RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 CD200P41217 278 aa11.33□□□□□ -0.6
MSH6-210ENST00000540021 CCR5P51681 352 aa11.33□□□□□ -0.6
MSH6-210ENST00000540021 LRP11Q86VZ4 500 aa11.33□□□□□ -0.6
MSH6-210ENST00000540021 TMEM37Q8WXS4 190 aa11.33□□□□□ -0.6
MSH6-210ENST00000540021 PPP1R3CQ9UQK1 317 aa11.33□□□□□ -0.6
MSH6-210ENST00000540021 DOCK7Q96N67 2140 aa11.33□□□□□ -0.6
MSH6-210ENST00000540021 LMO7DNF2Z398 122 aa11.33□□□□□ -0.6
MSH6-210ENST00000540021 WDR1O75083 606 aa11.33□□□□□ -0.6
MSH6-210ENST00000540021 DANCRP0C864 163 aa11.33□□□□□ -0.6
MSH6-210ENST00000540021 HAAOP46952 286 aa11.33□□□□□ -0.6
MSH6-210ENST00000540021 CXorf66Q5JRM2 361 aaPredicted RBP11.33□□□□□ -0.6
MSH6-210ENST00000540021 SMIM7Q9BQ49 75 aa11.33□□□□□ -0.6
MSH6-210ENST00000540021 OR14J1Q9UGF5 321 aa11.33□□□□□ -0.6
MSH6-210ENST00000540021 WASF3Q9UPY6 502 aa11.33□□□□□ -0.6
MSH6-210ENST00000540021 IGKV1-9A0A0C4DH69 117 aa11.32□□□□□ -0.6
MSH6-210ENST00000540021 CHST1O43916 411 aa11.32□□□□□ -0.6
MSH6-210ENST00000540021 TUSC2O75896 110 aa11.32□□□□□ -0.6
MSH6-210ENST00000540021 CCL2P13500 99 aa11.32□□□□□ -0.6
MSH6-210ENST00000540021 SRPXP78539 464 aa11.32□□□□□ -0.6
MSH6-210ENST00000540021 IL13RA2Q14627 380 aa11.32□□□□□ -0.6
MSH6-210ENST00000540021 EXTL1Q92935 676 aa11.32□□□□□ -0.6
MSH6-210ENST00000540021 TMED3Q9Y3Q3 217 aa11.32□□□□□ -0.6
MSH6-210ENST00000540021 BTBD17A6NE02 478 aa11.32□□□□□ -0.6
MSH6-210ENST00000540021 P04436 131 aa11.32□□□□□ -0.6
MSH6-210ENST00000540021 METTL15P1P0C7V9 234 aa11.32□□□□□ -0.6
MSH6-210ENST00000540021 CSRP1P21291 193 aaKnown RBP11.32□□□□□ -0.6
MSH6-210ENST00000540021 LHX4Q969G2 390 aa11.32□□□□□ -0.6
MSH6-210ENST00000540021 MYOTQ9UBF9 498 aa11.32□□□□□ -0.6
MSH6-210ENST00000540021 A0A1B0GV90 55 aa11.32□□□□□ -0.6
MSH6-210ENST00000540021 LOC390937A0A1W2PQ73 354 aa11.32□□□□□ -0.6
MSH6-210ENST00000540021 CRYM-AS1A6NIL9 109 aa11.32□□□□□ -0.6
MSH6-210ENST00000540021 PPP5D1E7EU14 171 aa11.32□□□□□ -0.6
MSH6-210ENST00000540021 TERTO14746 1132 aaKnown RBP11.32□□□□□ -0.6
MSH6-210ENST00000540021 RND3P61587 244 aa11.32□□□□□ -0.6
MSH6-210ENST00000540021 PMP22Q01453 160 aa11.32□□□□□ -0.6
MSH6-210ENST00000540021 CST9LP1Q5W188 147 aa11.32□□□□□ -0.6
MSH6-210ENST00000540021 ANKRD37Q7Z713 158 aa11.32□□□□□ -0.6
MSH6-210ENST00000540021 TBC1D26Q86UD7 250 aa11.32□□□□□ -0.6
MSH6-210ENST00000540021 OR6X1Q8NH79 312 aa11.32□□□□□ -0.6
MSH6-210ENST00000540021 ZNF816-ZNF321PA0A0X1KG74 233 aa11.31□□□□□ -0.6
MSH6-210ENST00000540021 C5orf67F2Z3F1 127 aa11.31□□□□□ -0.6
MSH6-210ENST00000540021 H7BYZ3 331 aa11.31□□□□□ -0.6
MSH6-210ENST00000540021 CD5P06127 495 aa11.31□□□□□ -0.6
MSH6-210ENST00000540021 IFI6P09912 130 aa11.31□□□□□ -0.6
MSH6-210ENST00000540021 RNF224P0DH78 156 aa11.31□□□□□ -0.6
MSH6-210ENST00000540021 IZUMO4Q1ZYL8 232 aa11.31□□□□□ -0.6
MSH6-210ENST00000540021 ZNF600Q6ZNG1 722 aa11.31□□□□□ -0.6
MSH6-210ENST00000540021 CLDN16Q9Y5I7 305 aa11.31□□□□□ -0.6
MSH6-210ENST00000540021 CHD7Q9P2D1 2997 aa11.31□□□□□ -0.6
MSH6-210ENST00000540021 TRAV39A0A0B4J263 110 aa11.31□□□□□ -0.6
MSH6-210ENST00000540021 FTCDNL1E5RQL4 147 aa11.31□□□□□ -0.6
MSH6-210ENST00000540021 PGA4P0DJD7 388 aa11.31□□□□□ -0.6
MSH6-210ENST00000540021 PGA3P0DJD8 388 aa11.31□□□□□ -0.6
MSH6-210ENST00000540021 ZNF32P17041 273 aa11.31□□□□□ -0.6
MSH6-210ENST00000540021 CARD18P57730 90 aa11.31□□□□□ -0.6
MSH6-210ENST00000540021 HLA-DRB3P79483 266 aa11.31□□□□□ -0.6
MSH6-210ENST00000540021 MRPL38Q96DV4 380 aaKnown RBP11.31□□□□□ -0.6
MSH6-210ENST00000540021 SPACA9Q96E40 222 aaPredicted RBP11.31□□□□□ -0.6
MSH6-210ENST00000540021 CEP250Q9BV73 2442 aa11.31□□□□□ -0.6
MSH6-210ENST00000540021 SEC14L6B5MCN3 397 aa11.31□□□□□ -0.6
MSH6-210ENST00000540021 CXCL13O43927 109 aa11.31□□□□□ -0.6
MSH6-210ENST00000540021 NPIPB7O75200 414 aa11.31□□□□□ -0.6
MSH6-210ENST00000540021 PPYP01298 95 aa11.31□□□□□ -0.6
MSH6-210ENST00000540021 POU2F2P09086 479 aa11.31□□□□□ -0.6
MSH6-210ENST00000540021 GALNSP34059 522 aa11.31□□□□□ -0.6
MSH6-210ENST00000540021 ERVS71-1P61550 626 aa11.31□□□□□ -0.6
MSH6-210ENST00000540021 RPS23P62266 143 aaKnown RBP11.31□□□□□ -0.6
MSH6-210ENST00000540021 CCL20P78556 96 aa11.31□□□□□ -0.6
MSH6-210ENST00000540021 SNAI3Q3KNW1 292 aa11.31□□□□□ -0.6
MSH6-210ENST00000540021 PACRGQ96M98 296 aaPredicted RBP11.31□□□□□ -0.6
MSH6-210ENST00000540021 CHST5Q9GZS9 411 aa11.31□□□□□ -0.6
MSH6-210ENST00000540021 DBX1A6NMT0 343 aa11.3□□□□□ -0.6
MSH6-210ENST00000540021 HEXAP06865 529 aa11.3□□□□□ -0.6
MSH6-210ENST00000540021 OR8U8P0C7N1 319 aa11.3□□□□□ -0.6
MSH6-210ENST00000540021 FUT3P21217 361 aa11.3□□□□□ -0.6
MSH6-210ENST00000540021 PLP2Q04941 152 aa11.3□□□□□ -0.6
MSH6-210ENST00000540021 ZNF66Q6ZN08 573 aa11.3□□□□□ -0.6
MSH6-210ENST00000540021 VASH2Q86V25 355 aa11.3□□□□□ -0.6
MSH6-210ENST00000540021 GAPTQ8N292 157 aa11.3□□□□□ -0.6
MSH6-210ENST00000540021 SHDQ96IW2 340 aa11.3□□□□□ -0.6
MSH6-210ENST00000540021 SLC7A10Q9NS82 523 aa11.3□□□□□ -0.6
MSH6-210ENST00000540021 TIMM10BQ9Y5J6 103 aa11.3□□□□□ -0.6
MSH6-210ENST00000540021 CDH23Q9H251 3354 aa11.3□□□□□ -0.6
MSH6-210ENST00000540021 DOCK8Q8NF50 2099 aa11.3□□□□□ -0.6
MSH6-210ENST00000540021 TRBV6-7A0A0A0MS04 114 aa11.3□□□□□ -0.6
MSH6-210ENST00000540021 LOC102725191A0A1B0GVB3 256 aa11.3□□□□□ -0.6
MSH6-210ENST00000540021 UBE2CO00762 179 aa11.3□□□□□ -0.6
MSH6-210ENST00000540021 MPPED1O15442 326 aa11.3□□□□□ -0.6
MSH6-210ENST00000540021 SOX15O60248 233 aa11.3□□□□□ -0.6
MSH6-210ENST00000540021 CLPSP04118 112 aa11.3□□□□□ -0.6
MSH6-210ENST00000540021 MMP7P09237 267 aaPredicted RBP11.3□□□□□ -0.6
MSH6-210ENST00000540021 CEACAM16Q2WEN9 425 aa11.3□□□□□ -0.6
MSH6-210ENST00000540021 ZNF611Q8N823 705 aa11.3□□□□□ -0.6
MSH6-210ENST00000540021 MALSU1Q96EH3 234 aa11.3□□□□□ -0.6
MSH6-210ENST00000540021 R4GN57 208 aa11.3□□□□□ -0.6
MSH6-210ENST00000540021 TICRRQ7Z2Z1 1910 aa11.3□□□□□ -0.6
MSH6-210ENST00000540021 CLDN34H7C241 214 aa11.3□□□□□ -0.6
MSH6-210ENST00000540021 DFFBO76075 338 aa11.3□□□□□ -0.6
MSH6-210ENST00000540021 HNF1AP20823 631 aa11.3□□□□□ -0.6
MSH6-210ENST00000540021 GPM6AP51674 278 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms