RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 FAM90A20PA6NIJ5 464 aa9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 FAM90A9PA6NNJ1 464 aa9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 FAM90A12PA8MX19 464 aa9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 FAM90A5PA8MXJ8 464 aa9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 SEC14L6B5MCN3 397 aa9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 H3BN98 237 aa9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 TOR1AO14656 332 aa9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 MGST3O14880 152 aa9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 CASQ2O14958 399 aaPredicted RBP9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 PSPNO60542 156 aa9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 E2F6O75461 281 aa9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 HAND1O96004 215 aa9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 IGHA1P01876 353 aa9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 TTRP02766 147 aa9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 FAM90A15PP0C7V4 464 aa9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 FAM90A13PP0C7W8 464 aa9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 FAM90A14PP0C7W9 464 aa9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 FAM90A24PP0C7X0 464 aa9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 GABRR1P24046 479 aa9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 CDK2P24941 298 aa9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 CD34P28906 385 aa9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 MAGEA2P43356 314 aa9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 PRRX1P54821 245 aa9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 ROM1Q03395 351 aa9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 KIR2DS1Q14954 304 aa9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 HLA-DRB5Q30154 266 aa9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 ZNF829Q3KNS6 432 aaPredicted RBP9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 SLC35D3Q5M8T2 416 aa9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 PRAMEF5Q5TYX0 476 aa9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 TEX38Q6PEX7 206 aa9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 AMIGO2Q86SJ2 522 aa9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 ENTHD1Q8IYW4 607 aa9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 ZNF679Q8IYX0 411 aa9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 OR14K1Q8NGZ2 314 aa9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 OR8U1Q8NH10 309 aa9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 NRG4Q8WWG1 115 aa9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 CENPNQ96H22 339 aaPredicted RBP9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 LYSTQ99698 3801 aa9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 NIPSNAP1Q9BPW8 284 aa9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 VCX3BQ9H321 246 aa9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 GAL3ST2Q9H3Q3 398 aa9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 LINC00527Q9UJ94 153 aa9.15□□□□□ -0.94
CLSTN3-209ENST00000539982 A6NIN4 97 aa9.14□□□□□ -0.95
CLSTN3-209ENST00000539982 FGF16O43320 207 aa9.14□□□□□ -0.95
CLSTN3-209ENST00000539982 INMTO95050 263 aa9.14□□□□□ -0.95
CLSTN3-209ENST00000539982 CST1P01037 141 aa9.14□□□□□ -0.95
CLSTN3-209ENST00000539982 VHLP40337 213 aa9.14□□□□□ -0.95
CLSTN3-209ENST00000539982 P2RX3P56373 397 aa9.14□□□□□ -0.95
CLSTN3-209ENST00000539982 LPCAT4Q643R3 524 aa9.14□□□□□ -0.95
CLSTN3-209ENST00000539982 MEPCEQ7L2J0 689 aaKnown RBP9.14□□□□□ -0.95
CLSTN3-209ENST00000539982 CPOQ8IVL8 374 aa9.14□□□□□ -0.95
CLSTN3-209ENST00000539982 STPG2Q8N412 459 aa9.14□□□□□ -0.95
CLSTN3-209ENST00000539982 C5orf56Q8N8D9 126 aa9.14□□□□□ -0.95
CLSTN3-209ENST00000539982 TRMT10AQ8TBZ6 339 aaKnown RBP9.14□□□□□ -0.95
CLSTN3-209ENST00000539982 CORO2AQ92828 525 aa9.14□□□□□ -0.95
CLSTN3-209ENST00000539982 SLAMF9Q96A28 289 aa9.14□□□□□ -0.95
CLSTN3-209ENST00000539982 KRTAP17-1Q9BYP8 105 aa9.14□□□□□ -0.95
CLSTN3-209ENST00000539982 ZNF286AQ9HBT8 521 aa9.14□□□□□ -0.95
CLSTN3-209ENST00000539982 TAS2R3Q9NYW6 316 aa9.14□□□□□ -0.95
CLSTN3-209ENST00000539982 GLS2Q9UI32 602 aa9.14□□□□□ -0.95
CLSTN3-209ENST00000539982 SLC7A11Q9UPY5 501 aa9.14□□□□□ -0.95
CLSTN3-209ENST00000539982 U3KQV3 271 aa9.14□□□□□ -0.95
CLSTN3-209ENST00000539982 HUWE1Q7Z6Z7 4374 aaKnown RBP9.14□□□□□ -0.95
CLSTN3-209ENST00000539982 A0A087X0M5 115 aa9.13□□□□□ -0.95
CLSTN3-209ENST00000539982 TRGV10A0A0A0MS01 117 aa9.13□□□□□ -0.95
CLSTN3-209ENST00000539982 A0A1B0GTI1 187 aa9.13□□□□□ -0.95
CLSTN3-209ENST00000539982 A0A1B0GX30 115 aa9.13□□□□□ -0.95
CLSTN3-209ENST00000539982 FAM172BPA6NC97 362 aa9.13□□□□□ -0.95
CLSTN3-209ENST00000539982 DHRS7CA6NNS2 312 aa9.13□□□□□ -0.95
CLSTN3-209ENST00000539982 PRR32B1ATL7 298 aa9.13□□□□□ -0.95
CLSTN3-209ENST00000539982 GNGT2O14610 69 aa9.13□□□□□ -0.95
CLSTN3-209ENST00000539982 IGHG2P01859 326 aa9.13□□□□□ -0.95
CLSTN3-209ENST00000539982 HMGN1P05114 100 aa9.13□□□□□ -0.95
CLSTN3-209ENST00000539982 SLC2A5P22732 501 aa9.13□□□□□ -0.95
CLSTN3-209ENST00000539982 GDNFP39905 211 aa9.13□□□□□ -0.95
CLSTN3-209ENST00000539982 CDX1P47902 265 aaPredicted RBP9.13□□□□□ -0.95
CLSTN3-209ENST00000539982 RIDAP52758 137 aaKnown RBP9.13□□□□□ -0.95
CLSTN3-209ENST00000539982 RPS7P62081 194 aaKnown RBP9.13□□□□□ -0.95
CLSTN3-209ENST00000539982 ZNF91Q05481 1191 aa9.13□□□□□ -0.95
CLSTN3-209ENST00000539982 MFGE8Q08431 387 aaPredicted RBP9.13□□□□□ -0.95
CLSTN3-209ENST00000539982 GINS1Q14691 196 aa9.13□□□□□ -0.95
CLSTN3-209ENST00000539982 PNLIPRP3Q17RR3 467 aa9.13□□□□□ -0.95
CLSTN3-209ENST00000539982 DEFB136Q30KP8 78 aa9.13□□□□□ -0.95
CLSTN3-209ENST00000539982 ZNF260Q3ZCT1 412 aa9.13□□□□□ -0.95
CLSTN3-209ENST00000539982 OGFRL1Q5TC84 451 aaPredicted RBP9.13□□□□□ -0.95
CLSTN3-209ENST00000539982 Q6ZSR3 168 aa9.13□□□□□ -0.95
CLSTN3-209ENST00000539982 LCNL1Q6ZST4 164 aa9.13□□□□□ -0.95
CLSTN3-209ENST00000539982 SLC25A26Q70HW3 274 aa9.13□□□□□ -0.95
CLSTN3-209ENST00000539982 SLC35E3Q7Z769 313 aa9.13□□□□□ -0.95
CLSTN3-209ENST00000539982 FOXRED2Q8IWF2 684 aa9.13□□□□□ -0.95
CLSTN3-209ENST00000539982 ELMOD2Q8IZ81 293 aa9.13□□□□□ -0.95
CLSTN3-209ENST00000539982 ASB17Q8WXJ9 295 aa9.13□□□□□ -0.95
CLSTN3-209ENST00000539982 EMG1Q92979 244 aaKnown RBP9.13□□□□□ -0.95
CLSTN3-209ENST00000539982 CITED4Q96RK1 184 aa9.13□□□□□ -0.95
CLSTN3-209ENST00000539982 REEP1Q9H902 201 aa9.13□□□□□ -0.95
CLSTN3-209ENST00000539982 PCDHB16Q9NRJ7 776 aa9.13□□□□□ -0.95
CLSTN3-209ENST00000539982 SAMHD1Q9Y3Z3 626 aaKnown RBP9.13□□□□□ -0.95
CLSTN3-209ENST00000539982 SIRT4Q9Y6E7 314 aaPredicted RBP9.13□□□□□ -0.95
CLSTN3-209ENST00000539982 IGKV1-27A0A075B6S5 117 aa9.12□□□□□ -0.95
CLSTN3-209ENST00000539982 FUOMA2VDF0 154 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms