RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 ALOX5APP20292 161 aa12.21□□□□□ -0.45
LIG1-203ENST00000536218 HNF1AP20823 631 aa12.21□□□□□ -0.45
LIG1-203ENST00000536218 APOBEC1P41238 236 aaKnown RBP12.21□□□□□ -0.45
LIG1-203ENST00000536218 VAMP2P63027 116 aa12.21□□□□□ -0.45
LIG1-203ENST00000536218 ZXDAP98168 799 aa12.21□□□□□ -0.45
LIG1-203ENST00000536218 COL10A1Q03692 680 aa12.21□□□□□ -0.45
LIG1-203ENST00000536218 CLN3Q13286 438 aa12.21□□□□□ -0.45
LIG1-203ENST00000536218 OR5L2Q8NGL0 311 aa12.21□□□□□ -0.45
LIG1-203ENST00000536218 RNASEH2CQ8TDP1 164 aaKnown RBP12.21□□□□□ -0.45
LIG1-203ENST00000536218 HAS2Q92819 552 aa12.21□□□□□ -0.45
LIG1-203ENST00000536218 CYYR1Q96J86 154 aa12.21□□□□□ -0.45
LIG1-203ENST00000536218 COA3Q9Y2R0 106 aaPredicted RBP12.21□□□□□ -0.45
LIG1-203ENST00000536218 PTRH2Q9Y3E5 179 aaKnown RBP12.21□□□□□ -0.45
LIG1-203ENST00000536218 WSB1Q9Y6I7 421 aa12.21□□□□□ -0.45
LIG1-203ENST00000536218 TK1P04183 234 aa12.21□□□□□ -0.46
LIG1-203ENST00000536218 RBMXP38159 391 aaKnown RBP12.21□□□□□ -0.46
LIG1-203ENST00000536218 POU3F1Q03052 451 aaPredicted RBP12.21□□□□□ -0.46
LIG1-203ENST00000536218 LFNGQ8NES3 379 aa12.21□□□□□ -0.46
LIG1-203ENST00000536218 FNDC9Q8TBE3 224 aa12.21□□□□□ -0.46
LIG1-203ENST00000536218 HIST1H2AAQ96QV6 131 aa12.21□□□□□ -0.46
LIG1-203ENST00000536218 TXNIPQ9H3M7 391 aa12.21□□□□□ -0.46
LIG1-203ENST00000536218 PLEKHA2Q9HB19 425 aa12.21□□□□□ -0.46
LIG1-203ENST00000536218 OR52A1Q9UKL2 312 aa12.21□□□□□ -0.46
LIG1-203ENST00000536218 RTTNQ86VV8 2226 aa12.21□□□□□ -0.46
LIG1-203ENST00000536218 G3V3Y1 287 aa12.2□□□□□ -0.46
LIG1-203ENST00000536218 DIRAS3O95661 229 aa12.2□□□□□ -0.46
LIG1-203ENST00000536218 FGF5P12034 268 aa12.2□□□□□ -0.46
LIG1-203ENST00000536218 MMP9P14780 707 aa12.2□□□□□ -0.46
LIG1-203ENST00000536218 EPHA1P21709 976 aa12.2□□□□□ -0.46
LIG1-203ENST00000536218 CD82P27701 267 aa12.2□□□□□ -0.46
LIG1-203ENST00000536218 P2RY6Q15077 328 aa12.2□□□□□ -0.46
LIG1-203ENST00000536218 STRAPQ9Y3F4 350 aaKnown RBP12.2□□□□□ -0.46
LIG1-203ENST00000536218 VSTM2BA6NLU5 285 aa12.2□□□□□ -0.46
LIG1-203ENST00000536218 DXOO77932 396 aaKnown RBP12.2□□□□□ -0.46
LIG1-203ENST00000536218 SRP19P09132 144 aaKnown RBP12.2□□□□□ -0.46
LIG1-203ENST00000536218 TMEM11P17152 192 aa12.2□□□□□ -0.46
LIG1-203ENST00000536218 TLE3Q04726 772 aa12.2□□□□□ -0.46
LIG1-203ENST00000536218 ZNF573Q86YE8 665 aa12.2□□□□□ -0.46
LIG1-203ENST00000536218 WDFY1Q8IWB7 410 aa12.2□□□□□ -0.46
LIG1-203ENST00000536218 SGPP2Q8IWX5 399 aa12.2□□□□□ -0.46
LIG1-203ENST00000536218 OR13C3Q8NGS6 347 aa12.2□□□□□ -0.46
LIG1-203ENST00000536218 DKKL1Q9UK85 242 aa12.2□□□□□ -0.46
LIG1-203ENST00000536218 A0A1W2PNR3 127 aa12.2□□□□□ -0.46
LIG1-203ENST00000536218 ANKUB1A6NFN9 424 aa12.2□□□□□ -0.46
LIG1-203ENST00000536218 M0QZK8 103 aa12.2□□□□□ -0.46
LIG1-203ENST00000536218 GGCTO75223 188 aaKnown RBP12.2□□□□□ -0.46
LIG1-203ENST00000536218 DEDDO75618 318 aa12.2□□□□□ -0.46
LIG1-203ENST00000536218 S100A7P31151 101 aa12.2□□□□□ -0.46
LIG1-203ENST00000536218 SFTPDP35247 375 aa12.2□□□□□ -0.46
LIG1-203ENST00000536218 OR3A2P47893 321 aa12.2□□□□□ -0.46
LIG1-203ENST00000536218 ZNF41P51814 821 aaPredicted RBP12.2□□□□□ -0.46
LIG1-203ENST00000536218 TLE4Q04727 773 aa12.2□□□□□ -0.46
LIG1-203ENST00000536218 WDR25Q64LD2 544 aaPredicted RBP12.2□□□□□ -0.46
LIG1-203ENST00000536218 C11orf42Q8N5U0 333 aa12.2□□□□□ -0.46
LIG1-203ENST00000536218 NECAP1Q8NC96 275 aa12.2□□□□□ -0.46
LIG1-203ENST00000536218 ASB5Q8WWX0 329 aa12.2□□□□□ -0.46
LIG1-203ENST00000536218 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.2□□□□□ -0.46
LIG1-203ENST00000536218 NPIPA5E9PKD4 350 aa12.19□□□□□ -0.46
LIG1-203ENST00000536218 MS4A18H0YCH9 400 aa12.19□□□□□ -0.46
LIG1-203ENST00000536218 EFNA2O43921 213 aa12.19□□□□□ -0.46
LIG1-203ENST00000536218 LMX1BO60663 402 aa12.19□□□□□ -0.46
LIG1-203ENST00000536218 TDGF1P13385 188 aa12.19□□□□□ -0.46
LIG1-203ENST00000536218 GABRR1P24046 479 aa12.19□□□□□ -0.46
LIG1-203ENST00000536218 MMP16P51512 607 aa12.19□□□□□ -0.46
LIG1-203ENST00000536218 ELLP55199 621 aaPredicted RBP12.19□□□□□ -0.46
LIG1-203ENST00000536218 RAB35Q15286 201 aa12.19□□□□□ -0.46
LIG1-203ENST00000536218 MS4A18Q3C1V0 323 aa12.19□□□□□ -0.46
LIG1-203ENST00000536218 NUP54Q7Z3B4 507 aa12.19□□□□□ -0.46
LIG1-203ENST00000536218 LINC00346Q8IVM7 164 aa12.19□□□□□ -0.46
LIG1-203ENST00000536218 AGBL5Q8NDL9 886 aa12.19□□□□□ -0.46
LIG1-203ENST00000536218 EXTL1Q92935 676 aa12.19□□□□□ -0.46
LIG1-203ENST00000536218 MRGPRX4Q96LA9 322 aa12.19□□□□□ -0.46
LIG1-203ENST00000536218 ST6GALNAC5Q9BVH7 336 aa12.19□□□□□ -0.46
LIG1-203ENST00000536218 C19orf25Q9UFG5 118 aaPredicted RBP12.19□□□□□ -0.46
LIG1-203ENST00000536218 NPIPA1Q9UND3 350 aa12.19□□□□□ -0.46
LIG1-203ENST00000536218 RBX1P62877 108 aa12.19□□□□□ -0.46
LIG1-203ENST00000536218 HLA-DRB3P79483 266 aa12.19□□□□□ -0.46
LIG1-203ENST00000536218 MFGE8Q08431 387 aaPredicted RBP12.19□□□□□ -0.46
LIG1-203ENST00000536218 ZNF66Q6ZN08 573 aa12.19□□□□□ -0.46
LIG1-203ENST00000536218 SSX7Q7RTT5 188 aa12.19□□□□□ -0.46
LIG1-203ENST00000536218 OTOSQ8NHW6 89 aa12.19□□□□□ -0.46
LIG1-203ENST00000536218 ZNF519Q8TB69 540 aa12.19□□□□□ -0.46
LIG1-203ENST00000536218 TMEM37Q8WXS4 190 aa12.19□□□□□ -0.46
LIG1-203ENST00000536218 RASL10BQ96S79 203 aa12.19□□□□□ -0.46
LIG1-203ENST00000536218 RTBDNQ9BSG5 229 aaPredicted RBP12.19□□□□□ -0.46
LIG1-203ENST00000536218 PARD6AQ9NPB6 346 aa12.19□□□□□ -0.46
LIG1-203ENST00000536218 NUP210LQ5VU65 1888 aa12.19□□□□□ -0.46
LIG1-203ENST00000536218 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.18□□□□□ -0.46
LIG1-203ENST00000536218 CLDN34H7C241 214 aa12.18□□□□□ -0.46
LIG1-203ENST00000536218 EGR3Q06889 387 aa12.18□□□□□ -0.46
LIG1-203ENST00000536218 IL15RAQ13261 267 aa12.18□□□□□ -0.46
LIG1-203ENST00000536218 RTL6Q6ICC9 239 aa12.18□□□□□ -0.46
LIG1-203ENST00000536218 OR5H2Q8NGV7 314 aa12.18□□□□□ -0.46
LIG1-203ENST00000536218 TMEM14AQ9Y6G1 99 aa12.18□□□□□ -0.46
LIG1-203ENST00000536218 FAM221AA4D161 298 aa12.18□□□□□ -0.46
LIG1-203ENST00000536218 IFNA21P01568 189 aa12.18□□□□□ -0.46
LIG1-203ENST00000536218 OR5AC1P0C628 307 aa12.18□□□□□ -0.46
LIG1-203ENST00000536218 IDH3GP51553 393 aaPredicted RBP12.18□□□□□ -0.46
LIG1-203ENST00000536218 RAB11AP62491 216 aa12.18□□□□□ -0.46
LIG1-203ENST00000536218 DEGS2Q6QHC5 323 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 91.4 ms