RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 OR51I2Q9H344 312 aa12.38□□□□□ -0.43
CLIP1-216ENST00000541410 C12orf4Q9NQ89 552 aa12.38□□□□□ -0.43
CLIP1-216ENST00000541410 CACNA1DQ01668 2161 aa12.38□□□□□ -0.43
CLIP1-216ENST00000541410 M0R233 179 aa12.38□□□□□ -0.43
CLIP1-216ENST00000541410 FCGR2CP31995 323 aa12.38□□□□□ -0.43
CLIP1-216ENST00000541410 SERPINF1P36955 418 aa12.38□□□□□ -0.43
CLIP1-216ENST00000541410 MPPED2Q15777 294 aa12.38□□□□□ -0.43
CLIP1-216ENST00000541410 BEX5Q5H9J7 111 aa12.38□□□□□ -0.43
CLIP1-216ENST00000541410 ZNF660Q6AZW8 331 aaPredicted RBP12.38□□□□□ -0.43
CLIP1-216ENST00000541410 FAM180AQ6UWF9 173 aa12.38□□□□□ -0.43
CLIP1-216ENST00000541410 ZNF573Q86YE8 665 aa12.38□□□□□ -0.43
CLIP1-216ENST00000541410 OR8H3Q8N146 312 aa12.38□□□□□ -0.43
CLIP1-216ENST00000541410 PPP1R1CQ8WVI7 109 aa12.38□□□□□ -0.43
CLIP1-216ENST00000541410 NECAP2Q9NVZ3 263 aa12.38□□□□□ -0.43
CLIP1-216ENST00000541410 ERVH48-1M5A8F1 160 aa12.37□□□□□ -0.43
CLIP1-216ENST00000541410 CNOT4O95628 575 aaKnown RBP12.37□□□□□ -0.43
CLIP1-216ENST00000541410 DTYMKP23919 212 aa12.37□□□□□ -0.43
CLIP1-216ENST00000541410 TAS2R31P59538 309 aa12.37□□□□□ -0.43
CLIP1-216ENST00000541410 NDUFA5Q16718 116 aa12.37□□□□□ -0.43
CLIP1-216ENST00000541410 ELP2Q6IA86 826 aa12.37□□□□□ -0.43
CLIP1-216ENST00000541410 FAHD2BQ6P2I3 314 aaPredicted RBP12.37□□□□□ -0.43
CLIP1-216ENST00000541410 CCDC36Q8IYA8 594 aa12.37□□□□□ -0.43
CLIP1-216ENST00000541410 SCCPDHQ8NBX0 429 aa12.37□□□□□ -0.43
CLIP1-216ENST00000541410 TMEM185AQ8NFB2 350 aa12.37□□□□□ -0.43
CLIP1-216ENST00000541410 FAHD2AQ96GK7 314 aa12.37□□□□□ -0.43
CLIP1-216ENST00000541410 ARL6Q9H0F7 186 aa12.37□□□□□ -0.43
CLIP1-216ENST00000541410 MSL2Q9HCI7 577 aa12.37□□□□□ -0.43
CLIP1-216ENST00000541410 OBP2BQ9NPH6 170 aa12.37□□□□□ -0.43
CLIP1-216ENST00000541410 RELNP78509 3460 aa12.37□□□□□ -0.43
CLIP1-216ENST00000541410 ZZEF1O43149 2961 aa12.37□□□□□ -0.43
CLIP1-216ENST00000541410 TLN1Q9Y490 2541 aaKnown RBP12.37□□□□□ -0.43
CLIP1-216ENST00000541410 TRAV39A0A0B4J263 110 aa12.37□□□□□ -0.43
CLIP1-216ENST00000541410 IGHV1-18A0A0C4DH31 117 aa12.37□□□□□ -0.43
CLIP1-216ENST00000541410 OR5B21A6NL26 309 aa12.37□□□□□ -0.43
CLIP1-216ENST00000541410 CEACAM18A8MTB9 384 aa12.37□□□□□ -0.43
CLIP1-216ENST00000541410 SFT2D2O95562 160 aa12.37□□□□□ -0.43
CLIP1-216ENST00000541410 CRYABP02511 175 aaKnown RBP12.37□□□□□ -0.43
CLIP1-216ENST00000541410 ZNF83P51522 516 aa12.37□□□□□ -0.43
CLIP1-216ENST00000541410 ZNF154Q13106 437 aa12.37□□□□□ -0.43
CLIP1-216ENST00000541410 EXOSC2Q13868 293 aaKnown RBP12.37□□□□□ -0.43
CLIP1-216ENST00000541410 PRR30Q53SZ7 412 aaPredicted RBP12.37□□□□□ -0.43
CLIP1-216ENST00000541410 C1orf185Q5T7R7 199 aa12.37□□□□□ -0.43
CLIP1-216ENST00000541410 ZNF826PQ6ZT77 177 aa12.37□□□□□ -0.43
CLIP1-216ENST00000541410 TMEM200AQ86VY9 491 aa12.37□□□□□ -0.43
CLIP1-216ENST00000541410 FAM58AQ8N1B3 248 aa12.37□□□□□ -0.43
CLIP1-216ENST00000541410 Q8NFD4 153 aa12.37□□□□□ -0.43
CLIP1-216ENST00000541410 OR5T2Q8NGG2 359 aa12.37□□□□□ -0.43
CLIP1-216ENST00000541410 CLEC4MQ9H2X3 399 aaPredicted RBP12.37□□□□□ -0.43
CLIP1-216ENST00000541410 ZNF286AQ9HBT8 521 aa12.37□□□□□ -0.43
CLIP1-216ENST00000541410 EDARQ9UNE0 448 aa12.37□□□□□ -0.43
CLIP1-216ENST00000541410 C14orf166Q9Y224 244 aaKnown RBP12.37□□□□□ -0.43
CLIP1-216ENST00000541410 ROS1P08922 2347 aa12.37□□□□□ -0.43
CLIP1-216ENST00000541410 SCTP09683 121 aa12.36□□□□□ -0.43
CLIP1-216ENST00000541410 BMP5P22003 454 aa12.36□□□□□ -0.43
CLIP1-216ENST00000541410 DHODHQ02127 395 aa12.36□□□□□ -0.43
CLIP1-216ENST00000541410 SP6Q3SY56 376 aa12.36□□□□□ -0.43
CLIP1-216ENST00000541410 PHLDA2Q53GA4 152 aa12.36□□□□□ -0.43
CLIP1-216ENST00000541410 C20orf204Q6ZNR8 217 aa12.36□□□□□ -0.43
CLIP1-216ENST00000541410 SAXO1Q8IYX7 474 aa12.36□□□□□ -0.43
CLIP1-216ENST00000541410 SUMF2Q8NBJ7 301 aa12.36□□□□□ -0.43
CLIP1-216ENST00000541410 S100PBPQ96BU1 408 aa12.36□□□□□ -0.43
CLIP1-216ENST00000541410 RTL8AQ9BWD3 113 aa12.36□□□□□ -0.43
CLIP1-216ENST00000541410 PLCE1Q9P212 2302 aa12.36□□□□□ -0.43
CLIP1-216ENST00000541410 BET1O15155 118 aa12.36□□□□□ -0.43
CLIP1-216ENST00000541410 HOXB5P09067 269 aa12.36□□□□□ -0.43
CLIP1-216ENST00000541410 RAC2P15153 192 aa12.36□□□□□ -0.43
CLIP1-216ENST00000541410 ZNF44P15621 663 aa12.36□□□□□ -0.43
CLIP1-216ENST00000541410 RPS2P15880 293 aaKnown RBP12.36□□□□□ -0.43
CLIP1-216ENST00000541410 TMUB2Q71RG4 321 aa12.36□□□□□ -0.43
CLIP1-216ENST00000541410 ZNF546Q86UE3 836 aa12.36□□□□□ -0.43
CLIP1-216ENST00000541410 MFFQ9GZY8 342 aa12.36□□□□□ -0.43
CLIP1-216ENST00000541410 OR5H1A6NKK0 313 aa12.35□□□□□ -0.43
CLIP1-216ENST00000541410 RFPL4AA6NLU0 287 aa12.35□□□□□ -0.43
CLIP1-216ENST00000541410 DBX1A6NMT0 343 aa12.35□□□□□ -0.43
CLIP1-216ENST00000541410 RFPL4AL1F8VTS6 287 aa12.35□□□□□ -0.43
CLIP1-216ENST00000541410 RRP8O43159 456 aaKnown RBP12.35□□□□□ -0.43
CLIP1-216ENST00000541410 MLNRO43193 412 aa12.35□□□□□ -0.43
CLIP1-216ENST00000541410 TFF1P04155 84 aa12.35□□□□□ -0.43
CLIP1-216ENST00000541410 FAM87AP0C7U9 286 aa12.35□□□□□ -0.43
CLIP1-216ENST00000541410 CEBPDP49716 269 aaPredicted RBP12.35□□□□□ -0.43
CLIP1-216ENST00000541410 IL24Q13007 206 aa12.35□□□□□ -0.43
CLIP1-216ENST00000541410 OR8G1Q15617 311 aa12.35□□□□□ -0.43
CLIP1-216ENST00000541410 BEND4Q6ZU67 534 aa12.35□□□□□ -0.43
CLIP1-216ENST00000541410 C22orf34Q6ZV56 151 aa12.35□□□□□ -0.43
CLIP1-216ENST00000541410 ZNF767PQ75MW2 155 aa12.35□□□□□ -0.43
CLIP1-216ENST00000541410 Q8NA96 180 aa12.35□□□□□ -0.43
CLIP1-216ENST00000541410 C1orf162Q8NEQ5 155 aaPredicted RBP12.35□□□□□ -0.43
CLIP1-216ENST00000541410 OR11L1Q8NGX0 322 aa12.35□□□□□ -0.43
CLIP1-216ENST00000541410 SCGB3A2Q96PL1 93 aa12.35□□□□□ -0.43
CLIP1-216ENST00000541410 CITED4Q96RK1 184 aa12.35□□□□□ -0.43
CLIP1-216ENST00000541410 GPHA2Q96T91 129 aa12.35□□□□□ -0.43
CLIP1-216ENST00000541410 UFSP2Q9NUQ7 469 aa12.35□□□□□ -0.43
CLIP1-216ENST00000541410 COMMD9Q9P000 198 aa12.35□□□□□ -0.43
CLIP1-216ENST00000541410 TRAV24A0A0B4J272 114 aa12.35□□□□□ -0.43
CLIP1-216ENST00000541410 IGHV2OR16-5A0A0B4J2B6 119 aa12.35□□□□□ -0.43
CLIP1-216ENST00000541410 TEX13DA0A0J9YY54 714 aaPredicted RBP12.35□□□□□ -0.43
CLIP1-216ENST00000541410 SIRPB1O00241 398 aa12.35□□□□□ -0.43
CLIP1-216ENST00000541410 PIGPP57054 158 aa12.35□□□□□ -0.43
CLIP1-216ENST00000541410 TBR1Q16650 682 aa12.35□□□□□ -0.43
CLIP1-216ENST00000541410 TMEM211Q6ICI0 200 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms