064 RHCGQ9UBD6 479 aa5.06□□□□□ -1.6
LIMA1-204ENST00000549064 LGALS13Q9UHV8 139 aa5.06□□□□□ -1.6
LIMA1-204ENST00000549064 RNF150Q9ULK6 438 aa5.06□□□□□ -1.6
LIMA1-204ENST00000549064 GMEB1Q9Y692 573 aa5.06□□□□□ -1.6
LIMA1-204ENST00000549064 A0A1W2PRV1 198 aa5.05□□□□□ -1.6
LIMA1-204ENST00000549064 C17orf98A8MV24 154 aa5.05□□□□□ -1.6
LIMA1-204ENST00000549064 BIRC5O15392 142 aa5.05□□□□□ -1.6
LIMA1-204ENST00000549064 SPINT2O43291 252 aa5.05□□□□□ -1.6
LIMA1-204ENST00000549064 XRCC3O43542 346 aa5.05□□□□□ -1.6
LIMA1-204ENST00000549064 IGHV1-8P0DP01 117 aa5.05□□□□□ -1.6
LIMA1-204ENST00000549064 SLC6A1P30531 599 aa5.05□□□□□ -1.6
LIMA1-204ENST00000549064 YAP1P46937 504 aaKnown RBP5.05□□□□□ -1.6
LIMA1-204ENST00000549064 FAM3AP98173 230 aa5.05□□□□□ -1.6
LIMA1-204ENST00000549064 PRKCDQ05655 676 aa5.05□□□□□ -1.6
LIMA1-204ENST00000549064 SRSF7Q16629 238 aaKnown RBP eCLIP5.05□□□□□ -1.6
LIMA1-204ENST00000549064 KLHL12Q53G59 568 aa5.05□□□□□ -1.6
LIMA1-204ENST00000549064 AGBL2Q5U5Z8 902 aa5.05□□□□□ -1.6
LIMA1-204ENST00000549064 TBPL2Q6SJ96 375 aa5.05□□□□□ -1.6
LIMA1-204ENST00000549064 DLEU7Q6UYE1 221 aa5.05□□□□□ -1.6
LIMA1-204ENST00000549064 CCDC80Q76M96 950 aa5.05□□□□□ -1.6
LIMA1-204ENST00000549064 SLC16A9Q7RTY1 509 aa5.05□□□□□ -1.6
LIMA1-204ENST00000549064 C16orf82Q7Z2V1 217 aa5.05□□□□□ -1.6
LIMA1-204ENST00000549064 DHDDSQ86SQ9 333 aa5.05□□□□□ -1.6
LIMA1-204ENST00000549064 ANKRD13BQ86YJ7 626 aa5.05□□□□□ -1.6
LIMA1-204ENST00000549064 KIRREL3Q8IZU9 778 aa5.05□□□□□ -1.6
LIMA1-204ENST00000549064 CD177Q8N6Q3 437 aa5.05□□□□□ -1.6
LIMA1-204ENST00000549064 OR11H6Q8NGC7 330 aa5.05□□□□□ -1.6
LIMA1-204ENST00000549064 OR13D1Q8NGV5 346 aa5.05□□□□□ -1.6
LIMA1-204ENST00000549064 SPTSSAQ969W0 71 aa5.05□□□□□ -1.6
LIMA1-204ENST00000549064 SDSLQ96GA7 329 aa5.05□□□□□ -1.6
LIMA1-204ENST00000549064 AKR1E2Q96JD6 320 aa5.05□□□□□ -1.6
LIMA1-204ENST00000549064 RBM14Q96PK6 669 aaKnown RBP5.05□□□□□ -1.6
LIMA1-204ENST00000549064 PAPOLGQ9BWT3 736 aaKnown RBP5.05□□□□□ -1.6
LIMA1-204ENST00000549064 FN3KQ9H479 309 aa5.05□□□□□ -1.6
LIMA1-204ENST00000549064 DCLRE1BQ9H816 532 aa5.05□□□□□ -1.6
LIMA1-204ENST00000549064 ZFP57Q9NU63 452 aa5.05□□□□□ -1.6
LIMA1-204ENST00000549064 CCDC167Q9P0B6 97 aa5.05□□□□□ -1.6
LIMA1-204ENST00000549064 CYB5R1Q9UHQ9 305 aa5.05□□□□□ -1.6
LIMA1-204ENST00000549064 B9D1Q9UPM9 204 aa5.05□□□□□ -1.6
LIMA1-204ENST00000549064 RHBDD3Q9Y3P4 386 aa5.05□□□□□ -1.6
LIMA1-204ENST00000549064 LRP12Q9Y561 859 aa5.05□□□□□ -1.6
LIMA1-204ENST00000549064 IER3IP1Q9Y5U9 82 aa5.05□□□□□ -1.6
LIMA1-204ENST00000549064 PKHD1P08F94 4074 aa5.05□□□□□ -1.6
LIMA1-204ENST00000549064 MUC4Q99102 2169 aa5.05□□□□□ -1.6
LIMA1-204ENST00000549064 RFPL4AA6NLU0 287 aa5.04□□□□□ -1.6
LIMA1-204ENST00000549064 RFPL4AL1F8VTS6 287 aa5.04□□□□□ -1.6
LIMA1-204ENST00000549064 SLC22A2O15244 555 aa5.04□□□□□ -1.6
LIMA1-204ENST00000549064 OR2F2O95006 317 aa5.04□□□□□ -1.6
LIMA1-204ENST00000549064 TROVE2P10155 538 aaKnown RBP eCLIP5.04□□□□□ -1.6
LIMA1-204ENST00000549064 SPNP16150 400 aa5.04□□□□□ -1.6
LIMA1-204ENST00000549064 ZNF823P16415 610 aa5.04□□□□□ -1.6
LIMA1-204ENST00000549064 OTX1P32242 354 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-204ENST00000549064 SLC18A1P54219 525 aa5.04□□□□□ -1.6
LIMA1-204ENST00000549064 CD81P60033 236 aa5.04□□□□□ -1.6
LIMA1-204ENST00000549064 ST3GAL3Q11203 375 aa5.04□□□□□ -1.6
LIMA1-204ENST00000549064 C2orf76Q3KRA6 126 aa5.04□□□□□ -1.6
LIMA1-204ENST00000549064 ANKDD1AQ495B1 522 aa5.04□□□□□ -1.6
LIMA1-204ENST00000549064 ZBED5Q49AG3 693 aa5.04□□□□□ -1.6
LIMA1-204ENST00000549064 PAPPA-AS1Q5QFB9 102 aa5.04□□□□□ -1.6
LIMA1-204ENST00000549064 RAB12Q6IQ22 244 aa5.04□□□□□ -1.6
LIMA1-204ENST00000549064 DRAM2Q6UX65 266 aa5.04□□□□□ -1.6
LIMA1-204ENST00000549064 KCTD8Q6ZWB6 473 aa5.04□□□□□ -1.6
LIMA1-204ENST00000549064 ZNF367Q7RTV3 350 aa5.04□□□□□ -1.6
LIMA1-204ENST00000549064 RPP25LQ8N5L8 163 aaKnown RBP5.04□□□□□ -1.6
LIMA1-204ENST00000549064 CYB561A3Q8NBI2 242 aa5.04□□□□□ -1.6
LIMA1-204ENST00000549064 MNS1Q8NEH6 495 aa5.04□□□□□ -1.6
LIMA1-204ENST00000549064 OR8U1Q8NH10 309 aa5.04□□□□□ -1.6
LIMA1-204ENST00000549064 OCC1Q8TAD7 63 aa5.04□□□□□ -1.6
LIMA1-204ENST00000549064 STMN2Q93045 179 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms